BLASTX nr result

ID: Ephedra28_contig00019835 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00019835
         (557 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002296706.1| predicted protein [Thalassiosira pseudonana ...    64   3e-08

>ref|XP_002296706.1| predicted protein [Thalassiosira pseudonana CCMP1335]
           gi|220968561|gb|EED86907.1| predicted protein
           [Thalassiosira pseudonana CCMP1335]
          Length = 599

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 30/189 (15%)
 Frame = +1

Query: 22  IVFYGIKQNAECSGFAYAATFNRITVMSARYD---PMQRSLGENECKEITKSEDIFVAED 192
           I FYGI+ NA+ + +A+     RI +M+A YD   P  +  G +  K  T++  +  A  
Sbjct: 410 ITFYGIRTNAQLAAYAFKIASERIALMAASYDAAHPQIKRTGVSNGKSGTRTVRLSYAMG 469

Query: 193 NSQENKETTKSGAVTLVAR-----NNYRLGIVHGLS------------IAVKEEKKNHQS 321
                    K G     AR     N  R     G S            + V E  +N Q+
Sbjct: 470 IVIGLDRDVKEGLRKEEARRKSKLNKARKAAARGESYHEDDGDSVVDVVDVDEGDENEQA 529

Query: 322 DSM----------LALVLHSKEVGKQVLKTHGIKVRHLSSSESERKINKEAYDQGVADSK 471
            S+          +ALV H K++ + VLK+  IKV+     ++   +N  AY++G+ DSK
Sbjct: 530 VSLGVLERENSAQVALVDHQKKIAEDVLKSKNIKVQKARKPKTVT-LNVAAYEKGIVDSK 588

Query: 472 EIDINQRGL 498
           +ID+NQ+ +
Sbjct: 589 DIDLNQQAI 597


Top