BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00019787
         (1275 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q41046.1|PHY_PINSY RecName: Full=Phytochrome gi|1237084|emb|C...   305   3e-80
gb|ACN40636.1| unknown [Picea sitchensis]                             303   1e-79
ref|XP_001773550.1| phytochrome 4 [Physcomitrella patens] gi|139...   280   9e-73
gb|AAM94952.1| phytochrome [Physcomitrella patens]                    278   3e-72
gb|ABW91071.1| phytochrome-4 [Ceratodon purpureus]                    277   6e-72
dbj|BAB39687.1| phytochrome [Marchantia paleacea subsp. diptera]      274   6e-71
ref|XP_002991119.1| hypothetical protein SELMODRAFT_161430 [Sela...   271   5e-70
ref|XP_002991641.1| hypothetical protein SELMODRAFT_161807 [Sela...   271   5e-70
ref|XP_001754366.1| phytochrome 5c [Physcomitrella patens] gi|16...   270   7e-70
ref|XP_001761145.1| phytochrome 5a [Physcomitrella patens] gi|16...   270   7e-70
ref|XP_001767224.1| phytochrome 5b3 [Physcomitrella patens] gi|1...   268   5e-69
gb|AAM94954.1| phytochrome [Physcomitrella patens]                    267   6e-69
ref|XP_001782339.1| phytochrome 2 [Physcomitrella patens] gi|139...   267   8e-69
sp|Q01549.1|PHY1_SELMA RecName: Full=Phytochrome 1 gi|22603|emb|...   266   1e-68
prf||1709211A phytochrome                                             266   1e-68
sp|Q39557.1|PHY2_CERPU RecName: Full=Phytochrome 2 gi|1314837|gb...   261   4e-67
gb|AAB19058.1| phytochrome photoreceptor [Ceratodon purpureus]        260   7e-67
gb|AAM94956.1| phytochrome [Ceratodon purpureus]                      258   3e-66
ref|XP_001778155.1| phytochrome 1 [Physcomitrella patens] gi|139...   258   4e-66
gb|AAM94953.1| phytochrome [Physcomitrella patens]                    258   4e-66

>sp|Q41046.1|PHY_PINSY RecName: Full=Phytochrome gi|1237084|emb|CAA65510.1| phytochrome
            [Pinus sylvestris]
          Length = 1131

 Score =  305 bits (780), Expect = 3e-80
 Identities = 147/217 (67%), Positives = 178/217 (82%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            +MFTR+L+EE+DL++DQKQ +ETS  CERQMQKVMDDMDLES+EDGYMELDT +F LG +
Sbjct: 915  MMFTRKLLEETDLSDDQKQFVETSAVCERQMQKVMDDMDLESLEDGYMELDTAEFILGTV 974

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            IDAVVSQGMI LREK +QLIR+IP +VKT+ ++GD+ ++QQILADFLLN +RFTP P+GW
Sbjct: 975  IDAVVSQGMIVLREKGLQLIREIPGEVKTMRLYGDEVKIQQILADFLLNVLRFTPSPEGW 1034

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            VAIKV P +KQLGGGLH VHLE RITHPG GLPAEL+QDLFD ++ A QEGVG       
Sbjct: 1035 VAIKVFPTLKQLGGGLHVVHLEFRITHPGLGLPAELVQDLFDRSQWATQEGVGLSMCRKL 1094

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNG+V+YI+E   CYFLVN+  P+AQRED  S +
Sbjct: 1095 LKLMNGDVRYIRESGICYFLVNVEFPMAQREDAASIK 1131


>gb|ACN40636.1| unknown [Picea sitchensis]
          Length = 1132

 Score =  303 bits (776), Expect = 1e-79
 Identities = 148/217 (68%), Positives = 178/217 (82%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            +MFTR+L+EE+DL++DQKQ +ETS  CERQMQKV+DDMDL+S+EDGYMELDT +F LG +
Sbjct: 916  MMFTRKLLEETDLSDDQKQFVETSAVCERQMQKVIDDMDLDSLEDGYMELDTAEFILGTV 975

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            IDAVVSQGMI LREK +QLIR+IP +VKT+ ++GDQ RLQQILADFLLNA+RFTP P+GW
Sbjct: 976  IDAVVSQGMIILREKGLQLIREIPGEVKTMHLYGDQVRLQQILADFLLNALRFTPSPEGW 1035

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            VAIKVLP +KQL G LH V LE RITHPG GLPAEL+QDLFD ++   QEGVG       
Sbjct: 1036 VAIKVLPTLKQLSGALHVVLLEFRITHPGPGLPAELVQDLFDRSRWTTQEGVGLSMCRKL 1095

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNG+VQY++E  +CYFLVN+ LPLAQRED  S +
Sbjct: 1096 LKLMNGDVQYVRESGKCYFLVNVELPLAQREDASSMK 1132


>ref|XP_001773550.1| phytochrome 4 [Physcomitrella patens] gi|139001628|dbj|BAF51710.1|
            phytochrome4 [Physcomitrella patens]
            gi|162675089|gb|EDQ61588.1| phytochrome 4 [Physcomitrella
            patens]
          Length = 1126

 Score =  280 bits (716), Expect = 9e-73
 Identities = 133/217 (61%), Positives = 169/217 (77%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME++DL+EDQ+Q +ETS  CERQ++KV+DDMDLESIEDGY+ELDT +F +G +
Sbjct: 910  IMFTRNLMEDTDLSEDQRQFVETSAVCERQLRKVLDDMDLESIEDGYLELDTNEFVMGTV 969

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAVVSQGMI  REK +QLIR+ P ++K +C+FGDQ RLQQ+LADFLLNA+RFTP  +GW
Sbjct: 970  MDAVVSQGMITSREKGLQLIRETPREIKNMCLFGDQVRLQQVLADFLLNAVRFTPSSEGW 1029

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGGG+H +HLE R+TH G GLP EL+ ++FD  +   QEG+G       
Sbjct: 1030 VGIKVVPTKKRLGGGIHVMHLEFRVTHSGMGLPEELVHEMFDRGRGMTQEGLGLSMCRKL 1089

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNG VQYI+E  + YFLV + LPLAQR+D GS R
Sbjct: 1090 VKLMNGNVQYIRETGKSYFLVEVELPLAQRDDAGSVR 1126


>gb|AAM94952.1| phytochrome [Physcomitrella patens]
          Length = 1126

 Score =  278 bits (711), Expect = 3e-72
 Identities = 132/217 (60%), Positives = 168/217 (77%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME++DL+EDQ+Q +ETS  CERQ++KV+DDMDLESIEDGY+ELDT +F +G +
Sbjct: 910  IMFTRNLMEDTDLSEDQRQFVETSAVCERQLRKVLDDMDLESIEDGYLELDTNEFVMGTV 969

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTPPQ-GW 359
            +DAVVSQGMI  REK +QLIR+ P ++K +C+FGDQ RLQQ+LADFLLNA++FTP   GW
Sbjct: 970  MDAVVSQGMITSREKGLQLIRETPREIKNMCLFGDQVRLQQVLADFLLNAVKFTPSSGGW 1029

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGGG+H +HLE R+TH G GLP EL+ ++FD  +   QEG+G       
Sbjct: 1030 VGIKVVPTKKRLGGGIHVMHLEFRVTHSGMGLPEELVHEMFDRGRGMTQEGLGLSMCRKL 1089

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNG VQYI+E  + YFLV + LPLAQR+D GS R
Sbjct: 1090 VKLMNGNVQYIRETGKSYFLVEVELPLAQRDDAGSVR 1126


>gb|ABW91071.1| phytochrome-4 [Ceratodon purpureus]
          Length = 1125

 Score =  277 bits (709), Expect = 6e-72
 Identities = 130/217 (59%), Positives = 170/217 (78%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME++DL+++QKQ ++TS  CERQ++K++DDMDLESIEDGY+EL+T +F +G +
Sbjct: 909  IMFTRNLMEDTDLSDEQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETAEFEMGSM 968

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAVVSQGM+  REK +QLIR+ P ++K +C+FGDQ RLQQ+LADFLLNA+RFTP  +GW
Sbjct: 969  MDAVVSQGMVTSREKGLQLIRETPREIKNMCLFGDQVRLQQVLADFLLNAVRFTPSSEGW 1028

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGGG H VHLE R+THPGSGLP EL+ ++FD  +   QEG+G       
Sbjct: 1029 VGIKVVPTKKRLGGGFHVVHLEFRVTHPGSGLPEELVHEMFDRGRGMTQEGLGLSMCRKL 1088

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNGEV+YI++  + YFLVNL LPL  R+D GS R
Sbjct: 1089 VKLMNGEVKYIRDTGKSYFLVNLELPLTVRDDAGSVR 1125


>dbj|BAB39687.1| phytochrome [Marchantia paleacea subsp. diptera]
          Length = 1126

 Score =  274 bits (700), Expect = 6e-71
 Identities = 129/217 (59%), Positives = 168/217 (77%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR L+E+++LTE+QKQ IETS  CERQ+++++DDMDLESIEDGY+ELDT +F +G +
Sbjct: 910  IMFTRNLVEDTNLTEEQKQFIETSALCERQLRRILDDMDLESIEDGYLELDTAEFIMGTV 969

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAV+SQGMI  REK +QLI D P D K +C+FGDQ RLQQ+LADFLLNAIRFTP  +GW
Sbjct: 970  MDAVISQGMITSREKGLQLIWDTPRDTKNLCLFGDQVRLQQVLADFLLNAIRFTPSSEGW 1029

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IK +    + GGG+H VH E R+THPG+GLP EL+Q++FD  +   QEG+G       
Sbjct: 1030 VGIKGVSSRHRQGGGVHVVHFEFRVTHPGAGLPEELVQEMFDRGRGMTQEGLGLNMCRKL 1089

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               M+G+VQYI+E  +CYFLVN+ LP+AQR+D GS +
Sbjct: 1090 LKLMSGDVQYIREAGKCYFLVNVELPIAQRDDAGSVK 1126


>ref|XP_002991119.1| hypothetical protein SELMODRAFT_161430 [Selaginella moellendorffii]
            gi|300141213|gb|EFJ07927.1| hypothetical protein
            SELMODRAFT_161430 [Selaginella moellendorffii]
          Length = 1143

 Score =  271 bits (692), Expect = 5e-70
 Identities = 128/217 (58%), Positives = 169/217 (77%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME +DL+EDQKQ +ET   CE+Q++K++DDMDLESIEDGY+ELDT +F +G +
Sbjct: 922  IMFTRTLMETTDLSEDQKQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFMMGTV 981

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAV+SQGMI  +EK++QLIR+ P ++K + ++GDQ RLQQ+LADFLLNAIRFTP  + W
Sbjct: 982  MDAVISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENW 1041

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV    K+LGGG+H +HLE RITHPG GLP EL+Q++FD  +   QEG+G       
Sbjct: 1042 VGIKVATSRKRLGGGVHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKL 1101

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNGEV+Y++EP + +FLV+L LPLAQR+D GS +
Sbjct: 1102 VKLMNGEVEYLREPGKNFFLVSLELPLAQRDDAGSVK 1138


>ref|XP_002991641.1| hypothetical protein SELMODRAFT_161807 [Selaginella moellendorffii]
            gi|300140490|gb|EFJ07212.1| hypothetical protein
            SELMODRAFT_161807 [Selaginella moellendorffii]
          Length = 1142

 Score =  271 bits (692), Expect = 5e-70
 Identities = 128/217 (58%), Positives = 169/217 (77%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME +DL+EDQKQ +ET   CE+Q++K++DDMDLESIEDGY+ELDT +F +G +
Sbjct: 921  IMFTRTLMETTDLSEDQKQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFMMGTV 980

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAV+SQGMI  +EK++QLIR+ P ++K + ++GDQ RLQQ+LADFLLNAIRFTP  + W
Sbjct: 981  MDAVISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENW 1040

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV    K+LGGG+H +HLE RITHPG GLP EL+Q++FD  +   QEG+G       
Sbjct: 1041 VGIKVATSRKRLGGGVHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKL 1100

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNGEV+Y++EP + +FLV+L LPLAQR+D GS +
Sbjct: 1101 VKLMNGEVEYLREPGKNFFLVSLELPLAQRDDAGSVK 1137


>ref|XP_001754366.1| phytochrome 5c [Physcomitrella patens] gi|162694468|gb|EDQ80816.1|
            phytochrome 5c [Physcomitrella patens]
          Length = 1124

 Score =  270 bits (691), Expect = 7e-70
 Identities = 130/217 (59%), Positives = 170/217 (78%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME++DL+E+QKQ ++TS  CERQ++K++DDMDLESIEDGY+EL+T +F +G +
Sbjct: 908  IMFTRNLMEDTDLSEEQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETAEFDMGSM 967

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAVVSQGMI  REK +QLIR+ P ++K +C+FGDQ RLQQ+LAD+LLNA+RFTP  +GW
Sbjct: 968  MDAVVSQGMITSREKGLQLIRETPREIKGMCLFGDQVRLQQVLADYLLNAVRFTPSSEGW 1027

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+   K+L GG H VHLE R+THPGSGLP EL+ ++FD  +   QEG+G       
Sbjct: 1028 VGIKVVSTKKRLVGGFHVVHLEFRVTHPGSGLPEELVCEMFDRGRGMTQEGLGLSMCRKL 1087

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNGEV+YI++  + YFLVNL LPLA R+D G+AR
Sbjct: 1088 VKLMNGEVKYIRDAGKSYFLVNLELPLAGRDDSGNAR 1124


>ref|XP_001761145.1| phytochrome 5a [Physcomitrella patens] gi|162687485|gb|EDQ73867.1|
            phytochrome 5a [Physcomitrella patens]
          Length = 1123

 Score =  270 bits (691), Expect = 7e-70
 Identities = 129/217 (59%), Positives = 167/217 (76%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME++DL++DQKQ ++TS  CERQ++K++DDMDLESIEDGY+EL+T +F +G +
Sbjct: 907  IMFTRNLMEDTDLSDDQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETAEFEMGSM 966

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAVVSQGM+  REK +QLIR+ P ++K +C+FGDQ RLQQ+LADFLLNA+RFTP  +GW
Sbjct: 967  MDAVVSQGMVTSREKGLQLIRETPREIKDMCLFGDQVRLQQVLADFLLNAVRFTPSSEGW 1026

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+   ++LGGG H VHLE R+THPGSGLP ELI ++FD  +   QEG+G       
Sbjct: 1027 VGIKVVATKRRLGGGFHVVHLEFRVTHPGSGLPEELIHEMFDRGRGMTQEGLGLNMCRKL 1086

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNG VQY +E  + YFLV L LPLA R+D G+ R
Sbjct: 1087 VKLMNGNVQYKRETGKSYFLVTLELPLAVRDDTGTMR 1123


>ref|XP_001767224.1| phytochrome 5b3 [Physcomitrella patens] gi|162681479|gb|EDQ67905.1|
            phytochrome 5b3 [Physcomitrella patens]
          Length = 1131

 Score =  268 bits (684), Expect = 5e-69
 Identities = 126/217 (58%), Positives = 169/217 (77%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME++DL+++QKQ ++TS  CERQ++K++DDMDLESIEDGY+EL+T++F +G +
Sbjct: 908  IMFTRNLMEDTDLSDEQKQYMDTSAVCERQLRKILDDMDLESIEDGYLELETMEFEMGSM 967

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAVVSQGM+  REK +QLIR+ P +++ +C+FGDQ RLQQ+LADFLLNA+RFTP  +GW
Sbjct: 968  MDAVVSQGMVTSREKGLQLIRETPREIQGMCLFGDQVRLQQVLADFLLNAVRFTPSSEGW 1027

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGGG H VHLE R+THPGSGLP EL+ ++FD  +   QEG+G       
Sbjct: 1028 VGIKVVPTRKRLGGGFHVVHLEFRVTHPGSGLPEELVHEMFDRGRGMTQEGLGLSMCRKL 1087

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNGEV+YI++  +  FLV+L LPL   +D GS R
Sbjct: 1088 VKLMNGEVKYIRDTGKSCFLVSLELPLTVSDDAGSVR 1124


>gb|AAM94954.1| phytochrome [Physcomitrella patens]
          Length = 1130

 Score =  267 bits (683), Expect = 6e-69
 Identities = 126/218 (57%), Positives = 168/218 (77%), Gaps = 1/218 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            I+FTR LME++DL+ DQ+QL+ETS  CERQ++K++DD+DLESIEDGY+ELDT +F +G +
Sbjct: 910  IVFTRNLMEDTDLSVDQRQLVETSAVCERQLRKILDDLDLESIEDGYLELDTTEFEMGTV 969

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAVVSQGMI  REK +QLIR+ P ++K +C++GDQ RLQQ+LADFLLNA+RFTP  +GW
Sbjct: 970  MDAVVSQGMITSREKGLQLIRETPSEIKNMCLYGDQVRLQQVLADFLLNAVRFTPSSEGW 1029

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LG G+H +H+E R+THPG GLP EL+ ++F   +   QEG+G       
Sbjct: 1030 VGIKVVPTKKRLGRGVHVMHVEFRVTHPGLGLPEELVHEMFGRGRGMTQEGLGLSMCRKL 1089

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSARA 653
               MNG VQYI+E  +  FLV + LPLAQR+D GS R+
Sbjct: 1090 VKLMNGTVQYIRETGKSCFLVEVELPLAQRDDAGSVRS 1127


>ref|XP_001782339.1| phytochrome 2 [Physcomitrella patens] gi|139001623|dbj|BAF51708.1|
            phytochrome2 [Physcomitrella patens]
            gi|162666198|gb|EDQ52859.1| phytochrome 2 [Physcomitrella
            patens]
          Length = 1130

 Score =  267 bits (682), Expect = 8e-69
 Identities = 126/218 (57%), Positives = 167/218 (76%), Gaps = 1/218 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            I+FTR LME++DL+ DQ+Q +ETS  CERQ++K++DD+DLESIEDGY+ELDT +F +G +
Sbjct: 910  IVFTRNLMEDTDLSVDQRQFVETSAVCERQLRKILDDLDLESIEDGYLELDTTEFEMGTV 969

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAVVSQGMI  REK +QLIR+ P ++K +C++GDQ RLQQ+LADFLLNA+RFTP  +GW
Sbjct: 970  MDAVVSQGMITSREKGLQLIRETPSEIKNMCLYGDQVRLQQVLADFLLNAVRFTPSSEGW 1029

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LG G+H +HLE R+THPG GLP EL+ ++F   +   QEG+G       
Sbjct: 1030 VGIKVVPTKKRLGRGVHVMHLEFRVTHPGLGLPEELVHEMFGRGRGMTQEGLGLSMCRKL 1089

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSARA 653
               MNG VQYI+E  +  FLV + LPLAQR+D GS R+
Sbjct: 1090 VKLMNGTVQYIRETGKSCFLVEVELPLAQRDDAGSVRS 1127


>sp|Q01549.1|PHY1_SELMA RecName: Full=Phytochrome 1 gi|22603|emb|CAA43698.1| phytochrome
            [Selaginella martensii]
          Length = 1134

 Score =  266 bits (681), Expect = 1e-68
 Identities = 128/217 (58%), Positives = 167/217 (76%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME +DL+EDQKQ +ET   CE+Q++K++DDMDLESIEDGY+ELDT +F +G +
Sbjct: 913  IMFTRTLMETTDLSEDQKQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFMMGTV 972

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAV+SQGMI  +EK++QLIR+ P ++K + ++GDQ RLQQ+LADFLLNAIRFTP  + W
Sbjct: 973  MDAVISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENW 1032

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV    K+LGG +H +HLE RITHPG GLP EL+Q++FD  +   QEG+G       
Sbjct: 1033 VGIKVATSRKRLGGVVHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKL 1092

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNGEV+YI+E  + YFLV+L LPLAQR+D GS +
Sbjct: 1093 VKLMNGEVEYIREAGKNYFLVSLELPLAQRDDAGSVK 1129


>prf||1709211A phytochrome
          Length = 267

 Score =  266 bits (681), Expect = 1e-68
 Identities = 128/217 (58%), Positives = 167/217 (76%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3   IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
           IMFTR LME +DL+EDQKQ +ET   CE+Q++K++DDMDLESIEDGY+ELDT +F +G +
Sbjct: 46  IMFTRTLMETTDLSEDQKQYVETGTVCEKQIRKILDDMDLESIEDGYLELDTTEFMMGTV 105

Query: 183 IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
           +DAV+SQGMI  +EK++QLIR+ P ++K + ++GDQ RLQQ+LADFLLNAIRFTP  + W
Sbjct: 106 MDAVISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENW 165

Query: 360 VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
           V IKV    K+LGG +H +HLE RITHPG GLP EL+Q++FD  +   QEG+G       
Sbjct: 166 VGIKVATSRKRLGGVVHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKL 225

Query: 540 XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
              MNGEV+YI+E  + YFLV+L LPLAQR+D GS +
Sbjct: 226 VKLMNGEVEYIREAGKNYFLVSLELPLAQRDDAGSVK 262


>sp|Q39557.1|PHY2_CERPU RecName: Full=Phytochrome 2 gi|1314837|gb|AAB67863.1| phytochrome
            photoreceptor CERPU;PHY0;2 [Ceratodon purpureus]
          Length = 1121

 Score =  261 bits (667), Expect = 4e-67
 Identities = 120/215 (55%), Positives = 167/215 (77%), Gaps = 1/215 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            I FTR+L+E++DL++DQKQ ++TS  CE+Q+QKV++DMDLESIEDGY+ELDT +F +G +
Sbjct: 905  ITFTRQLLEDTDLSDDQKQFLDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTV 964

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAV+SQGM   REK +Q+IR+ P ++ T+ +FGDQ RLQQ+L+DFL+NAIRFTP  +GW
Sbjct: 965  MDAVISQGMTTSREKGLQIIRETPREISTMRLFGDQIRLQQVLSDFLINAIRFTPSSEGW 1024

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGG +H +HLE R++HPG GLP EL+ +++D  K   QEG+G       
Sbjct: 1025 VKIKVVPTRKRLGGNVHVMHLEFRVSHPGGGLPDELVLEMYDRAKGMTQEGLGLNMCRKL 1084

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGS 644
               MNG+VQY++E  QCYF+V + LP+AQR+D  S
Sbjct: 1085 VRLMNGDVQYVRENAQCYFVVYVELPMAQRDDAAS 1119


>gb|AAB19058.1| phytochrome photoreceptor [Ceratodon purpureus]
          Length = 1121

 Score =  260 bits (665), Expect = 7e-67
 Identities = 120/215 (55%), Positives = 167/215 (77%), Gaps = 1/215 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            I FTR+L+E++DL++DQKQ ++TS  CE+Q+QKV++DMDLESIEDGY+ELDT +F +G +
Sbjct: 905  ITFTRQLLEDTDLSDDQKQFLDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTV 964

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAV+SQGM   REK +Q+IR+ P ++ T+ +FGDQ RLQQ+L+DFL+NAIRFTP  +GW
Sbjct: 965  MDAVISQGMTTSREKGLQIIRETPREISTMRLFGDQIRLQQVLSDFLINAIRFTPSSEGW 1024

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGG +H +HLE R++HPG GLP EL+ +++D  K   QEG+G       
Sbjct: 1025 VKIKVVPTRKRLGGNVHVMHLEFRVSHPGGGLPDELVLEMYDRGKGMTQEGLGLNMCRKL 1084

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGS 644
               MNG+VQY++E  QCYF+V + LP+AQR+D  S
Sbjct: 1085 VRLMNGDVQYVRENAQCYFVVYVELPMAQRDDAAS 1119


>gb|AAM94956.1| phytochrome [Ceratodon purpureus]
          Length = 1126

 Score =  258 bits (660), Expect = 3e-66
 Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            IMFTR LME++DL+++QKQ ++TS  CERQ++K++DDMDLESIEDGY+EL+T +  LG +
Sbjct: 910  IMFTRNLMEDTDLSDEQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETAESELGSM 969

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            +DAVVSQGMI  REK +QLIR+ P ++  + +FGDQ RLQ +LADFLLNA+R TP  +GW
Sbjct: 970  MDAVVSQGMITSREKGLQLIRETPREINDMSLFGDQVRLQHVLADFLLNAVRLTPSSEGW 1029

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGGG H VHLE R+ HPGSGLP EL+ ++FD  +   QEG+G       
Sbjct: 1030 VGIKVVPTKKRLGGGFHVVHLEFRVAHPGSGLPEELVHEMFDRGRGMTQEGLGLSMCRKL 1089

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGSAR 650
               MNGEV+YI++  + YFLVNL LPL  R++ G  R
Sbjct: 1090 VKLMNGEVKYIRDTGKSYFLVNLELPLTVRDESGMLR 1126


>ref|XP_001778155.1| phytochrome 1 [Physcomitrella patens] gi|139001617|dbj|BAF51707.1|
            phytochrome1 [Physcomitrella patens]
            gi|162670477|gb|EDQ57045.1| phytochrome 1 [Physcomitrella
            patens]
          Length = 1123

 Score =  258 bits (659), Expect = 4e-66
 Identities = 117/215 (54%), Positives = 166/215 (77%), Gaps = 1/215 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            I FTR+L+E++DL++DQ+Q ++TS  CE+Q+QKV++DMDLESIEDGY+ELDT +F +G +
Sbjct: 907  ITFTRQLLEDTDLSDDQQQFLDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTV 966

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            ++AV+SQGM   REK +Q+ R+ P ++ T+ + GDQ RLQQ+L+DFLLN +RFTP P+GW
Sbjct: 967  MNAVISQGMTTSREKGLQIFRETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGW 1026

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGG +H VHLE R++HPG+GLP EL+ +++D  K   QEG+G       
Sbjct: 1027 VKIKVVPTRKRLGGSVHVVHLEFRVSHPGAGLPEELVLEMYDRGKGMTQEGLGLNMCRKL 1086

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGS 644
               MNG+V Y++E  QCYF+VN+ LP+AQR+D  S
Sbjct: 1087 VRLMNGDVHYVREAMQCYFVVNVELPMAQRDDASS 1121


>gb|AAM94953.1| phytochrome [Physcomitrella patens]
          Length = 1123

 Score =  258 bits (659), Expect = 4e-66
 Identities = 117/215 (54%), Positives = 166/215 (77%), Gaps = 1/215 (0%)
 Frame = +3

Query: 3    IMFTRRLMEESDLTEDQKQLIETSIACERQMQKVMDDMDLESIEDGYMELDTIDFFLGPI 182
            I FTR+L+E++DL++DQ+Q ++TS  CE+Q+QKV++DMDLESIEDGY+ELDT +F +G +
Sbjct: 907  ITFTRQLLEDTDLSDDQQQFLDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTV 966

Query: 183  IDAVVSQGMIALREKDIQLIRDIPDDVKTICVFGDQTRLQQILADFLLNAIRFTP-PQGW 359
            ++AV+SQGM   REK +Q+ R+ P ++ T+ + GDQ RLQQ+L+DFLLN +RFTP P+GW
Sbjct: 967  MNAVISQGMTTSREKGLQIFRETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGW 1026

Query: 360  VAIKVLPLIKQLGGGLHTVHLEIRITHPGSGLPAELIQDLFDGTKRANQEGVGXXXXXXX 539
            V IKV+P  K+LGG +H VHLE R++HPG+GLP EL+ +++D  K   QEG+G       
Sbjct: 1027 VKIKVVPTRKRLGGSVHVVHLEFRVSHPGAGLPEELVLEMYDRGKGMTQEGLGLNMCRKL 1086

Query: 540  XXXMNGEVQYIKEPEQCYFLVNLNLPLAQREDVGS 644
               MNG+V Y++E  QCYF+VN+ LP+AQR+D  S
Sbjct: 1087 VRLMNGDVHYVREAMQCYFVVNVELPMAQRDDASS 1121