BLASTX nr result
ID: Ephedra28_contig00018908
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00018908
(384 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001770727.1| predicted protein [Physcomitrella patens] gi... 101 1e-19
ref|XP_005842382.1| hypothetical protein GUITHDRAFT_83772 [Guill... 69 9e-10
gb|ETW03462.1| hypothetical protein, variant [Aphanomyces invadans] 66 6e-09
gb|ETW03461.1| hypothetical protein H310_04918 [Aphanomyces inva... 66 6e-09
ref|XP_006806722.1| PREDICTED: DNA polymerase sigma-like isoform... 65 7e-09
ref|XP_006806721.1| PREDICTED: DNA polymerase sigma-like isoform... 65 7e-09
ref|XP_005745534.1| PREDICTED: DNA polymerase sigma-like [Pundam... 65 7e-09
ref|XP_005450864.1| PREDICTED: DNA polymerase sigma-like [Oreoch... 65 7e-09
ref|XP_004563710.1| PREDICTED: DNA polymerase sigma-like isoform... 65 7e-09
ref|XP_004563709.1| PREDICTED: DNA polymerase sigma-like isoform... 65 7e-09
ref|XP_005937344.1| PREDICTED: DNA polymerase sigma-like [Haploc... 65 1e-08
ref|XP_001697200.1| trf4 poly(A) polymerase [Chlamydomonas reinh... 65 1e-08
gb|ETV85174.1| hypothetical protein, variant 2 [Aphanomyces asta... 64 2e-08
gb|ETV85173.1| hypothetical protein, variant 1 [Aphanomyces astaci] 64 2e-08
gb|ETV85172.1| hypothetical protein H257_03008 [Aphanomyces astaci] 64 2e-08
ref|XP_001768300.1| predicted protein [Physcomitrella patens] gi... 64 2e-08
gb|ELW70170.1| DNA polymerase sigma [Tupaia chinensis] 64 2e-08
gb|EPS69537.1| hypothetical protein M569_05225, partial [Genlise... 64 3e-08
gb|EHJ72600.1| hypothetical protein KGM_01329 [Danaus plexippus] 64 3e-08
ref|XP_002500013.1| predicted protein [Micromonas sp. RCC299] gi... 64 3e-08
>ref|XP_001770727.1| predicted protein [Physcomitrella patens] gi|162677945|gb|EDQ64409.1|
predicted protein [Physcomitrella patens]
Length = 1560
Score = 101 bits (251), Expect = 1e-19
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 10/125 (8%)
Frame = -2
Query: 347 PAAEF--NLYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFA 174
P+ +F N+ LH EILE+A P+ E + EAA++CVR AVK LWP D+EV+GS+A
Sbjct: 1028 PSQQFLTNVEELHSEILEFAHTASPSAEARSCAEAAIDCVRGAVKKLWPNADVEVFGSYA 1087
Query: 173 TGLCLSKSDVDLLVVNEXXXXXXXPETSGRPPQL--------ITVLGDHIRKYPWCKSLM 18
TGLCLS SDVD++VV+ T +L I +LG ++ Y WCKS+
Sbjct: 1088 TGLCLSHSDVDVVVVDAPPPLKLPDTTGLTGTRLVASLLAPSIRLLGAALQDYDWCKSIR 1147
Query: 17 TVENA 3
T+++A
Sbjct: 1148 TIDSA 1152
>ref|XP_005842382.1| hypothetical protein GUITHDRAFT_83772 [Guillardia theta CCMP2712]
gi|428186552|gb|EKX55402.1| hypothetical protein
GUITHDRAFT_83772 [Guillardia theta CCMP2712]
Length = 440
Score = 68.6 bits (166), Expect = 9e-10
Identities = 37/105 (35%), Positives = 52/105 (49%)
Frame = -2
Query: 320 LHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVD 141
LH EI+E V P T R + V+ V +AVKS W +EVYGSF+T L L SDVD
Sbjct: 97 LHSEIVELLNQVYPTNSTRTRRQRIVDLVDEAVKSCWEGAHVEVYGSFSTDLYLPHSDVD 156
Query: 140 LLVVNEXXXXXXXPETSGRPPQLITVLGDHIRKYPWCKSLMTVEN 6
+LV+ + L ++ PWC+ + ++EN
Sbjct: 157 VLVIGAKEWSI---------ESKMKHLASRLKSMPWCRYMRSIEN 192
>gb|ETW03462.1| hypothetical protein, variant [Aphanomyces invadans]
Length = 540
Score = 65.9 bits (159), Expect = 6e-09
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = -2
Query: 320 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
LH EI+EYAR + E +E +E VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 63 LHQEIVEYARYTRAIVSEMAVHIEKTIELVRTSVRKLWPEATVETYGSYSTGIWLPSSDI 122
Query: 143 DLLVVNEXXXXXXXPETSGRPPQLITVLGDHIRKYPWCKSLMTVENA 3
DL+++ TS + L ++ W +S++ VE+A
Sbjct: 123 DLVILG----------TSDDASANLKRLAASLKHEKWVESILLVESA 159
>gb|ETW03461.1| hypothetical protein H310_04918 [Aphanomyces invadans]
Length = 580
Score = 65.9 bits (159), Expect = 6e-09
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = -2
Query: 320 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
LH EI+EYAR + E +E +E VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 103 LHQEIVEYARYTRAIVSEMAVHIEKTIELVRTSVRKLWPEATVETYGSYSTGIWLPSSDI 162
Query: 143 DLLVVNEXXXXXXXPETSGRPPQLITVLGDHIRKYPWCKSLMTVENA 3
DL+++ TS + L ++ W +S++ VE+A
Sbjct: 163 DLVILG----------TSDDASANLKRLAASLKHEKWVESILLVESA 199
>ref|XP_006806722.1| PREDICTED: DNA polymerase sigma-like isoform X2 [Neolamprologus
brichardi]
Length = 777
Score = 65.5 bits (158), Expect = 7e-09
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = -2
Query: 323 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
GLH+E++++ + + P E A + V + +K LWP D+++YGSF+TGL L SD+
Sbjct: 273 GLHEEVMDFYKYISPRPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDI 332
Query: 143 DLLVVNE 123
DL+V +
Sbjct: 333 DLMVTGK 339
>ref|XP_006806721.1| PREDICTED: DNA polymerase sigma-like isoform X1 [Neolamprologus
brichardi]
Length = 817
Score = 65.5 bits (158), Expect = 7e-09
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = -2
Query: 323 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
GLH+E++++ + + P E A + V + +K LWP D+++YGSF+TGL L SD+
Sbjct: 273 GLHEEVMDFYKYISPRPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDI 332
Query: 143 DLLVVNE 123
DL+V +
Sbjct: 333 DLMVTGK 339
>ref|XP_005745534.1| PREDICTED: DNA polymerase sigma-like [Pundamilia nyererei]
Length = 776
Score = 65.5 bits (158), Expect = 7e-09
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = -2
Query: 323 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
GLH+E++++ + + P E A + V + +K LWP D+++YGSF+TGL L SD+
Sbjct: 272 GLHEEVMDFYKYISPRPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDI 331
Query: 143 DLLVVNE 123
DL+V +
Sbjct: 332 DLMVTGK 338
>ref|XP_005450864.1| PREDICTED: DNA polymerase sigma-like [Oreochromis niloticus]
Length = 823
Score = 65.5 bits (158), Expect = 7e-09
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = -2
Query: 323 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
GLH+E++++ + + P E A + V + +K LWP D+++YGSF+TGL L SD+
Sbjct: 272 GLHEEVMDFYKYISPRPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDI 331
Query: 143 DLLVVNE 123
DL+V +
Sbjct: 332 DLMVTGK 338
>ref|XP_004563710.1| PREDICTED: DNA polymerase sigma-like isoform X2 [Maylandia zebra]
Length = 777
Score = 65.5 bits (158), Expect = 7e-09
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = -2
Query: 323 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
GLH+E++++ + + P E A + V + +K LWP D+++YGSF+TGL L SD+
Sbjct: 273 GLHEEVMDFYKYISPRPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDI 332
Query: 143 DLLVVNE 123
DL+V +
Sbjct: 333 DLMVTGK 339
>ref|XP_004563709.1| PREDICTED: DNA polymerase sigma-like isoform X1 [Maylandia zebra]
Length = 817
Score = 65.5 bits (158), Expect = 7e-09
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = -2
Query: 323 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
GLH+E++++ + + P E A + V + +K LWP D+++YGSF+TGL L SD+
Sbjct: 273 GLHEEVMDFYKYISPRPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDI 332
Query: 143 DLLVVNE 123
DL+V +
Sbjct: 333 DLMVTGK 339
>ref|XP_005937344.1| PREDICTED: DNA polymerase sigma-like [Haplochromis burtoni]
Length = 777
Score = 64.7 bits (156), Expect = 1e-08
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = -2
Query: 323 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
GLH+E++ + + + P E A + V + +K LWP D+++YGSF+TGL L SD+
Sbjct: 273 GLHEEVMNFYKYISPRPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDI 332
Query: 143 DLLVVNE 123
DL+V +
Sbjct: 333 DLMVTGK 339
>ref|XP_001697200.1| trf4 poly(A) polymerase [Chlamydomonas reinhardtii]
gi|158274674|gb|EDP00455.1| trf4 poly(A) polymerase
[Chlamydomonas reinhardtii]
Length = 1144
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = -2
Query: 338 EFNLYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCL 159
E L LH E++E +V+P E A AV VR+ V S+WP+ +EV+GS+ATGL +
Sbjct: 302 ESPLLRLHQELVELCELVQPTPEEAAARAGAVAAVREVVGSIWPSARVEVFGSYATGLYV 361
Query: 158 SKSDVDLLVVN 126
SDVDL++++
Sbjct: 362 PTSDVDLVILD 372
>gb|ETV85174.1| hypothetical protein, variant 2 [Aphanomyces astaci]
gi|574119696|gb|ETV85175.1| hypothetical protein,
variant 3 [Aphanomyces astaci]
Length = 470
Score = 64.3 bits (155), Expect = 2e-08
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = -2
Query: 320 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
LH EI++YAR + E +E ++ VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 4 LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 63
Query: 143 DLLVVNEXXXXXXXPETSGRPPQLITVLGDHIRKYPWCKSLMTVENA 3
DL+++ TS + L ++ W +S++ VE+A
Sbjct: 64 DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESA 100
>gb|ETV85173.1| hypothetical protein, variant 1 [Aphanomyces astaci]
Length = 490
Score = 64.3 bits (155), Expect = 2e-08
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = -2
Query: 320 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
LH EI++YAR + E +E ++ VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 24 LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 83
Query: 143 DLLVVNEXXXXXXXPETSGRPPQLITVLGDHIRKYPWCKSLMTVENA 3
DL+++ TS + L ++ W +S++ VE+A
Sbjct: 84 DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESA 120
>gb|ETV85172.1| hypothetical protein H257_03008 [Aphanomyces astaci]
Length = 575
Score = 64.3 bits (155), Expect = 2e-08
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = -2
Query: 320 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
LH EI++YAR + E +E ++ VR +V+ LWP +E YGS++TG+ L SD+
Sbjct: 109 LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 168
Query: 143 DLLVVNEXXXXXXXPETSGRPPQLITVLGDHIRKYPWCKSLMTVENA 3
DL+++ TS + L ++ W +S++ VE+A
Sbjct: 169 DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESA 205
>ref|XP_001768300.1| predicted protein [Physcomitrella patens]
gi|162680478|gb|EDQ66914.1| predicted protein
[Physcomitrella patens]
Length = 787
Score = 64.3 bits (155), Expect = 2e-08
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = -2
Query: 329 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 150
L LH EI+++ V P +E E AVE V V+S+WP ++V+GSFATGL L S
Sbjct: 200 LLQLHQEIVDFCEFVAPTEEEQQMRETAVERVSGVVQSIWPHSQVKVFGSFATGLYLPTS 259
Query: 149 DVDLLVVN 126
DVD++V++
Sbjct: 260 DVDVVVLD 267
>gb|ELW70170.1| DNA polymerase sigma [Tupaia chinensis]
Length = 729
Score = 63.9 bits (154), Expect = 2e-08
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = -2
Query: 323 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 144
GLH+EI+++ + P E A V+ + VK LWPA D++++GSF+TGL L SD+
Sbjct: 56 GLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPAADVQIFGSFSTGLYLPTSDI 115
Query: 143 DLLV 132
DL+V
Sbjct: 116 DLVV 119
>gb|EPS69537.1| hypothetical protein M569_05225, partial [Genlisea aurea]
Length = 414
Score = 63.5 bits (153), Expect = 3e-08
Identities = 28/64 (43%), Positives = 41/64 (64%)
Frame = -2
Query: 320 LHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVD 141
LH EILE++ + P E R AAVE V +K +WP +E++GSF TGL L SD+D
Sbjct: 113 LHKEILEFSDFLSPTPEEGQRRLAAVEAVSDVIKYIWPCSQVEIFGSFKTGLYLPSSDID 172
Query: 140 LLVV 129
++++
Sbjct: 173 VVIL 176
>gb|EHJ72600.1| hypothetical protein KGM_01329 [Danaus plexippus]
Length = 564
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/82 (37%), Positives = 48/82 (58%)
Frame = -2
Query: 368 VPVYNFFPAAEFNLYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEV 189
+P YN+ P + GLH+EI + + P++ + V +R A+ SLWP +EV
Sbjct: 102 IPNYNYKPG----VLGLHEEIEHFYMYMSPSETEHLVRTTVVTRIRSAILSLWPQARVEV 157
Query: 188 YGSFATGLCLSKSDVDLLVVNE 123
+GSF TGL L SD+DL+V+ +
Sbjct: 158 FGSFRTGLYLPTSDIDLVVIGQ 179
>ref|XP_002500013.1| predicted protein [Micromonas sp. RCC299]
gi|226515275|gb|ACO61271.1| predicted protein, partial
[Micromonas sp. RCC299]
Length = 292
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 329 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 150
L LH EI+++ R ++P E + AAVE VR AV S+WP EV+GSFATG+ L S
Sbjct: 1 LIRLHHEIVDFCRYLEPTAEESSARTAAVERVRGAVLSIWPGARFEVHGSFATGMYLPNS 60
Query: 149 DVDLLVV 129
D+D +++
Sbjct: 61 DIDAVIL 67