BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00018810
         (1704 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Tritic...   721   0.0  
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   720   0.0  
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   718   0.0  
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   715   0.0  
ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   715   0.0  
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                      713   0.0  
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   712   0.0  
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   712   0.0  
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   712   0.0  
ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...   711   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   708   0.0  
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]         707   0.0  
emb|CBI27412.3| unnamed protein product [Vitis vinifera]              707   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   707   0.0  
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A...   706   0.0  
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   704   0.0  
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|...   702   0.0  
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...   699   0.0  
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   697   0.0  
ref|XP_006602976.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   697   0.0  

>gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
          Length = 1005

 Score =  721 bits (1861), Expect = 0.0
 Identities = 356/571 (62%), Positives = 440/571 (77%), Gaps = 4/571 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEAVE EVR+HKFLE T         
Sbjct: 248  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVD 306

Query: 182  XXX----ADTSNLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALL 349
                   AD +    E L++K+T L+K+ K R VR ++ K D +  W    HAKVGS L+
Sbjct: 307  KVVEAVDADIAK-EQERLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLI 365

Query: 350  DMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLER 529
            ++ I+TA+IQPP  QS    PEIRPAF H  +T   E RK ++R GVI+CDPLV+QGL+R
Sbjct: 366  ELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQRK-SRRYGVIKCDPLVRQGLDR 424

Query: 530  MARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQ 709
             A+HMV PY PMLI P  W GY+KG +LFLPS+VMR HG+R+QREA+K  PK QMQ +++
Sbjct: 425  TAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFE 484

Query: 710  ALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQT 889
            ALD LGSTKWR+N+++L +V+ IW+ GG   D++ R DV LPEKP  EDE E+KKW+   
Sbjct: 485  ALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADLVDRADVSLPEKPDTEDEAELKKWRWSM 544

Query: 890  WEAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1069
              AE++N   +S+RCD+ELKL+VARKMK+EA FYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 545  RSAEKENSERHSQRCDVELKLAVARKMKEEAGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 604

Query: 1070 RGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLE 1249
            RG+LEF+EGRPLG  GL WLKIHLANLYG GVDKLS+DGR+AF E+++++IF+SA +PLE
Sbjct: 605  RGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYDGRIAFTENHLDDIFDSANRPLE 664

Query: 1250 GKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLG 1429
            GKRWWL+AEDP Q LA CMDL++A++  S E+ I HIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 665  GKRWWLEAEDPFQCLAVCMDLNEALRSPSPETVISHIPVHQDGSCNGLQHYAALGRDKLG 724

Query: 1430 AEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTV 1609
            A AVNL   EKPAD+YSG+AARV  I++RDA  D A   +A  A++L+ Q++RKLVKQTV
Sbjct: 725  AVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKDADAARARLLVDQVDRKLVKQTV 784

Query: 1610 MTSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            MTSVYGVTY+GAREQI++RLKERG   D +E
Sbjct: 785  MTSVYGVTYVGAREQIKRRLKERGVIADDSE 815


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Brachypodium
            distachyon]
          Length = 992

 Score =  720 bits (1859), Expect = 0.0
 Identities = 354/570 (62%), Positives = 438/570 (76%), Gaps = 3/570 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+HKFLE T         
Sbjct: 234  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKNTKEVD 292

Query: 182  XXX-ADTSNLNDEY--LQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                A  S++  E   L++K+T L+K+ K R VR+I+ K D +  W    HAKVGS L++
Sbjct: 293  NVVEAGDSDIAKEQQRLRKKVTDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIE 352

Query: 353  MLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERM 532
            +LI+TA+IQPP  QS    P+IRPAF H  +T   E +K ++R GVI+CDPL++QGL+R 
Sbjct: 353  LLIETAHIQPPVSQSADSTPDIRPAFTHEMRTVTREQQKSSRRYGVIKCDPLIRQGLDRT 412

Query: 533  ARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQA 712
            A+HMV PY PMLI P +W GY+KG +LFLPS+VMR HG+R+QREA+K  PK QMQ +++A
Sbjct: 413  AKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQLIFEA 472

Query: 713  LDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTW 892
            LD LGSTKWRIN+K+L +V+ IW+ GG   D++ R DV LPEKP  EDE E+KKW+    
Sbjct: 473  LDTLGSTKWRINKKVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDETELKKWRWNLR 532

Query: 893  EAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1072
              +++N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 533  SVKKENSERHSQRCDVELKLAVARKMKDEVGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 592

Query: 1073 GILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEG 1252
            G+LEF+EGRPLG  GL WLKIHLANLY  GVDKLS+DGR+AF E+++ +IF+SA +PLEG
Sbjct: 593  GVLEFSEGRPLGDSGLCWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSANRPLEG 652

Query: 1253 KRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGA 1432
            KRWWL AEDP Q LA CMDL +A++ SS E+ I HIPVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 653  KRWWLGAEDPFQCLAVCMDLTEALRSSSPEAMISHIPVHQDGSCNGLQHYAALGRDKLGA 712

Query: 1433 EAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVM 1612
             AVNL   EKPAD+YSG+A RV  I+RRDA  D A   +A  A++L+ Q++RKLVKQTVM
Sbjct: 713  IAVNLVSGEKPADVYSGIATRVVEIMRRDAQKDPALDPDAARARLLVDQVDRKLVKQTVM 772

Query: 1613 TSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            TSVYGVTY+GAREQI++RLKERG   D +E
Sbjct: 773  TSVYGVTYVGAREQIKRRLKERGVIGDDSE 802


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  718 bits (1853), Expect = 0.0
 Identities = 348/568 (61%), Positives = 435/568 (76%), Gaps = 1/568 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMM+VITMHK+  LLMTG +   +  V+ AA  +GEA+EQEVR+HKFLE T         
Sbjct: 268  DMMSVITMHKLMGLLMTGGEHG-TCRVVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQ 326

Query: 182  XXX-ADTSNLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDML 358
                +D +    E L +K+T L+K+ K + VR I+SK D S SW     AKVGS L+++L
Sbjct: 327  ENGESDAAKKEREKLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELL 386

Query: 359  IQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMAR 538
             QTA+IQPP DQ    PP+IRPAF H F+T   + +  ++R GVIECDPLV +GLE+ AR
Sbjct: 387  TQTAFIQPPADQLADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTAR 446

Query: 539  HMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALD 718
            HMV PY PML+ P  W GY+KG Y FLPS+VMRIHG+R+QREA+K  P+ Q++ V++ALD
Sbjct: 447  HMVIPYMPMLVPPLNWTGYDKGGYFFLPSYVMRIHGARQQREAIKRTPREQLEPVFKALD 506

Query: 719  FLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTWEA 898
             LG+T+WR+N+++L VV+ IWA GG   D++ R DVPLPE+P  EDE  +KKWK +    
Sbjct: 507  ALGNTRWRVNKRVLSVVDRIWASGGHLADLVDRNDVPLPEEPDTEDETLLKKWKWKVKSV 566

Query: 899  ERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGI 1078
            +++NM  +S+RCD ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSD+CRGI
Sbjct: 567  KKENMERHSQRCDTELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGI 626

Query: 1079 LEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEGKR 1258
            LEF EGRPLG+ GLSWLKIHLANLY  GVDKLS +GR+AF E+++++IF+S +KPLEG+R
Sbjct: 627  LEFQEGRPLGKSGLSWLKIHLANLYAGGVDKLSLEGRIAFTENHLDDIFDSVDKPLEGRR 686

Query: 1259 WWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGAEA 1438
            WWLKAEDP Q LA C++L +A++ SS E+FI HIPVHQDGSCNGLQHYAALGRDKLGA +
Sbjct: 687  WWLKAEDPFQCLAVCINLAEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKLGAAS 746

Query: 1439 VNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVMTS 1618
            VNL   EKPAD+YSG+A RV  I+RRDA  D   F  A  AK+L+ Q++RKLVKQTVMTS
Sbjct: 747  VNLVTGEKPADVYSGIAVRVLEIMRRDAQKDPVVFPEALRAKLLINQVDRKLVKQTVMTS 806

Query: 1619 VYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            VYGVTYIGAR+QI++RLKERG+  D  E
Sbjct: 807  VYGVTYIGARDQIKRRLKERGSISDDAE 834


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X2 [Oryza brachyantha]
          Length = 839

 Score =  715 bits (1846), Expect = 0.0
 Identities = 351/571 (61%), Positives = 438/571 (76%), Gaps = 4/571 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+HKFLE           
Sbjct: 81   DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMD 139

Query: 182  XXX----ADTSNLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALL 349
                   +D +    E L++K+T L+K+ K R VR I+ K D S  W    HAKVGS L+
Sbjct: 140  NEEEVGCSDIAK-EQERLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLI 198

Query: 350  DMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLER 529
            +++I+TAYIQPP  QS   PP+IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R
Sbjct: 199  ELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDR 258

Query: 530  MARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQ 709
             A+HMV PY PMLI P +W GY+KG +LFLPS+VMR HG+R+QREA+K  P+ QMQ V++
Sbjct: 259  TAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFE 318

Query: 710  ALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQT 889
            ALD LGSTKWR+N+++L +V+ IW+ GG   D++ R DV LPEKP  EDE ++KKW+   
Sbjct: 319  ALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNL 378

Query: 890  WEAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1069
              A+++N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 379  KAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 438

Query: 1070 RGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLE 1249
            RG+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+DGR+AF E+++ +IF+SA++PLE
Sbjct: 439  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLE 498

Query: 1250 GKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLG 1429
            GKRWWL AEDP Q LA C++L +A++  S E+ I HIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 499  GKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLG 558

Query: 1430 AEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTV 1609
            A AVNL   EKPAD+Y+G+A RV  I+R DAL D AT  +A  A+ML+ Q++RKLVKQTV
Sbjct: 559  AIAVNLVAGEKPADVYTGIATRVLEIMRNDALKDPATDPDAARARMLVDQVDRKLVKQTV 618

Query: 1610 MTSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            MTSVYGVTY+GAREQI++RLKER    D +E
Sbjct: 619  MTSVYGVTYVGAREQIKRRLKERDMIGDDSE 649


>ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X1 [Oryza brachyantha]
          Length = 703

 Score =  715 bits (1846), Expect = 0.0
 Identities = 351/571 (61%), Positives = 438/571 (76%), Gaps = 4/571 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+HKFLE           
Sbjct: 54   DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMD 112

Query: 182  XXX----ADTSNLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALL 349
                   +D +    E L++K+T L+K+ K R VR I+ K D S  W    HAKVGS L+
Sbjct: 113  NEEEVGCSDIAK-EQERLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLI 171

Query: 350  DMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLER 529
            +++I+TAYIQPP  QS   PP+IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R
Sbjct: 172  ELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDR 231

Query: 530  MARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQ 709
             A+HMV PY PMLI P +W GY+KG +LFLPS+VMR HG+R+QREA+K  P+ QMQ V++
Sbjct: 232  TAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFE 291

Query: 710  ALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQT 889
            ALD LGSTKWR+N+++L +V+ IW+ GG   D++ R DV LPEKP  EDE ++KKW+   
Sbjct: 292  ALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNL 351

Query: 890  WEAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1069
              A+++N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 352  KAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 411

Query: 1070 RGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLE 1249
            RG+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+DGR+AF E+++ +IF+SA++PLE
Sbjct: 412  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLE 471

Query: 1250 GKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLG 1429
            GKRWWL AEDP Q LA C++L +A++  S E+ I HIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 472  GKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLG 531

Query: 1430 AEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTV 1609
            A AVNL   EKPAD+Y+G+A RV  I+R DAL D AT  +A  A+ML+ Q++RKLVKQTV
Sbjct: 532  AIAVNLVAGEKPADVYTGIATRVLEIMRNDALKDPATDPDAARARMLVDQVDRKLVKQTV 591

Query: 1610 MTSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            MTSVYGVTY+GAREQI++RLKER    D +E
Sbjct: 592  MTSVYGVTYVGAREQIKRRLKERDMIGDDSE 622


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score =  713 bits (1841), Expect = 0.0
 Identities = 348/570 (61%), Positives = 437/570 (76%), Gaps = 3/570 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEAVE EVR+HKFLE T         
Sbjct: 106  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVD 164

Query: 182  XXXADTSN---LNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                   +      + L++K+T L+K+ K R VR ++ K D +  W    HAKVGS L++
Sbjct: 165  KVVEPGDSDIAKEQQLLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIE 224

Query: 353  MLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERM 532
            + I+TA+IQPP  QS    PEIRPAF H  +T   E  ++++R GVI+CDPLV+QGL+R 
Sbjct: 225  LFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVARE--QKSRRYGVIKCDPLVRQGLDRT 282

Query: 533  ARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQA 712
            A+HMV PY PMLI P  W GY+KG +LFLPS+VMR HG+R+QREA+K  PK QMQ +++A
Sbjct: 283  AKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEA 342

Query: 713  LDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTW 892
            LD LGSTKWR+N+++L +V+ IW+ GG   D++ R DV LPEKP  EDE E+KKW+    
Sbjct: 343  LDNLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRADVSLPEKPDTEDEAELKKWRWSMR 402

Query: 893  EAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1072
             A+++N   +S+RCD+ELKL+VARKMK+E  FY+PHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 403  SAKKENSERHSQRCDVELKLAVARKMKEEVGFYHPHNLDFRGRAYPMHPYLNHLGSDLCR 462

Query: 1073 GILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEG 1252
            G+LEF+EGRPLG  GL WLKIHLANLYG GVDKLS+DGR+AF E+++ +IF+SA +PLEG
Sbjct: 463  GVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYDGRIAFTENHLEDIFDSANRPLEG 522

Query: 1253 KRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGA 1432
            KRWWL+AEDP Q LA CMDL++A++ SS E+ I HIPVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 523  KRWWLEAEDPFQCLAVCMDLNEALRSSSPETVISHIPVHQDGSCNGLQHYAALGRDKLGA 582

Query: 1433 EAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVM 1612
             AVNL   EKPAD+YSG+AARV  I++RDA  D A   +A  A++L+ Q++R+LVKQTVM
Sbjct: 583  VAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKDADAARARLLVDQVDRRLVKQTVM 642

Query: 1613 TSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            TSVYGVTY+GAREQI++RLKERG   D +E
Sbjct: 643  TSVYGVTYVGAREQIKRRLKERGVIADDSE 672


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
            gi|48716846|dbj|BAD23544.1| putative phage-type RNA
            polymerase [Oryza sativa Japonica Group]
            gi|215694941|dbj|BAG90132.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 951

 Score =  712 bits (1839), Expect = 0.0
 Identities = 347/570 (60%), Positives = 438/570 (76%), Gaps = 3/570 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+HKFLE T         
Sbjct: 259  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMD 317

Query: 182  XXXADTSN---LNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                   +      E L++K+T L+K+ K R VR+I+ K D S  W    HAKVGS L++
Sbjct: 318  NEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIE 377

Query: 353  MLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERM 532
            ++I+TAYIQPP  QS   PP+IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R 
Sbjct: 378  LMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRT 437

Query: 533  ARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQA 712
            A+HMV PY PMLI P +W GY+KG +LFLPS+VMR HG+R+QR+A++  P+ QMQ V++A
Sbjct: 438  AKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEA 497

Query: 713  LDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTW 892
            L+ LGSTKWR+N+++L +V+ IW+ GG   D++ R DV LPEKP  EDE ++KKW+    
Sbjct: 498  LNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLR 557

Query: 893  EAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1072
             A+++N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 558  AAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 617

Query: 1073 GILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEG 1252
            G+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+DGR+AF E+++ +IF+SA++PLEG
Sbjct: 618  GVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEG 677

Query: 1253 KRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGA 1432
            KRWWL AEDP Q LA C++L +A++  S E+ I HIPVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 678  KRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGA 737

Query: 1433 EAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVM 1612
             AVNL   EKPAD+Y+G+A RV  I++ DAL D AT  +A  A++LL Q++RKLVKQTVM
Sbjct: 738  IAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVM 797

Query: 1613 TSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            TSVYGVTY+GAREQI++RLKER    D +E
Sbjct: 798  TSVYGVTYVGAREQIKRRLKERDMICDDSE 827


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase [Oryza sativa Japonica
            Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
            sativa Japonica Group]
          Length = 1017

 Score =  712 bits (1839), Expect = 0.0
 Identities = 347/570 (60%), Positives = 438/570 (76%), Gaps = 3/570 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+HKFLE T         
Sbjct: 259  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMD 317

Query: 182  XXXADTSN---LNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                   +      E L++K+T L+K+ K R VR+I+ K D S  W    HAKVGS L++
Sbjct: 318  NEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIE 377

Query: 353  MLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERM 532
            ++I+TAYIQPP  QS   PP+IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R 
Sbjct: 378  LMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRT 437

Query: 533  ARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQA 712
            A+HMV PY PMLI P +W GY+KG +LFLPS+VMR HG+R+QR+A++  P+ QMQ V++A
Sbjct: 438  AKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEA 497

Query: 713  LDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTW 892
            L+ LGSTKWR+N+++L +V+ IW+ GG   D++ R DV LPEKP  EDE ++KKW+    
Sbjct: 498  LNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLR 557

Query: 893  EAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1072
             A+++N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 558  AAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 617

Query: 1073 GILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEG 1252
            G+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+DGR+AF E+++ +IF+SA++PLEG
Sbjct: 618  GVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEG 677

Query: 1253 KRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGA 1432
            KRWWL AEDP Q LA C++L +A++  S E+ I HIPVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 678  KRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGA 737

Query: 1433 EAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVM 1612
             AVNL   EKPAD+Y+G+A RV  I++ DAL D AT  +A  A++LL Q++RKLVKQTVM
Sbjct: 738  IAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVM 797

Query: 1613 TSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            TSVYGVTY+GAREQI++RLKER    D +E
Sbjct: 798  TSVYGVTYVGAREQIKRRLKERDMICDDSE 827


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  712 bits (1839), Expect = 0.0
 Identities = 347/570 (60%), Positives = 438/570 (76%), Gaps = 3/570 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+HKFLE T         
Sbjct: 225  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMD 283

Query: 182  XXXADTSN---LNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                   +      E L++K+T L+K+ K R VR+I+ K D S  W    HAKVGS L++
Sbjct: 284  NEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIE 343

Query: 353  MLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERM 532
            ++I+TAYIQPP  QS   PP+IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R 
Sbjct: 344  LMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRT 403

Query: 533  ARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQA 712
            A+HMV PY PMLI P +W GY+KG +LFLPS+VMR HG+R+QR+A++  P+ QMQ V++A
Sbjct: 404  AKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEA 463

Query: 713  LDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTW 892
            L+ LGSTKWR+N+++L +V+ IW+ GG   D++ R DV LPEKP  EDE ++KKW+    
Sbjct: 464  LNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLR 523

Query: 893  EAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1072
             A+++N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 524  AAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 583

Query: 1073 GILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEG 1252
            G+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+DGR+AF E+++ +IF+SA++PLEG
Sbjct: 584  GVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEG 643

Query: 1253 KRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGA 1432
            KRWWL AEDP Q LA C++L +A++  S E+ I HIPVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 644  KRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGA 703

Query: 1433 EAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVM 1612
             AVNL   EKPAD+Y+G+A RV  I++ DAL D AT  +A  A++LL Q++RKLVKQTVM
Sbjct: 704  IAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVM 763

Query: 1613 TSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            TSVYGVTY+GAREQI++RLKER    D +E
Sbjct: 764  TSVYGVTYVGAREQIKRRLKERDMICDDSE 793


>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
            gi|548861119|gb|ERN18503.1| hypothetical protein
            AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score =  711 bits (1834), Expect = 0.0
 Identities = 347/568 (61%), Positives = 438/568 (77%), Gaps = 1/568 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            D MAVI MHK+  L+MTG+D   SV V+QAA ++GEAVE E R+H FLE T         
Sbjct: 231  DKMAVIVMHKLMGLMMTGQDCG-SVRVVQAACQIGEAVEHEARIHDFLEKTKKKSRRGKK 289

Query: 182  XXXADTS-NLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDML 358
                  S +   E L++++T L+K  K R VR ++ + D    W    HAK+GS L+++ 
Sbjct: 290  VGEESESLSKEQENLRKRVTNLMKMQKLREVRKLVRQGDDVKPWGQDAHAKLGSRLIELF 349

Query: 359  IQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMAR 538
            I+TAYIQPP DQ  + PPEIRPAF+H F+T   + +K  +R GVIECDPLV +GL++ AR
Sbjct: 350  IKTAYIQPPVDQQAEGPPEIRPAFRHTFRTFTKDRQKFCRRYGVIECDPLVHKGLDKTAR 409

Query: 539  HMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALD 718
            HMVT YTPMLI+P  W+GY+KG YL LPS +MRIHG+++QREA+KNVP+ Q+Q V++ALD
Sbjct: 410  HMVTAYTPMLIRPKPWRGYDKGGYLVLPSQIMRIHGAKQQREAVKNVPQKQLQNVFEALD 469

Query: 719  FLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTWEA 898
             LGSTKWR+N++IL VV  +WA GGG   ++ R+DV LPEKP  EDE+EI+KW+    +A
Sbjct: 470  TLGSTKWRVNKRILDVVNRVWARGGGIAGLVDREDVLLPEKPDTEDEMEIRKWRWSVKKA 529

Query: 899  ERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGI 1078
            ++ N   +S+RCDLELKLSVARKM++E  FYYPHNLDFRGRAYPMHP+LNHLGSDLCRGI
Sbjct: 530  KKVNSERHSQRCDLELKLSVARKMREEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGI 589

Query: 1079 LEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEGKR 1258
            LEFAEGRPLG+ GL W KIHLANLY  GVDKLS+DGR+AFVE+++++IF+SAE+PLEGKR
Sbjct: 590  LEFAEGRPLGKSGLRWSKIHLANLYACGVDKLSYDGRLAFVENHLDDIFDSAERPLEGKR 649

Query: 1259 WWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGAEA 1438
            WWL AEDP Q LAACM+L +A+K  + E+ I H+PVHQDGSCNGLQHYAALGRD+LGA A
Sbjct: 650  WWLNAEDPFQCLAACMNLFEALKSPTPENVISHMPVHQDGSCNGLQHYAALGRDRLGAAA 709

Query: 1439 VNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVMTS 1618
            VNL   EKPAD+YSG+AARV  I++RD+    A+  NA  A+ L+ Q++RKLVKQTVMTS
Sbjct: 710  VNLVAGEKPADVYSGIAARVLEIMKRDSEKGPASNPNAFLARALVDQVDRKLVKQTVMTS 769

Query: 1619 VYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            VYGVTYIGAR+QI +RLKERG   D ++
Sbjct: 770  VYGVTYIGARDQICRRLKERGHITDDSQ 797


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  708 bits (1828), Expect = 0.0
 Identities = 350/571 (61%), Positives = 434/571 (76%), Gaps = 4/571 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMM+VITMHK+  LLMTG +   S  V+QAA  +G+A+EQEVR+H FLE T         
Sbjct: 276  DMMSVITMHKLVGLLMTGGEHG-STRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDK 334

Query: 182  XXXA---DTSNLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                   D      E L++K+T L+K+ K    R I+   D S  W     AKVGS L++
Sbjct: 335  NVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIE 394

Query: 353  MLIQTAYIQPPTDQSLQD-PPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLER 529
            +L+QTAYIQPP D  L D PP+IRPAF H FKT M E +K  +R GVIECDPLVK+GLER
Sbjct: 395  LLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLER 454

Query: 530  MARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQ 709
             ARHMV PY PML+ P  W GY+KG +LFLPS+VMR HG+R+QREA+K  P+NQ++ V++
Sbjct: 455  TARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFE 514

Query: 710  ALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQT 889
            AL+ LG+TKWRIN+++  VV+ IWA GG   D++ R DVPLPEKP  EDE +++KWK + 
Sbjct: 515  ALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKV 574

Query: 890  WEAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1069
               ++ N   +S+RCD+ELKL+VARKMKDE  F+YPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 575  KSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLC 634

Query: 1070 RGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLE 1249
            RGILEFAEGRPLG  GL WLKIHLANL+  GVDKLS +GR+ F E+++++IF+SA++PLE
Sbjct: 635  RGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLE 694

Query: 1250 GKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLG 1429
            GKRWWL AEDP QFLAAC++L +A++ SS E+ I HIPVHQDGSCNGLQHYAALGRD+LG
Sbjct: 695  GKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLG 754

Query: 1430 AEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTV 1609
            A AVNL   EKPAD+YSG+AARV  I++RDA  D A F +A  A++L+ Q++RKLVKQTV
Sbjct: 755  ATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTV 814

Query: 1610 MTSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            MTSVYGVTYIGAR+QI++RLKER A  D  E
Sbjct: 815  MTSVYGVTYIGARDQIKRRLKERNAIADDVE 845


>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
          Length = 975

 Score =  707 bits (1826), Expect = 0.0
 Identities = 346/570 (60%), Positives = 439/570 (77%), Gaps = 3/570 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+++FLE T         
Sbjct: 217  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEME 275

Query: 182  XXX--ADTS-NLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                  DT+  +  + L++K+T L+K+ K R VR+I+   DKS  W    HAKVGS L+D
Sbjct: 276  NEEEAGDTNIAIEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLID 335

Query: 353  MLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERM 532
            + I TA+IQPP  QS    P+IRPAF+H  +T + E +K ++R GVI+CDPLV+QGL+R 
Sbjct: 336  LFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRT 395

Query: 533  ARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQA 712
            A+HMV PY PMLI P  W GY+KG +LFLPS+VMR HG+R+QR+A+K  P+ QMQ V++A
Sbjct: 396  AKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEA 455

Query: 713  LDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTW 892
            L+ LGSTKWR+N+++L +V+ IW+ GG   D++ R DVP+PEKP  EDE  +K WK    
Sbjct: 456  LNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETLLKNWKWHLR 515

Query: 893  EAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1072
             A++KN   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 516  AAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 575

Query: 1073 GILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEG 1252
            G+LEFAEGRPLG+ GL WLKIHLANLY +GVDKLS+DGR+AF E+++  IF+SA++PLEG
Sbjct: 576  GVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYDGRIAFAENHLEEIFDSADRPLEG 635

Query: 1253 KRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGA 1432
            +RWWL AEDP Q LA CM+L +A++ SS E+ I HIPVHQDGSCNGLQHYAALG+DKLGA
Sbjct: 636  RRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGA 695

Query: 1433 EAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVM 1612
             AVNL   EKPAD+Y+G+A RV  I+R DA  D +   +A  A++++ Q++RKLVKQTVM
Sbjct: 696  IAVNLVAGEKPADVYTGIANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVM 755

Query: 1613 TSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            TSVYGVTYIGAREQIR+RLKERG  P+ +E
Sbjct: 756  TSVYGVTYIGAREQIRRRLKERGVIPNDSE 785


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score =  707 bits (1825), Expect = 0.0
 Identities = 342/568 (60%), Positives = 437/568 (76%), Gaps = 1/568 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG+    S  V+QAA  +GEA+E EVR+ +F+E T         
Sbjct: 54   DMMAVITMHKLMGLLMTGEGNG-SARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNN 112

Query: 182  XXXADTSNLND-EYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDML 358
                      + E L++K++ L+K+ K + VR I+ + D S  W    + KVGS L+++L
Sbjct: 113  PDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELL 172

Query: 359  IQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMAR 538
            I+TAYIQPP DQ    PP+IRPAF H  KT + E +K T+R GVIECDPLV++GLE+ AR
Sbjct: 173  IETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTAR 232

Query: 539  HMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALD 718
            HMV PY PML+ P  W GY+KG YLFLPS+VMRIHG+R+QREA+K  P+  ++  ++AL+
Sbjct: 233  HMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALN 292

Query: 719  FLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTWEA 898
             LG+TKWRIN+++L V++ IWA GG   D++ R+DVPLPE+P  EDE EI+KWK +    
Sbjct: 293  TLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSV 352

Query: 899  ERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGI 1078
            +++N   +S+RCD+ELKL+VARKMKDE  F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGI
Sbjct: 353  KKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGI 412

Query: 1079 LEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEGKR 1258
            LEFAEGRPLG+ GL WLKIHLAN+Y  GVDKLS++GR+AF E+++ +IF+SA++PLEG+R
Sbjct: 413  LEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRR 472

Query: 1259 WWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGAEA 1438
            WWL AEDP Q LA C++L +A++ SS E+ I H+PVHQDGSCNGLQHYAALGRDKLGA A
Sbjct: 473  WWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAA 532

Query: 1439 VNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVMTS 1618
            VNL   EKPAD+YSG+AARV  I++RDA  D AT  NA  A++L+ Q++RKLVKQTVMTS
Sbjct: 533  VNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTS 592

Query: 1619 VYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            VYGVTYIGAR+QI++RLKER A  D+ E
Sbjct: 593  VYGVTYIGARDQIKRRLKERCAIADEGE 620


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  707 bits (1825), Expect = 0.0
 Identities = 342/568 (60%), Positives = 437/568 (76%), Gaps = 1/568 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG+    S  V+QAA  +GEA+E EVR+ +F+E T         
Sbjct: 222  DMMAVITMHKLMGLLMTGEGNG-SARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNN 280

Query: 182  XXXADTSNLND-EYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDML 358
                      + E L++K++ L+K+ K + VR I+ + D S  W    + KVGS L+++L
Sbjct: 281  PDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELL 340

Query: 359  IQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMAR 538
            I+TAYIQPP DQ    PP+IRPAF H  KT + E +K T+R GVIECDPLV++GLE+ AR
Sbjct: 341  IETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTAR 400

Query: 539  HMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALD 718
            HMV PY PML+ P  W GY+KG YLFLPS+VMRIHG+R+QREA+K  P+  ++  ++AL+
Sbjct: 401  HMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALN 460

Query: 719  FLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTWEA 898
             LG+TKWRIN+++L V++ IWA GG   D++ R+DVPLPE+P  EDE EI+KWK +    
Sbjct: 461  TLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSV 520

Query: 899  ERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGI 1078
            +++N   +S+RCD+ELKL+VARKMKDE  F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGI
Sbjct: 521  KKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGI 580

Query: 1079 LEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEGKR 1258
            LEFAEGRPLG+ GL WLKIHLAN+Y  GVDKLS++GR+AF E+++ +IF+SA++PLEG+R
Sbjct: 581  LEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRR 640

Query: 1259 WWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGAEA 1438
            WWL AEDP Q LA C++L +A++ SS E+ I H+PVHQDGSCNGLQHYAALGRDKLGA A
Sbjct: 641  WWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAA 700

Query: 1439 VNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVMTS 1618
            VNL   EKPAD+YSG+AARV  I++RDA  D AT  NA  A++L+ Q++RKLVKQTVMTS
Sbjct: 701  VNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTS 760

Query: 1619 VYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            VYGVTYIGAR+QI++RLKER A  D+ E
Sbjct: 761  VYGVTYIGARDQIKRRLKERCAIADEGE 788


>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
            gi|548846502|gb|ERN05778.1| hypothetical protein
            AMTR_s00006p00254180 [Amborella trichopoda]
          Length = 1006

 Score =  706 bits (1821), Expect = 0.0
 Identities = 341/569 (59%), Positives = 438/569 (76%), Gaps = 2/569 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMM+VITMHK+  LLMTG D   S  ++QAA ++GEA+EQEV++H+F E T         
Sbjct: 249  DMMSVITMHKLMGLLMTGTDNG-STRLVQAACQIGEAIEQEVKIHRFFEKTKKKSDKEKK 307

Query: 182  XXXADTS--NLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDM 355
                + +  +   E L++++T L+K+ K   VR I+   D +  W    HAKVGS L+++
Sbjct: 308  LDGEEPNEGDKEKESLRKRVTNLMKKQKLHQVRKIVKGQDDAKPWGIDIHAKVGSRLIEL 367

Query: 356  LIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMA 535
            LI+TAY+QPP DQS + PP+IRPAF+HI KT     +K  +R GVIECDPL+ +GLE+ A
Sbjct: 368  LIETAYVQPPVDQSAEGPPDIRPAFRHILKTVTKNDQKIRRRYGVIECDPLICKGLEKTA 427

Query: 536  RHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQAL 715
            RHMV PY PML+ P  W GY++G +LFLPS+VMRIHG+R+QR A+K+ P+ Q+ KVY+AL
Sbjct: 428  RHMVIPYMPMLVPPVKWTGYDRGGHLFLPSYVMRIHGARQQRYAIKHAPRKQLLKVYEAL 487

Query: 716  DFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTWE 895
            D LG+TKWR+N+++L V++ IWA+GG   D++ R+DV +PEKP  EDE +I++WK     
Sbjct: 488  DTLGTTKWRVNKRVLGVIDRIWADGGRLADLVDREDVAIPEKPDTEDEAKIREWKWLVKG 547

Query: 896  AERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG 1075
            A +KN  L+S+RCD ELKL+VAR+MKDE  F+YPHNLDFRGRAYPMHPYLNHLGSDLCRG
Sbjct: 548  ARKKNSELHSQRCDTELKLNVARRMKDEEGFHYPHNLDFRGRAYPMHPYLNHLGSDLCRG 607

Query: 1076 ILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEGK 1255
            ILEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+DGR+ FVE+++ +IF+SA++PLEG 
Sbjct: 608  ILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLEFVENHLEDIFDSADRPLEGG 667

Query: 1256 RWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGAE 1435
            RWWL AEDP Q LAAC++L +A++ SS ++ I H+PVHQDGSCNGLQHYAALGRDKLGA 
Sbjct: 668  RWWLGAEDPFQCLAACVNLSEALRSSSPDTTISHMPVHQDGSCNGLQHYAALGRDKLGAI 727

Query: 1436 AVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVMT 1615
            AVNL   EKPAD+YSG+A RV  I+RRD+  D  +  N   AK+LL Q++RKLVKQTVMT
Sbjct: 728  AVNLVAGEKPADVYSGIAERVLDIMRRDSQKDPTSDPNVARAKLLLNQVDRKLVKQTVMT 787

Query: 1616 SVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            SVYGVTY+GAR+QI +RLKERGA  D+ E
Sbjct: 788  SVYGVTYVGARDQIMRRLKERGAITDEKE 816


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Setaria italica]
          Length = 1005

 Score =  704 bits (1818), Expect = 0.0
 Identities = 345/570 (60%), Positives = 432/570 (75%), Gaps = 3/570 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+H+FLE T         
Sbjct: 247  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRIHRFLEKTRKKSNKEKE 305

Query: 182  XXXA--DTSNLNDEY-LQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                  D+    ++  L++K+T L+K+ K R VR I+   D S  W    HAKVGS L++
Sbjct: 306  NEEEIFDSDIAKEQQRLRKKVTDLMKKQKLRQVRKIVKNQDDSRPWGQDAHAKVGSRLIE 365

Query: 353  MLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERM 532
            + I+TA+IQPP  QS    P+IRPAF+H  +T   E +K ++R GVI+CDPLV+QGL+R 
Sbjct: 366  LFIETAHIQPPASQSSDGLPDIRPAFRHEMRTVPKEQQKHSRRYGVIKCDPLVRQGLDRT 425

Query: 533  ARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQA 712
            A+HMV PY PMLI P  W GY+KG +LFLPS+VMR HG+R+QREA+K  P+ QMQ V++A
Sbjct: 426  AKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEA 485

Query: 713  LDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTW 892
            L+ LGSTKWR+N+++L +++ IW+ GG   D++ R DVPLPEKP  EDE  +KKW+  T 
Sbjct: 486  LNTLGSTKWRVNKRVLSIIDRIWSSGGRLADLVDRTDVPLPEKPDTEDETVLKKWRWHTR 545

Query: 893  EAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1072
              ++ N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 546  SVKKGNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 605

Query: 1073 GILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEG 1252
            G+LEFAEGRPLG  GL WLKIHLANLY  GVDKLS+ GR+AF E+++  IF+SA++PLEG
Sbjct: 606  GVLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYAGRIAFAENHLEEIFDSADRPLEG 665

Query: 1253 KRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGA 1432
            KRWWL AEDP Q LA CM+L +A++  S E+ I HIPVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 666  KRWWLGAEDPFQCLAVCMNLTEALRSPSPEATISHIPVHQDGSCNGLQHYAALGRDKLGA 725

Query: 1433 EAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVM 1612
             AVNL   EKPAD+YSG+A RV  I+RRD+  D +T  +A  A+++L Q++RKLVKQTVM
Sbjct: 726  IAVNLVAGEKPADVYSGIATRVVEIMRRDSQKDPSTDPDAARARLILDQVDRKLVKQTVM 785

Query: 1613 TSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            TSVYGVTY+GAREQI++RLKERG   D  E
Sbjct: 786  TSVYGVTYVGAREQIKRRLKERGVIADDAE 815


>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
            gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
            polymerase [Zea mays]
          Length = 975

 Score =  702 bits (1811), Expect = 0.0
 Identities = 345/570 (60%), Positives = 438/570 (76%), Gaps = 3/570 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+++FLE T         
Sbjct: 217  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEME 275

Query: 182  XXX--ADTS-NLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLD 352
                  DT+  +  + L++K+T L+K+ K R VR+I+   DKS  W    HAKVGS L+D
Sbjct: 276  NEEEAGDTNIAVEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLID 335

Query: 353  MLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERM 532
            + I TA+IQPP  QS    P+IRPAF+H  +T + E +K ++R GVI+CDPLV+QGL+R 
Sbjct: 336  LFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRT 395

Query: 533  ARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQA 712
            A+HMV PY PMLI P  W GY+KG +LFLPS+VMR HG+R+QR+A+K  P+ QMQ V++A
Sbjct: 396  AKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEA 455

Query: 713  LDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTW 892
            L+ LGSTKWR+N+++L +V+ IW+ GG   D++ R DVP+PEKP  EDE  +K WK    
Sbjct: 456  LNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETLLKNWKWHLR 515

Query: 893  EAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1072
             A++KN   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 516  AAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 575

Query: 1073 GILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEG 1252
            G+LEFAEGRPLG+ GL WLKIHLANLY +GVDKLS+DGR+AF E+++  IF+SA++PLEG
Sbjct: 576  GVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYDGRIAFAENHLEEIFDSADRPLEG 635

Query: 1253 KRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGA 1432
            +RW L AEDP Q LA CM+L +A++ SS E+ I HIPVHQDGSCNGLQHYAALG+DKLGA
Sbjct: 636  RRWRLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGA 695

Query: 1433 EAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVM 1612
             AVNL   EKPAD+Y+G+A RV  I+R DA  D +   +A  A++++ Q++RKLVKQTVM
Sbjct: 696  IAVNLVAGEKPADVYTGIANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVM 755

Query: 1613 TSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            TSVYGVTYIGAREQIR+RLKERG  P+ +E
Sbjct: 756  TSVYGVTYIGAREQIRRRLKERGVIPNDSE 785


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score =  699 bits (1805), Expect = 0.0
 Identities = 343/571 (60%), Positives = 432/571 (75%), Gaps = 4/571 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            DMMAVITMHK+  LLMTG   D SV V+QAA ++GEA+E EVR+++FLE T         
Sbjct: 217  DMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKSNKEME 275

Query: 182  XXX---ADTSNLNDEY-LQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALL 349
                   DT    ++  L++K+T L+K+ K R VR+I+   D S  W     AKVGS L+
Sbjct: 276  KEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRLI 335

Query: 350  DMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLER 529
            ++ + TA+IQPP  QS    P+IRPAF+H  +T   E +K ++R GVI+CDPLV+QGL+R
Sbjct: 336  ELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDR 395

Query: 530  MARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQ 709
             A+HMV PY PMLI P  W GY+KG +LFLPS+VMR HG+R+QREA+K  P+ QMQ V++
Sbjct: 396  TAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFE 455

Query: 710  ALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQT 889
            AL+ LGSTKWR+N+++L +V+ IW+ GG   D++ R DVPLPEKP  EDE  IK WK   
Sbjct: 456  ALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIKNWKWHL 515

Query: 890  WEAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1069
               +++N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 516  RSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 575

Query: 1070 RGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLE 1249
            RGILEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+DGR+AF E+++  IF+SA++PLE
Sbjct: 576  RGILEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRVAFTENHLEEIFDSADRPLE 635

Query: 1250 GKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLG 1429
            GKRWWL AEDP Q LA CM+L +A++ SS E+ I HIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 636  GKRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLG 695

Query: 1430 AEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTV 1609
            A AVNL   EKPAD+Y+G+A RV  I+R DA  D +   +   A++++ Q++RKLVKQTV
Sbjct: 696  AIAVNLVAGEKPADVYTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQVDRKLVKQTV 755

Query: 1610 MTSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            MTSVYGVTY+GAR+QI++RLKERG  PD+ E
Sbjct: 756  MTSVYGVTYVGARDQIKRRLKERGVIPDEAE 786


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score =  697 bits (1800), Expect = 0.0
 Identities = 338/567 (59%), Positives = 431/567 (76%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXX 181
            +MMAVITMHK+  LLMTG     S  V+QAA  +GEA+E E R+H+FLE T         
Sbjct: 240  EMMAVITMHKLMGLLMTGGGSG-SARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSL 298

Query: 182  XXXADTSNLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLI 361
               A       E L++K+  L+K+ K + VR I+ + D    W      KVG  L+ +LI
Sbjct: 299  EETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILI 358

Query: 362  QTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARH 541
            +TAYIQPP DQ    PP+IRPAF H  KT   E  K ++R GVI+CDPLV++GL++ ARH
Sbjct: 359  ETAYIQPPNDQLDDCPPDIRPAFMHTLKTV--ETVKGSRRYGVIQCDPLVRKGLDKTARH 416

Query: 542  MVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDF 721
            MV PY PML+ P  W GY++G YLFLPS++MR HG+++QREA+K VPK Q++ V+QALD 
Sbjct: 417  MVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDT 476

Query: 722  LGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTWEAE 901
            LG+TKWR+N+++L +++ IWA GG   D++ R+DVPLPE+P  EDE EIKKWK +   A+
Sbjct: 477  LGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAK 536

Query: 902  RKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 1081
            ++N   +S+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL
Sbjct: 537  KENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 596

Query: 1082 EFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEGKRW 1261
            EF+EGRPLG+ GL WLKIHLAN+YG GVDKLS++GR AF E+++ +IF+SA++PLEG+RW
Sbjct: 597  EFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRW 656

Query: 1262 WLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGAEAV 1441
            WL AEDP Q LA C+++ +A++  S E+ I H+P+HQDGSCNGLQHYAALGRDKLGA AV
Sbjct: 657  WLGAEDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAV 716

Query: 1442 NLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVMTSV 1621
            NL   +KPAD+YSG+AARV  I++RDA  D AT  N   A++L+ Q++RKLVKQTVMTSV
Sbjct: 717  NLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSV 776

Query: 1622 YGVTYIGAREQIRKRLKERGAFPDQNE 1702
            YGVTYIGAR+QI++RLKERGA  D NE
Sbjct: 777  YGVTYIGARDQIKRRLKERGAIEDDNE 803


>ref|XP_006602976.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
          Length = 1046

 Score =  697 bits (1799), Expect = 0.0
 Identities = 342/572 (59%), Positives = 431/572 (75%), Gaps = 5/572 (0%)
 Frame = +2

Query: 2    DMMAVITMHKVTTLLMTGKDKDC--SVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXX 175
            D MAVI MHK+  LLMTG ++    +  V+QAA  +G+A+E EVR+HKFLE T       
Sbjct: 285  DKMAVIAMHKLMGLLMTGNERVTIGTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDR 344

Query: 176  XXXXXADTSNLN---DEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSAL 346
                 A  S  +   ++ L++K+  L+K+ K   VR ++   D +  W  V   KVGS L
Sbjct: 345  SNKNKAGESVADIKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDDTKPWGAVIKTKVGSRL 404

Query: 347  LDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLE 526
            +++L+QTAYIQPP+DQ     P+IRPAF H FKT   E  K ++R G+I+CDPL+ +GLE
Sbjct: 405  IELLLQTAYIQPPSDQLPDAAPDIRPAFVHSFKTVTKESIKASRRYGIIQCDPLILKGLE 464

Query: 527  RMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVY 706
            R A++MV PY PML+ P  W GY+KG +LFLPS+VMR HG R+QREA+K  P+ Q++ V+
Sbjct: 465  RTAKNMVIPYMPMLVPPVNWTGYDKGGHLFLPSYVMRTHGVRQQREAVKRAPRKQLEPVF 524

Query: 707  QALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQ 886
            +ALD LG TKWR+N+K+L VV+ IWA GG   D++ R DVPLP++P  +DE +IKKWK +
Sbjct: 525  EALDTLGHTKWRVNKKVLSVVDRIWASGGRIADLVDRDDVPLPDEPDTDDEAKIKKWKWK 584

Query: 887  TWEAERKNMILYSRRCDLELKLSVARKMKDEAYFYYPHNLDFRGRAYPMHPYLNHLGSDL 1066
                +++N   YS+RCD+ELKL+VARKMKDE  FYYPHNLDFRGRAYPMHP+LNHLGSDL
Sbjct: 585  YKSLQKENRERYSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDL 644

Query: 1067 CRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPL 1246
            CRGILEFAEGR LG+ GL WLKIHLANLY  GVDKLS++GR+AF E++  +IF+SA+KPL
Sbjct: 645  CRGILEFAEGRSLGKSGLRWLKIHLANLYAGGVDKLSYEGRLAFTENHFEDIFDSADKPL 704

Query: 1247 EGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKL 1426
            EG+RWWLKAEDPLQ LA C+ L +A++ SS E+FI HIPVHQDGSCNGLQHYAALGRDKL
Sbjct: 705  EGRRWWLKAEDPLQCLAVCITLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKL 764

Query: 1427 GAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQT 1606
            GA AVNL   EKPAD+YSG+AARV  I++RDA  D A F +A  A+ L+ Q++RKLVKQT
Sbjct: 765  GAAAVNLVTGEKPADVYSGIAARVSNIMQRDAQKDPAVFRDALHARTLVNQVDRKLVKQT 824

Query: 1607 VMTSVYGVTYIGAREQIRKRLKERGAFPDQNE 1702
            VMTSVYGVTYIGAREQI++RLKER A  D  E
Sbjct: 825  VMTSVYGVTYIGAREQIKRRLKERNAISDDKE 856