BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00019143
         (1243 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40240.3| unnamed protein product [Vitis vinifera]              193   1e-46
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]   192   1e-46
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   192   3e-46
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|16...   191   4e-46
gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]   191   5e-46
ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898...   191   5e-46
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   191   5e-46
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...   189   2e-45
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   189   3e-45
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         189   3e-45
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   189   3e-45
gb|ABA99612.1| retrotransposon protein, putative, unclassified [...   188   5e-45
emb|CAB75932.1| putative protein [Arabidopsis thaliana]               187   6e-45
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   187   8e-45
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]   185   1e-44
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   187   1e-44
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...   186   1e-44
emb|CAN62929.1| hypothetical protein VITISV_041092 [Vitis vinifera]   186   1e-44
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   186   1e-44
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   186   2e-44

>emb|CBI40240.3| unnamed protein product [Vitis vinifera]
          Length = 2196

 Score =  193 bits (490), Expect = 1e-46
 Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 5/362 (1%)
 Frame = +3

Query: 165  QNLQI*PESKETMPKETQSTHS*RQTTINSKNSQAWYLDSCCSSHMTANKDLFTNLVMIT 344
            QN  +  E K        ++ +     ++S     W +DS C+SHMT    +FT++    
Sbjct: 300  QNANVTEEDKNDDEHLFMASQALSSHELSSHELNTWLIDSGCTSHMTKYLSIFTSIDRSV 359

Query: 345  QKSTVRTAGKEKLQVIGEGLVILTLGNKKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVA 524
            Q   V+    E +Q  G+G + ++   +  ++  VL +  L +NLLS  +++++G+++  
Sbjct: 360  QPK-VKLGNGEVVQAKGKGTIAISTKRRTKIVTNVLYIPDLDQNLLSVAQMLRNGYAVFF 418

Query: 525  DYNKYGDSNIRIFFHNRPIGIEQAEGNIYILGKHDKTTNLCQEESD--FLWHYRLGHINS 698
              N    +N+    H + I   +  GN + L       ++   + D   +WH R GH N 
Sbjct: 419  KGNFCFITNV----HGKEIAKIKMNGNNFYLKLDLVEGHVFSAKIDESVVWHKRYGHFNL 474

Query: 699  KYLRRIKKSSTLK---ELKISDEKCEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGS 869
            K LR ++++  ++   E+ ++ + CE     K  + PFP+ +S K    L+LI+SD+CG 
Sbjct: 475  KSLRFMQEAGMVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKKATHKLELINSDICGP 534

Query: 870  METMTRKRQRYFLCFIDDYTKMNWVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD* 1049
            M T +     YF  FIDD ++M WVY + +K Q   +FK F K ++ +    +  LRTD 
Sbjct: 535  MSTASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSVFKSFKKMVETQSGQNVKVLRTDN 594

Query: 1050 GVELISKGMEEFFKQKGIIRELT*PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWG 1229
            G E ISK +  F ++ GI+ +L  PY+PQ NG+ ER+NRT++EM R ML +  + K  W 
Sbjct: 595  GGEYISKELNVFCQEAGIVHQLIAPYSPQQNGVFERKNRTVMEMARCMLFEKKLPKLLWA 654

Query: 1230 YA 1235
             A
Sbjct: 655  EA 656


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score =  192 bits (487), Expect(2) = 1e-46
 Identities = 107/335 (31%), Positives = 181/335 (54%), Gaps = 5/335 (1%)
 Frame = +3

Query: 246  INSKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGN 425
            ++S     W +DS C+SHMT +  +FT++    Q   V+    E +Q  G+G + ++   
Sbjct: 308  LSSHELNTWLIDSGCTSHMTKHLSIFTSIDRSVQPK-VKLGNGEVVQAKGKGTIAISTKR 366

Query: 426  KKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGN 605
               ++  VL +  L +NLLS  +++++G+++    N    S++    H   I   +  GN
Sbjct: 367  GTKIVTNVLYIPDLDQNLLSVAQMLRNGYAVSFKENFCFISDV----HGTKIAKIKMNGN 422

Query: 606  IYILGKHDKTTNLCQEESD--FLWHYRLGHINSKYLRRIKKSSTLK---ELKISDEKCEY 770
             + L       ++   + D   +WH R GH N K LR ++++  ++   E+ ++ + CE 
Sbjct: 423  SFYLKLDLVEGHVFSAKIDESVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCES 482

Query: 771  SC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYL 950
                K  + PFP+ +S +    L+LIHSD+CG M T +     YF  FIDD+++M WVY 
Sbjct: 483  CELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYF 542

Query: 951  MHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYN 1130
            + +K Q   +FK F K ++ +    +  LRTD G E  SK    F ++ GI+ +LT PY+
Sbjct: 543  LKTKSQVLSMFKSFKKMVETQSGQNVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPYS 602

Query: 1131 PQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            PQ NG+++R+NRT++EM R ML +  + K  W  A
Sbjct: 603  PQQNGVSKRKNRTVMEMARCMLFEKKLPKLLWAEA 637



 Score = 22.7 bits (47), Expect(2) = 1e-46
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 136 HICDMKGNDTKICRFNLKARRQCRRKHKAHIAEDK 240
           + C+  G+  K CR   K  +    +H +   EDK
Sbjct: 261 NFCNKLGHSEKYCRAKKKQSQHQPEQHASVTEEDK 295


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  192 bits (487), Expect = 3e-46
 Identities = 118/335 (35%), Positives = 185/335 (55%), Gaps = 12/335 (3%)
 Frame = +3

Query: 258  NSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKF- 434
            ++  W+LDS CS+HMT  K LF  L   + K  V+    +++ V G+G++ +  G+    
Sbjct: 302  SNNIWFLDSGCSNHMTGIKSLFKELDE-SHKLKVKLGDDKQVXVEGKGIMAVNNGHGNVK 360

Query: 435  LIKQVLLVEGLTKNLLSYQKLIQHGFSMVAD------YNKYGDSNIRIFFHNRPIGIEQA 596
            L+  V  +  LT+NLLS  +L+  G+S++ D       +K  D  I        + +  A
Sbjct: 361  LLYNVYFIPSLTQNLLSVGQLMVSGYSILFDGATCVIKDKKSDQII--------VNVRMA 412

Query: 597  EGNIYIL--GKHDKTTNLCQEESDF-LWHYRLGHINSKYLRRIKKSSTLKELKISDEK-- 761
               ++ L     +K   + +E S+  LWH R GH+N K L+ + K   +  L   D    
Sbjct: 413  ANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNV 472

Query: 762  CEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNW 941
            CE     K  K PFPK  S + +  L++IH+DLCG M+T +    RYFL F DD+++M+W
Sbjct: 473  CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSW 532

Query: 942  VYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT* 1121
            VY + SK + F  FK+F   ++ +    I  LRTD G E +S   + F +++G+ RELT 
Sbjct: 533  VYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTT 592

Query: 1122 PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWW 1226
            PY+P+ NG+AER+NRT+VEM R+M+    +S  +W
Sbjct: 593  PYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFW 627


>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|168251067|gb|ACA21850.1| Fourf
            gag/pol protein [Zea mays]
          Length = 1279

 Score =  191 bits (486), Expect = 4e-46
 Identities = 118/335 (35%), Positives = 180/335 (53%), Gaps = 7/335 (2%)
 Frame = +3

Query: 258  NSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKFL 437
            NS  W++DS  + H+ A+  +FT+   + +   +      +  V+G G VIL   + K +
Sbjct: 272  NSPEWWMDSGANIHVCADASMFTSY-QVGRSGALLMGNGSRAHVLGVGTVILKFTSGKTV 330

Query: 438  -IKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGNIYI 614
             +K V  V  + KNL+S   L + G+ +V + NK   S      H   +G     G ++ 
Sbjct: 331  PLKSVQHVPSIKKNLVSASMLCRDGYKVVLESNKCVVSK-----HGTFVGKGYECGGLFR 385

Query: 615  LGKHDKTTNLCQ-----EESDFLWHYRLGHINSKYLRRIKKSSTLKELK-ISDEKCEYSC 776
            L  HD    L       +ESD LWH R  H +   L R+   + + +   +   KC    
Sbjct: 386  LSLHDVCNKLVNSVNFSDESD-LWHSRFCHASFGCLMRLANINLIPKFNLVKKSKCHVCV 444

Query: 777  *HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYLMH 956
              K  + P  K    ++  PL+L+HSDLC     +T+  +RYFL FIDD T+  +VYL+ 
Sbjct: 445  ESKQPRKPH-KAAEARSLAPLELVHSDLCEMNGILTKGGKRYFLTFIDDSTRFCYVYLLK 503

Query: 957  SKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYNPQ 1136
            +KD+ F  FK +  E++N+L  KI  LR+D G E  S   +EF  + GII E T P++PQ
Sbjct: 504  TKDEAFNYFKAYKAEVENQLERKIKRLRSDRGGEFFSNLFDEFCVEHGIIHERTPPFSPQ 563

Query: 1137 *NGIAERRNRTIVEMIRAMLNQSGISKSWWGYACL 1241
             NGIAER+NRT+ +++ AML+ +G+SK+WWG A L
Sbjct: 564  SNGIAERKNRTLTDLVNAMLSTAGLSKAWWGEAIL 598


>gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]
          Length = 1292

 Score =  191 bits (485), Expect = 5e-46
 Identities = 118/335 (35%), Positives = 180/335 (53%), Gaps = 7/335 (2%)
 Frame = +3

Query: 258  NSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKFL 437
            NS  W++DS  + H+ A+  +FT+   + +   +      +  V+G G VIL   + K +
Sbjct: 312  NSPEWWMDSGANIHVCADASMFTSY-QVGRSGALLMGNGSRAHVLGVGTVILKFTSGKTV 370

Query: 438  -IKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGNIYI 614
             +K V  V  + KNL+S   L + G+ +V + NK   S      H   +G     G ++ 
Sbjct: 371  PLKSVQHVPSIKKNLVSASMLCRDGYKVVLESNKCVVSK-----HGTFVGKGYDCGGLFR 425

Query: 615  LGKHDKTTNLCQ-----EESDFLWHYRLGHINSKYLRRIKKSSTLKELK-ISDEKCEYSC 776
            L  HD    L       +ESD LWH R  H +   L R+   + + +   +   KC    
Sbjct: 426  LSLHDVCNKLVNSVHFSDESD-LWHSRFCHASFGCLMRLANINLIPKFNLVKKSKCHVCV 484

Query: 777  *HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYLMH 956
              K  + P  K    ++  PL+L+HSDLC     +T+  +RYFL FIDD T+  +VYL+ 
Sbjct: 485  ESKQPRKPH-KAAEARSLAPLELVHSDLCEMNGILTKGGKRYFLTFIDDSTRFCYVYLLK 543

Query: 957  SKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYNPQ 1136
            +KD+ F  FK +  E++N+L  KI  LR+D G E  S   +EF  + GII E T P++PQ
Sbjct: 544  TKDEAFNYFKAYKAEVENQLERKIKRLRSDRGGEYFSNVFDEFCVEHGIIHERTPPFSPQ 603

Query: 1137 *NGIAERRNRTIVEMIRAMLNQSGISKSWWGYACL 1241
             NGIAER+NRT+ +++ AML+ +G+SK+WWG A L
Sbjct: 604  SNGIAERKNRTLTDLVNAMLSTAGLSKAWWGEAIL 638


>ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898|gb|EDW75799.1| GK15001
            [Drosophila willistoni]
          Length = 1249

 Score =  191 bits (485), Expect = 5e-46
 Identities = 114/359 (31%), Positives = 191/359 (53%), Gaps = 9/359 (2%)
 Frame = +3

Query: 186  ESKETMPKETQSTHS*RQTTINSKNSQ-----AWYLDSCCSSHMTANKDLFTNLVMITQK 350
            + KE   K T+   + + + IN+  ++      W LDS  +SHM  +K +F++  +  +K
Sbjct: 236  DKKEKEYKYTEKMENKQCSLINALEAENMKREKWCLDSGATSHMCCDKSMFSDFSVHDEK 295

Query: 351  STVRTAGKEKLQVIGEGLVILTLGNKKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADY 530
             ++  AG   L+  G+G V +  G  K  +  VL V GL  N +S  ++I+  ++ V  +
Sbjct: 296  ISLADAGY--LRAEGKGKVTIRTGICKLTMNNVLYVPGLAGNFMSVARVIE--YNSVVHF 351

Query: 531  NKYGDSNIRIFFHNRPIGIEQAEGNIYILGKHDKTTNLCQEESDFLWHYRLGHINSKYLR 710
             K+     +I  +   I   +  GN+++     +       E   LWH R GH+N K L 
Sbjct: 352  EKH---MAKIIQNGECILKAKKIGNLFVFEAESENLFAAVGEDVSLWHKRFGHLNYKSLT 408

Query: 711  RIKKSSTLKELKISD----EKCEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMET 878
            +I     ++ L +++      C+     K H  PFPK+  ++++  LQL+HSD+CG   T
Sbjct: 409  QIASKGLVRGLSVTNFAPNTPCKTCMVSKIHVQPFPKMTESRSSELLQLVHSDVCGPFGT 468

Query: 879  MTRKRQRYFLCFIDDYTKMNWVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVE 1058
             +    RYFL FIDD ++  +VY +  KD+ FG F  F   ++ +   K+  +R+D G E
Sbjct: 469  KSLGGSRYFLTFIDDKSRRIFVYFLKGKDEVFGKFLEFKSLVERQTGKKLKCIRSDNGRE 528

Query: 1059 LISKGMEEFFKQKGIIRELT*PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
             ++   +++ K+ GI+R+LT  Y PQ NG+AER NRT+VEM R +L QSG+ ++ W  A
Sbjct: 529  YVNNAFDDYLKKNGILRQLTIAYTPQQNGVAERANRTLVEMSRCLLAQSGLCEALWAEA 587


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  191 bits (485), Expect = 5e-46
 Identities = 119/335 (35%), Positives = 183/335 (54%), Gaps = 12/335 (3%)
 Frame = +3

Query: 258  NSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKF- 434
            ++  W+LDS CS+HMT  K LF  L   + K  V+    +++QV G+G   +  G+    
Sbjct: 287  SNNIWFLDSGCSNHMTGIKSLFKELDE-SHKLKVKLGDDKQVQVEGKGTXAVNNGHGNVK 345

Query: 435  LIKQVLLVEGLTKNLLSYQKLIQHGFSMVAD------YNKYGDSNIRIFFHNRPIGIEQA 596
            L+  V  +  LT+NLLS  +L+  G+S++ D       +K  D  I        + +  A
Sbjct: 346  LLYNVYFIPSLTQNLLSVGQLMVSGYSILFDGATCVIKDKKSDQII--------VBVRMA 397

Query: 597  EGNIYIL--GKHDKTTNLCQEESDF-LWHYRLGHINSKYLRRIKKSSTLKELKISDEK-- 761
               ++ L     +K   + +E S+  LWH R GH+N K L+ + K   +  L   D    
Sbjct: 398  ANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNV 457

Query: 762  CEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNW 941
            CE     K  K PFPK  S + +  L++IH+DLCG M+T +    RYFL F DD+++M+W
Sbjct: 458  CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSW 517

Query: 942  VYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT* 1121
            VY + SK + F  FK+F   ++ +    I  LRTD G E +S   + F +++G+ RELT 
Sbjct: 518  VYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTT 577

Query: 1122 PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWW 1226
            PY+P  NG+AER+NRT+VEM R+M+    +S  +W
Sbjct: 578  PYSPXQNGVAERKNRTVVEMARSMMKAKNLSNHFW 612


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score =  189 bits (480), Expect = 2e-45
 Identities = 118/341 (34%), Positives = 177/341 (51%), Gaps = 7/341 (2%)
 Frame = +3

Query: 234  RQTTINSKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVIL 413
            RQ          W +DS C++HMT N+ LFT +     K  +R      +   G+G + +
Sbjct: 18   RQEIKEPSGGNTWLIDSGCTNHMTPNEKLFTKINR-DFKVPIRVGNGAVMMSEGKGDIEV 76

Query: 414  TLGNKKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVA--DYNKYGDSNIRIFFHNRPIG- 584
                 K  I+ VLLV  L KNLLS  ++I +G+ +    +Y    DS        + IG 
Sbjct: 77   MTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVTLKNNYCTIHDSA------RKKIGE 130

Query: 585  IEQAEGNIYILG-KHDKTTNLCQEESDFLWHYRLGHI---NSKYLRRIKKSSTLKELKIS 752
            +E    + ++    +++T  + ++E+  LWH RLGH    N K L+  +  + L +  + 
Sbjct: 131  VEMVNKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTGLPKFNVE 190

Query: 753  DEKCEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTK 932
            + KCE     K  + PFPK    +    L+LIHSD+CG M+  +    RY L FIDD T+
Sbjct: 191  EGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGSRYILTFIDDATR 250

Query: 933  MNWVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRE 1112
            M WVY + +K + F  FK+F   ++N  N +I  LR D G E +SK   EF +  GI R+
Sbjct: 251  MVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEFSEFLEGNGIERQ 310

Query: 1113 LT*PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            LT  Y+PQ N ++ERRNR++VEM RAM+    +    W  A
Sbjct: 311  LTAAYSPQQNEVSERRNRSLVEMARAMIKAKDLPLKLWAEA 351


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  189 bits (479), Expect = 3e-45
 Identities = 106/334 (31%), Positives = 179/334 (53%), Gaps = 7/334 (2%)
 Frame = +3

Query: 255  KNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKF 434
            + +  WYLDS  S+HM   K +F  L   + +  V    + K++V G+G +++ L N   
Sbjct: 330  EENHKWYLDSGASNHMCGRKSMFAELDE-SVRGNVALGDESKMEVKGKGNILIRLKNGDH 388

Query: 435  -LIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGNIY 611
              I  V  +  +  N+LS  +L++ G+ +    N     +IR    N    +  ++  ++
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNL---SIRDQESNLITKVPMSKNRMF 445

Query: 612  ILGKHD---KTTNLCQEESDFLWHYRLGHINSKYLRRIKKSSTLKELKI---SDEKCEYS 773
            +L   +   +   +C +E  +LWH R GH+N   L  + +   ++ L      ++ CE  
Sbjct: 446  VLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGC 505

Query: 774  C*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYLM 953
               K  K+ FPK  S++  +PL+LIH+D+CG ++  +  +  YFL FIDD+++  WVY +
Sbjct: 506  LLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFL 565

Query: 954  HSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYNP 1133
              K + F IFK+F   ++ +  + I T+R+D G E  SK   ++ +  GI R+LT P +P
Sbjct: 566  KEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSP 625

Query: 1134 Q*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            Q NG+AER+NRTI+EM R+ML    + K  W  A
Sbjct: 626  QQNGVAERKNRTILEMARSMLKSKRLPKELWAEA 659


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  189 bits (479), Expect = 3e-45
 Identities = 106/334 (31%), Positives = 178/334 (53%), Gaps = 7/334 (2%)
 Frame = +3

Query: 255  KNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKF 434
            K +  WYLDS  S+HM   K +F  L   + +  V    + K++V G+G +++ L N   
Sbjct: 330  KENHKWYLDSGASNHMCGRKSMFAELDE-SVRGNVALGDESKMEVKGKGNILIRLKNGDH 388

Query: 435  -LIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGNIY 611
              I  V  +  +  N+LS  +L++ G+ +    N     +IR    N    +  ++  ++
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNL---SIRDQESNLITKVPMSKNRMF 445

Query: 612  ILGKHD---KTTNLCQEESDFLWHYRLGHINSKYLRRIKKSSTLKELKI---SDEKCEYS 773
            +L   +   +   +C +E  +LWH R GH+N   L  + +   ++ L      ++ CE  
Sbjct: 446  VLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGC 505

Query: 774  C*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYLM 953
               K  K+ FPK  S++  +PL+LIH+D+CG ++  +  +  YFL FIDD+++  WVY +
Sbjct: 506  LLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFL 565

Query: 954  HSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYNP 1133
              K + F IFK+F   ++ +  + I T+R+D G E  SK   ++ +  GI R+LT P +P
Sbjct: 566  KEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSP 625

Query: 1134 Q*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            Q NG+ ER+NRTI+EM R+ML    + K  W  A
Sbjct: 626  QQNGVVERKNRTILEMARSMLKSKRLPKELWAEA 659


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  189 bits (479), Expect = 3e-45
 Identities = 106/334 (31%), Positives = 178/334 (53%), Gaps = 7/334 (2%)
 Frame = +3

Query: 255  KNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKF 434
            K +  WYLDS  S+HM   K +F  L   + +  V    + K++V G+G +++ L N   
Sbjct: 330  KENHKWYLDSGASNHMCGRKSMFAELDE-SVRGNVALGDESKMEVKGKGNILIRLKNGDH 388

Query: 435  -LIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGNIY 611
              I  V  +  +  N+LS  +L++ G+ +    N     +IR    N    +  ++  ++
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNL---SIRDQESNLITKVPMSKNRMF 445

Query: 612  ILGKHD---KTTNLCQEESDFLWHYRLGHINSKYLRRIKKSSTLKELKI---SDEKCEYS 773
            +L   +   +   +C +E  +LWH R GH+N   L  + +   ++ L      ++ CE  
Sbjct: 446  VLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGC 505

Query: 774  C*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYLM 953
               K  K+ FPK  S++  +PL+LIH+D+CG ++  +  +  YFL FIDD+++  WVY +
Sbjct: 506  LLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFL 565

Query: 954  HSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYNP 1133
              K + F IFK+F   ++ +  + I T+R+D G E  SK   ++ +  GI R+LT P +P
Sbjct: 566  KEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSP 625

Query: 1134 Q*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            Q NG+ ER+NRTI+EM R+ML    + K  W  A
Sbjct: 626  QQNGVVERKNRTILEMARSMLKSKRLPKELWAEA 659


>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1198

 Score =  188 bits (477), Expect = 5e-45
 Identities = 114/339 (33%), Positives = 183/339 (53%), Gaps = 8/339 (2%)
 Frame = +3

Query: 243  TINSKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLG 422
            T   +    W +DS C++HM A+ +LF  +   +  + +        Q  G+G V +   
Sbjct: 268  TAQEEKDDVWVIDSGCTNHMAADPNLFREMDS-SYHAKIHMGNGSIAQSEGKGTVAVQTA 326

Query: 423  NKKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFF--HNRPIGIEQA 596
            +    IK VLLV  L +NLLS  +L++HG+++      + D + +I    +NR +     
Sbjct: 327  DGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVY-----FEDFSCKILDRKNNRLVAKINM 381

Query: 597  EGNI-YILGKHDKTTNLCQEESDF--LWHYRLGHINSKYLRRIKKSSTLKELK---ISDE 758
            E NI ++L  +  T    + E D   LWH R+GH+N + L+ ++    ++ L    +  +
Sbjct: 382  EKNINFLLRMNHPTQMALRSEIDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSD 441

Query: 759  KCEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMN 938
             CE     K  +  FP   + + + PL+L+H+D+ G + T++     YF+ FIDDYT+M 
Sbjct: 442  PCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMI 501

Query: 939  WVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT 1118
            WVY +  K     IFK+F   ++N+ N KI  LR+D G E ISK  E++ +  GI R+LT
Sbjct: 502  WVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLT 561

Query: 1119 *PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
              Y+ Q NG+AER+NRTI +M  +ML   G+ KS+W  A
Sbjct: 562  AGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEA 600


>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
          Length = 1339

 Score =  187 bits (476), Expect = 6e-45
 Identities = 110/340 (32%), Positives = 180/340 (52%), Gaps = 12/340 (3%)
 Frame = +3

Query: 252  SKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKK 431
            +   + W+LDS CS+HMT +K+ F+ L     + TV+     ++ V+G+G V + +    
Sbjct: 294  ANRDEVWFLDSGCSNHMTGSKEWFSELEEGFNR-TVKLGNDTRMSVVGKGSVKVKVNGVT 352

Query: 432  FLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIE-QAEGN- 605
             +I +V  V  L  NLLS  +L + G +++       D   +++  ++   +E    GN 
Sbjct: 353  QVIPEVYYVPELRNNLLSLGQLQERGLAILIR-----DGTCKVYHPSKGAIMETNMSGNR 407

Query: 606  -IYILGKHDKTTNLC------QEESDFLWHYRLGHINSKYLRRI---KKSSTLKELKISD 755
              ++L    +  +LC       ++ + LWH R GH+N + L+ +   K    L  LK + 
Sbjct: 408  MFFLLASKPQKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATK 467

Query: 756  EKCEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKM 935
            E C      K H+    K  S K++  LQL+HSD+CG +  ++   +RY L FIDD+T+ 
Sbjct: 468  EICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRK 527

Query: 936  NWVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIREL 1115
             WVY +H K + F  FK F   ++ ++   +  LRTD G E  S    EF +  GI R+L
Sbjct: 528  TWVYFLHEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQL 587

Query: 1116 T*PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            T  + PQ NG+AER+NRTI+  +R+ML++  + K +W  A
Sbjct: 588  TAAFTPQQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEA 627


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  187 bits (475), Expect = 8e-45
 Identities = 114/339 (33%), Positives = 183/339 (53%), Gaps = 8/339 (2%)
 Frame = +3

Query: 243  TINSKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLG 422
            T   +    W +DS C++HM A+ +LF  +   +  + +        Q  G+G V +   
Sbjct: 317  TAQEEKDDVWVIDSGCTNHMAADPNLFREMDS-SYHAKIHMGNGSIAQSEGKGTVAVQTA 375

Query: 423  NKKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFF--HNRPIGIEQA 596
            +    IK VLLV  L +NLLS  +L++HG+++      + D + +I    +NR +     
Sbjct: 376  DGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVY-----FEDFSCKILDRKNNRLVAKINM 430

Query: 597  EGNIYILGKHDKTTNLC-QEESDF--LWHYRLGHINSKYLRRIKKSSTLKELK---ISDE 758
            E N   L + + TT +  + E D   LWH R+GH+N + L+ ++    ++ L    +  +
Sbjct: 431  EKNRNFLLRMNHTTQMALRSEVDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSD 490

Query: 759  KCEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMN 938
             CE     K  +  FP   + + + PL+L+H+D+ G + T++     YF+ FIDDYT+M 
Sbjct: 491  PCEGCVFGKQIRASFPHSGAWRASAPLELVHADIVGKVPTISEGGNWYFITFIDDYTRMI 550

Query: 939  WVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT 1118
            WVY +  K     IFK+F   ++N+ N KI  LR+D G E ISK  E++ +  GI R+LT
Sbjct: 551  WVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQLT 610

Query: 1119 *PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
              Y+ Q NG+AER+NRTI +M  +ML   G+ KS+W  A
Sbjct: 611  AGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEA 649


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score =  185 bits (470), Expect(2) = 1e-44
 Identities = 106/335 (31%), Positives = 178/335 (53%), Gaps = 5/335 (1%)
 Frame = +3

Query: 246  INSKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGN 425
            ++S     W +DS  +SHMT +  +FT++    Q   V+    E +Q  G+G + ++   
Sbjct: 1041 LSSHELNTWLIDSGXTSHMTKHLSIFTSIDRSVQPK-VKLGNGEXVQAKGKGTIAISTKR 1099

Query: 426  KKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGN 605
               ++  VL +  L +NLLS  +++++G+ +    N    S++    H   I   +  GN
Sbjct: 1100 GTKIVTNVLYIPDLDQNLLSVAQMLRNGYXVSFKENFCFISDV----HGTEIXKIKMNGN 1155

Query: 606  IYILGKHDKTTNLCQEESD--FLWHYRLGHINSKYLRRIKKSSTLK---ELKISDEKCEY 770
             + L       ++   + D   +WH R  H N K LR ++++  ++   E+ ++ + CE 
Sbjct: 1156 SFYLKLDLVEGHVFSAKIDESVVWHKRYXHFNLKSLRFMQEAXMVEDMPEISVNAQTCES 1215

Query: 771  SC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYL 950
                K  + PFP+ +S +    L+LIHSD+CG M T +     YF  FIDD+++M WVY 
Sbjct: 1216 CELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYF 1275

Query: 951  MHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYN 1130
            + +K Q   +FK F K ++ +    +  LRTD G E  SK    F ++ GI+ +LT PY+
Sbjct: 1276 LKTKSQVLSMFKSFKKMVETQSGQXVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPYS 1335

Query: 1131 PQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            PQ NG++ER+NRT++EM R ML +  + K  W  A
Sbjct: 1336 PQXNGVSERKNRTVMEMARCMLFEKKLPKLLWAEA 1370



 Score = 23.1 bits (48), Expect(2) = 1e-44
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 136  HICDMKGNDTKICRFNLKARRQCRRKHKAHIAEDK 240
            + C+  G+  K CR   K  +Q   +H +   E+K
Sbjct: 994  NFCNKLGHSEKYCRAKKKQSQQQPEQHASVTXEEK 1028


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  187 bits (474), Expect = 1e-44
 Identities = 105/334 (31%), Positives = 178/334 (53%), Gaps = 7/334 (2%)
 Frame = +3

Query: 255  KNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKF 434
            + +  WYLDS  S+HM   K +F  L   + +  V    + K++V G+G +++ L N   
Sbjct: 330  EENHKWYLDSGASNHMCGRKSMFAELDE-SVRGNVALGDESKMEVKGKGNILIRLKNGDH 388

Query: 435  -LIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGNIY 611
              I  V  +  +  N+LS  +L++ G+ +    N     +IR    N    +  ++  ++
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNL---SIRDKESNLITKVPMSKNRMF 445

Query: 612  ILGKHD---KTTNLCQEESDFLWHYRLGHINSKYLRRIKKSSTLKELKI---SDEKCEYS 773
            +L   +   +   +C +E  +LWH R GH+N   L  + +   ++ L      ++ CE  
Sbjct: 446  VLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGC 505

Query: 774  C*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYLM 953
                  K+ FPK  S++  +PL+LIH+D+CG ++  +  +  YFL FIDD+++  WVY +
Sbjct: 506  LLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFL 565

Query: 954  HSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYNP 1133
              K + F IFK+F   ++ +  + I T+R+D G E  SK   ++ +  GI R+LT P +P
Sbjct: 566  KEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSP 625

Query: 1134 Q*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            Q NG+AER+NRTI+EM R+ML    + K  W  A
Sbjct: 626  QQNGVAERKNRTILEMARSMLKSKRLPKELWAEA 659


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score =  186 bits (473), Expect = 1e-44
 Identities = 111/340 (32%), Positives = 185/340 (54%), Gaps = 10/340 (2%)
 Frame = +3

Query: 246  INSKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGN 425
            I++   + W +DS C++HM+ +   F  L   ++K  +R     K+   G+G + ++   
Sbjct: 316  ISTIGEETWLVDSGCTNHMSKDVRHFIALDR-SKKIIIRIGNGGKVVSEGKGDIRVSTNK 374

Query: 426  KKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGN 605
               +IK VL V  L +NLLS  ++I +G+ ++ + NK    +++     + + I+  + +
Sbjct: 375  GDHVIKDVLYVPELARNLLSVSQMISNGYRVIFEDNKCVIQDLK---GRKILDIKMKDRS 431

Query: 606  IYILGKHDKTTNLC----QEESDFLWHYRLGHIN------SKYLRRIKKSSTLKELKISD 755
              I+ K  +         +EE   LWH R GH+N       + L+ ++K    + +K   
Sbjct: 432  FPIIWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGIC 491

Query: 756  EKCEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKM 935
              CE     K  +  FPK   + TN+ L+LIHSD+CG M+T +    RYFL FIDD+++M
Sbjct: 492  AACEMG---KQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRM 548

Query: 936  NWVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIREL 1115
             WVY + +K +    FK F   ++N+   +I  LRTD G E +S+   +  ++ GI  E+
Sbjct: 549  TWVYFLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEI 608

Query: 1116 T*PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            T PY+PQ NG+AERRNRT+VEM R+M+ +  +S  +W  A
Sbjct: 609  TTPYSPQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEA 648


>emb|CAN62929.1| hypothetical protein VITISV_041092 [Vitis vinifera]
          Length = 1014

 Score =  186 bits (473), Expect = 1e-44
 Identities = 118/348 (33%), Positives = 188/348 (54%), Gaps = 19/348 (5%)
 Frame = +3

Query: 249  NSKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVIL-TLGN 425
            N   S++W +DS C++HMT ++DLF  +   T  S VR    E + V G+G V + +L  
Sbjct: 194  NGSTSKSWLVDSGCTNHMTYDQDLFREIDR-TAISKVRIGNGEYIPVKGKGTVAIESLTG 252

Query: 426  KKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEG- 602
             KF I  VL V  + +NLLS  +L++ GF              ++ F +R   I+ AEG 
Sbjct: 253  LKF-ISDVLFVPNIDQNLLSVGQLVEKGF--------------KVCFEDRNCIIKDAEGR 297

Query: 603  ---NIYILGK-------HDKTTNLCQEESD-FLWHYRLGHINSKYLRRIKKSSTLKELKI 749
               NI + GK        D+     Q E++  LWH RLGH +   +  +KK+  ++ L  
Sbjct: 298  KVFNIKMKGKSFALNMLEDEQIAAAQHENNTMLWHKRLGHFHHNVMLYMKKNQIVEGLPD 357

Query: 750  SDEK------CEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLC 911
             +E+      C+Y    K  +  FPK  + K+ + LQL+H+D+ G  +T + K  +Y++ 
Sbjct: 358  LEEELPICAACQYG---KQTRRHFPKKAAWKSTQKLQLVHTDVSGPQKTPSLKGSKYYIA 414

Query: 912  FIDDYTKMNWVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFK 1091
            FIDDYT+  W+Y +  K +   +F R+   ++N+   +I  +R+D G E  S+   +F +
Sbjct: 415  FIDDYTRFCWIYFLTYKFEVADVFLRYKVMVENQSEYRIKVIRSDNGTEYTSEKFNKFCE 474

Query: 1092 QKGIIRELT*PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
              GI  +LT PY PQ NG+ ER+NRTI+EM R +L++  + KS+W  A
Sbjct: 475  DAGIDHQLTAPYTPQQNGVVERKNRTIMEMTRCLLHEKELPKSFWAEA 522


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  186 bits (473), Expect = 1e-44
 Identities = 126/348 (36%), Positives = 186/348 (53%), Gaps = 18/348 (5%)
 Frame = +3

Query: 246  INSKNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTL-- 419
            I    +  W++DS CS+HM+++K LF +L   +QKS VR    +++ + G+G V +    
Sbjct: 303  ITESANAVWFIDSGCSNHMSSSKSLFRDLDE-SQKSEVRLGDDKQVHIEGKGTVEIKTVQ 361

Query: 420  GNKKFLIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYN-------KYGDSNIRI-FFHNR 575
            GN KFL   V  V  L  NLLS  +L+  G+S+V   N       + G +  R+    N+
Sbjct: 362  GNVKFLY-DVQYVPTLAHNLLSVGQLMTSGYSVVFYDNACDIKDKESGRTIARVPMTQNK 420

Query: 576  --PIGIEQAEGNIYILGKHDKTTNLCQEESDFLWHYRLGHINSKYLRRIKKSS------T 731
              P+ I    GN  ++ K    TNL        WH R GH+N  +L+ + +         
Sbjct: 421  MFPLDISNV-GNSALVVKEKNETNL--------WHLRYGHLNVNWLKLLVQKDMVIGLPN 471

Query: 732  LKELKISDEKCEYSC*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLC 911
            +KEL +  E C Y    K  +  FP   S +    L+L+H+DLCG M+  +    RYFL 
Sbjct: 472  IKELDLC-EGCIYG---KQTRKSFPVGKSWRATTCLELVHADLCGPMKMESLGGSRYFLM 527

Query: 912  FIDDYTKMNWVYLMHSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFK 1091
            F DDY++ +WVY +  K + F  FK+F   ++N+   KI +LRTD G E +S     F +
Sbjct: 528  FTDDYSRFSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCE 587

Query: 1092 QKGIIRELT*PYNPQ*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            + GI RELT PY P+ NG+AER+NRT+VEM R+ L   G+   +WG A
Sbjct: 588  ENGIRRELTAPYTPEQNGVAERKNRTVVEMARSSLKAKGLPDYFWGEA 635


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  186 bits (471), Expect = 2e-44
 Identities = 105/334 (31%), Positives = 178/334 (53%), Gaps = 7/334 (2%)
 Frame = +3

Query: 255  KNSQAWYLDSCCSSHMTANKDLFTNLVMITQKSTVRTAGKEKLQVIGEGLVILTLGNKKF 434
            + +  WYLDS  S+HM   K +F  L   + +  V    + K++V G+G +++ L N   
Sbjct: 330  EENHKWYLDSGASNHMCGRKSMFAELDE-SVRGNVALGDESKMEVKGKGNILIRLKNGDH 388

Query: 435  -LIKQVLLVEGLTKNLLSYQKLIQHGFSMVADYNKYGDSNIRIFFHNRPIGIEQAEGNIY 611
              I  V  +  +  N+LS  +L++ G+ +    N     +IR    N    +  ++  ++
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNL---SIRDQESNLITKVPMSKNRMF 445

Query: 612  ILGKHD---KTTNLCQEESDFLWHYRLGHINSKYLRRIKKSSTLKELKI---SDEKCEYS 773
            +L   +   +   +C +E  +LWH R GH+N   L  + +   ++ L      ++ CE  
Sbjct: 446  VLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGC 505

Query: 774  C*HKSHKLPFPKIVSNKTNRPLQLIHSDLCGSMETMTRKRQRYFLCFIDDYTKMNWVYLM 953
               K  K+ FPK  S++  + L+LIH+D+CG ++  +  +  YFL FIDD+++  WVY +
Sbjct: 506  LLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFL 565

Query: 954  HSKDQFFGIFKRFHKEIQNKLNMKIFTLRTD*GVELISKGMEEFFKQKGIIRELT*PYNP 1133
              K + F IFK+F   ++ +  + I T+R+D G E  SK   ++ +  GI R+LT P +P
Sbjct: 566  KEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSP 625

Query: 1134 Q*NGIAERRNRTIVEMIRAMLNQSGISKSWWGYA 1235
            Q NG+AER+NRTI+EM R+ML    + K  W  A
Sbjct: 626  QQNGVAERKNRTILEMARSMLKSKRLPKELWAEA 659