BLASTX nr result
ID: Ephedra28_contig00018907
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00018907
(405 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001770727.1| predicted protein [Physcomitrella patens] gi... 87 2e-15
ref|XP_006806722.1| PREDICTED: DNA polymerase sigma-like isoform... 67 2e-09
ref|XP_006806721.1| PREDICTED: DNA polymerase sigma-like isoform... 67 2e-09
ref|XP_005745534.1| PREDICTED: DNA polymerase sigma-like [Pundam... 67 3e-09
ref|XP_005450864.1| PREDICTED: DNA polymerase sigma-like [Oreoch... 67 3e-09
ref|XP_004563710.1| PREDICTED: DNA polymerase sigma-like isoform... 67 3e-09
ref|XP_004563709.1| PREDICTED: DNA polymerase sigma-like isoform... 67 3e-09
ref|XP_005937344.1| PREDICTED: DNA polymerase sigma-like [Haploc... 66 5e-09
gb|EHJ72600.1| hypothetical protein KGM_01329 [Danaus plexippus] 65 9e-09
ref|XP_001697200.1| trf4 poly(A) polymerase [Chlamydomonas reinh... 65 1e-08
ref|XP_001768300.1| predicted protein [Physcomitrella patens] gi... 64 2e-08
ref|XP_006779833.1| PREDICTED: PAP-associated domain-containing ... 64 2e-08
ref|XP_005727680.1| PREDICTED: PAP-associated domain-containing ... 64 2e-08
ref|XP_686065.5| PREDICTED: DNA polymerase sigma [Danio rerio] 64 2e-08
ref|XP_004539755.1| PREDICTED: PAP-associated domain-containing ... 64 2e-08
gb|ELW70170.1| DNA polymerase sigma [Tupaia chinensis] 64 2e-08
ref|XP_003437714.1| PREDICTED: PAP-associated domain-containing ... 64 2e-08
gb|EPS69537.1| hypothetical protein M569_05225, partial [Genlise... 64 3e-08
ref|XP_002500013.1| predicted protein [Micromonas sp. RCC299] gi... 64 3e-08
ref|XP_004913601.1| PREDICTED: PAP-associated domain-containing ... 63 3e-08
>ref|XP_001770727.1| predicted protein [Physcomitrella patens] gi|162677945|gb|EDQ64409.1|
predicted protein [Physcomitrella patens]
Length = 1560
Score = 87.4 bits (215), Expect = 2e-15
Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
Frame = +3
Query: 147 PAAEF--NLYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFA 320
P+ +F N+ LH EILE+A P+ E + EAA++CVR AVK LWP D+EV+GS+A
Sbjct: 1028 PSQQFLTNVEELHSEILEFAHTASPSAEARSCAEAAIDCVRGAVKKLWPNADVEVFGSYA 1087
Query: 321 TGLCLSKSDVDLLVVN 368
TGLCLS SDVD++VV+
Sbjct: 1088 TGLCLSHSDVDVVVVD 1103
>ref|XP_006806722.1| PREDICTED: DNA polymerase sigma-like isoform X2 [Neolamprologus
brichardi]
Length = 777
Score = 67.0 bits (162), Expect = 2e-09
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = +3
Query: 36 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 215
RK D+ +S + + S S N + ++ P + GLH+E++++ + + P
Sbjct: 232 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTRDYSPG----VLGLHEEVMDFYKYISP 287
Query: 216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNE 371
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 288 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGK 339
>ref|XP_006806721.1| PREDICTED: DNA polymerase sigma-like isoform X1 [Neolamprologus
brichardi]
Length = 817
Score = 67.0 bits (162), Expect = 2e-09
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = +3
Query: 36 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 215
RK D+ +S + + S S N + ++ P + GLH+E++++ + + P
Sbjct: 232 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTRDYSPG----VLGLHEEVMDFYKYISP 287
Query: 216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNE 371
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 288 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGK 339
>ref|XP_005745534.1| PREDICTED: DNA polymerase sigma-like [Pundamilia nyererei]
Length = 776
Score = 66.6 bits (161), Expect = 3e-09
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = +3
Query: 36 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 215
RK D+ +S + + S S N + + P + GLH+E++++ + + P
Sbjct: 231 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTREYSPG----VLGLHEEVMDFYKYISP 286
Query: 216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNE 371
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 287 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGK 338
>ref|XP_005450864.1| PREDICTED: DNA polymerase sigma-like [Oreochromis niloticus]
Length = 823
Score = 66.6 bits (161), Expect = 3e-09
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = +3
Query: 36 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 215
RK D+ +S + + S S N + + P + GLH+E++++ + + P
Sbjct: 231 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTREYSPG----VLGLHEEVMDFYKYISP 286
Query: 216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNE 371
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 287 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGK 338
>ref|XP_004563710.1| PREDICTED: DNA polymerase sigma-like isoform X2 [Maylandia zebra]
Length = 777
Score = 66.6 bits (161), Expect = 3e-09
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = +3
Query: 36 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 215
RK D+ +S + + S S N + + P + GLH+E++++ + + P
Sbjct: 232 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTREYSPG----VLGLHEEVMDFYKYISP 287
Query: 216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNE 371
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 288 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGK 339
>ref|XP_004563709.1| PREDICTED: DNA polymerase sigma-like isoform X1 [Maylandia zebra]
Length = 817
Score = 66.6 bits (161), Expect = 3e-09
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = +3
Query: 36 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 215
RK D+ +S + + S S N + + P + GLH+E++++ + + P
Sbjct: 232 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTREYSPG----VLGLHEEVMDFYKYISP 287
Query: 216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNE 371
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 288 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGK 339
>ref|XP_005937344.1| PREDICTED: DNA polymerase sigma-like [Haplochromis burtoni]
Length = 777
Score = 65.9 bits (159), Expect = 5e-09
Identities = 34/112 (30%), Positives = 57/112 (50%)
Frame = +3
Query: 36 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 215
RK D+ +S + + S S N + + P + GLH+E++ + + + P
Sbjct: 232 RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTREYSPG----VLGLHEEVMNFYKYISP 287
Query: 216 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNE 371
E A + V + +K LWP D+++YGSF+TGL L SD+DL+V +
Sbjct: 288 RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGK 339
>gb|EHJ72600.1| hypothetical protein KGM_01329 [Danaus plexippus]
Length = 564
Score = 65.1 bits (157), Expect = 9e-09
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Frame = +3
Query: 66 NLTRSSSMNFNYTINPGISS-------VPMYNFFPAAEFNLYGLHDEILEYARMVKPNQE 224
N R+S+ N N + I +P YN+ P + GLH+EI + + P++
Sbjct: 75 NDNRASTFNLNQNHDALIGEYGGCPWRIPNYNYKPG----VLGLHEEIEHFYMYMSPSET 130
Query: 225 TYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNE 371
+ V +R A+ SLWP +EV+GSF TGL L SD+DL+V+ +
Sbjct: 131 EHLVRTTVVTRIRSAILSLWPQARVEVFGSFRTGLYLPTSDIDLVVIGQ 179
>ref|XP_001697200.1| trf4 poly(A) polymerase [Chlamydomonas reinhardtii]
gi|158274674|gb|EDP00455.1| trf4 poly(A) polymerase
[Chlamydomonas reinhardtii]
Length = 1144
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = +3
Query: 156 EFNLYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCL 335
E L LH E++E +V+P E A AV VR+ V S+WP+ +EV+GS+ATGL +
Sbjct: 302 ESPLLRLHQELVELCELVQPTPEEAAARAGAVAAVREVVGSIWPSARVEVFGSYATGLYV 361
Query: 336 SKSDVDLLVVN 368
SDVDL++++
Sbjct: 362 PTSDVDLVILD 372
>ref|XP_001768300.1| predicted protein [Physcomitrella patens]
gi|162680478|gb|EDQ66914.1| predicted protein
[Physcomitrella patens]
Length = 787
Score = 64.3 bits (155), Expect = 2e-08
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +3
Query: 165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 344
L LH EI+++ V P +E E AVE V V+S+WP ++V+GSFATGL L S
Sbjct: 200 LLQLHQEIVDFCEFVAPTEEEQQMRETAVERVSGVVQSIWPHSQVKVFGSFATGLYLPTS 259
Query: 345 DVDLLVVN 368
DVD++V++
Sbjct: 260 DVDVVVLD 267
>ref|XP_006779833.1| PREDICTED: PAP-associated domain-containing protein 5-like
[Neolamprologus brichardi]
Length = 669
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Frame = +3
Query: 75 RSSSMNFNYTINPGISSVPMYNFFPAAEFN----LYGLHDEILEYARMVKPNQETYARVE 242
++S+ F+ +N Y P E N + GLH+EI+++ + P E
Sbjct: 143 KASTFGFSVILNGDNKEYVGYTGTPWKERNYSEGIIGLHEEIIDFYNYISPRPEEEKMRL 202
Query: 243 AAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLV 362
V+ +++ + LWP+ ++EV+GSF+TGL L SD+DL+V
Sbjct: 203 EVVDRIKEVIHDLWPSAEVEVFGSFSTGLYLPTSDIDLVV 242
>ref|XP_005727680.1| PREDICTED: PAP-associated domain-containing protein 5-like
[Pundamilia nyererei]
Length = 664
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Frame = +3
Query: 75 RSSSMNFNYTINPGISSVPMYNFFPAAEFN----LYGLHDEILEYARMVKPNQETYARVE 242
++S+ F+ +N Y P E N + GLH+EI+++ + P E
Sbjct: 138 KASTFGFSVILNGDNKEYVGYTGTPWKERNYSEGIIGLHEEIIDFYNYISPRPEEEKMRL 197
Query: 243 AAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLV 362
V+ +++ + LWP+ ++EV+GSF+TGL L SD+DL+V
Sbjct: 198 EVVDRIKEVIHDLWPSAEVEVFGSFSTGLYLPTSDIDLVV 237
>ref|XP_686065.5| PREDICTED: DNA polymerase sigma [Danio rerio]
Length = 762
Score = 63.9 bits (154), Expect = 2e-08
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Frame = +3
Query: 36 RKPDSNSSQH--NLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMV 209
RK D+ +S + N S+ N NY + Y+ P + GLH+EI+++ +
Sbjct: 188 RKSDNKASTYGINYLLSNWTNGNYESSGTPWKTRKYS--PGVD----GLHEEIMDFYNFM 241
Query: 210 KPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLV 362
P E + V+ + +K LWP D++++GSF+TGL L SD+DL+V
Sbjct: 242 SPRPEEATMRQEVVDRIESVIKELWPTADVQIFGSFSTGLFLPTSDIDLVV 292
>ref|XP_004539755.1| PREDICTED: PAP-associated domain-containing protein 5-like
[Maylandia zebra] gi|554804180|ref|XP_005913047.1|
PREDICTED: PAP-associated domain-containing protein
5-like [Haplochromis burtoni]
Length = 669
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Frame = +3
Query: 75 RSSSMNFNYTINPGISSVPMYNFFPAAEFN----LYGLHDEILEYARMVKPNQETYARVE 242
++S+ F+ +N Y P E N + GLH+EI+++ + P E
Sbjct: 143 KASTFGFSVILNGDNKEYVGYTGTPWKERNYSEGIIGLHEEIIDFYNYISPRPEEEKMRL 202
Query: 243 AAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLV 362
V+ +++ + LWP+ ++EV+GSF+TGL L SD+DL+V
Sbjct: 203 EVVDRIKEVIHDLWPSAEVEVFGSFSTGLYLPTSDIDLVV 242
>gb|ELW70170.1| DNA polymerase sigma [Tupaia chinensis]
Length = 729
Score = 63.9 bits (154), Expect = 2e-08
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +3
Query: 171 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 350
GLH+EI+++ + P E A V+ + VK LWPA D++++GSF+TGL L SD+
Sbjct: 56 GLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPAADVQIFGSFSTGLYLPTSDI 115
Query: 351 DLLV 362
DL+V
Sbjct: 116 DLVV 119
>ref|XP_003437714.1| PREDICTED: PAP-associated domain-containing protein 5-like
[Oreochromis niloticus]
Length = 672
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Frame = +3
Query: 75 RSSSMNFNYTINPGISSVPMYNFFPAAEFN----LYGLHDEILEYARMVKPNQETYARVE 242
++S+ F+ +N Y P E N + GLH+EI+++ + P E
Sbjct: 143 KASTFGFSVILNGDNKEYVGYTGTPWKERNYSEGIIGLHEEIIDFYNYISPRPEEEKMRL 202
Query: 243 AAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLV 362
V+ +++ + LWP+ ++EV+GSF+TGL L SD+DL+V
Sbjct: 203 EVVDRIKEVIHDLWPSAEVEVFGSFSTGLYLPTSDIDLVV 242
>gb|EPS69537.1| hypothetical protein M569_05225, partial [Genlisea aurea]
Length = 414
Score = 63.5 bits (153), Expect = 3e-08
Identities = 28/64 (43%), Positives = 41/64 (64%)
Frame = +3
Query: 174 LHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVD 353
LH EILE++ + P E R AAVE V +K +WP +E++GSF TGL L SD+D
Sbjct: 113 LHKEILEFSDFLSPTPEEGQRRLAAVEAVSDVIKYIWPCSQVEIFGSFKTGLYLPSSDID 172
Query: 354 LLVV 365
++++
Sbjct: 173 VVIL 176
>ref|XP_002500013.1| predicted protein [Micromonas sp. RCC299]
gi|226515275|gb|ACO61271.1| predicted protein, partial
[Micromonas sp. RCC299]
Length = 292
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +3
Query: 165 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 344
L LH EI+++ R ++P E + AAVE VR AV S+WP EV+GSFATG+ L S
Sbjct: 1 LIRLHHEIVDFCRYLEPTAEESSARTAAVERVRGAVLSIWPGARFEVHGSFATGMYLPNS 60
Query: 345 DVDLLVV 365
D+D +++
Sbjct: 61 DIDAVIL 67
>ref|XP_004913601.1| PREDICTED: PAP-associated domain-containing protein 5 isoform X3
[Xenopus (Silurana) tropicalis]
Length = 595
Score = 63.2 bits (152), Expect = 3e-08
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Frame = +3
Query: 30 SERKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFP----AAEFNLYGLHDEILEY 197
++RK D+ +S L N + G S V +YN P + GLH+EI+++
Sbjct: 110 NKRKRDNKASTFGL------NCLLQCSAGSSVVGLYNGTPWKTRTYSEEVIGLHEEIMDF 163
Query: 198 ARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLV 362
+ + P E V + +K LWP D++++GSF TGL L SD+DL+V
Sbjct: 164 YKYMSPRPEEEKMRMEVVNRIENVIKELWPNADVQIFGSFKTGLYLPTSDIDLVV 218