BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00018710
         (1392 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE77866.1| unknown [Picea sitchensis]                             427   e-117
ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-lik...   377   e-102
gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [...   370   e-100
ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-lik...   366   1e-98
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like ...   364   4e-98
gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [...   364   5e-98
gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]      363   9e-98
ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   362   2e-97
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin...   358   2e-96
ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutr...   357   7e-96
ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Popu...   357   9e-96
ref|XP_006858556.1| hypothetical protein AMTR_s00071p00170380 [A...   355   2e-95
ref|XP_006471140.1| PREDICTED: tRNA pseudouridine synthase-like ...   354   4e-95
ref|XP_006305124.1| hypothetical protein CARUB_v10009493mg [Caps...   354   6e-95
ref|XP_003592926.1| tRNA pseudouridine synthase A [Medicago trun...   354   6e-95
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...   353   7e-95
ref|XP_002331109.1| predicted protein [Populus trichocarpa]           353   7e-95
gb|ESW20555.1| hypothetical protein PHAVU_006G218900g [Phaseolus...   353   1e-94
ref|NP_172451.2| pseudouridine synthase family protein [Arabidop...   352   2e-94
dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana] g...   352   2e-94

>gb|ADE77866.1| unknown [Picea sitchensis]
          Length = 382

 Score =  427 bits (1099), Expect = e-117
 Identities = 221/338 (65%), Positives = 252/338 (74%), Gaps = 4/338 (1%)
 Frame = +3

Query: 72   QKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEV 251
            QKQP   RTVQGVLEDAF KF+GQPVSS  SSRTD GVHAL NV HVD+ERISKR PGEV
Sbjct: 46   QKQPN-FRTVQGVLEDAFNKFIGQPVSSASSSRTDAGVHALTNVCHVDVERISKRKPGEV 104

Query: 252  LPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSV 431
            LPPHEP+VV++AVNHFLQK  GD+ I+DV+ VPM FHAR+RAQERTY+YRILSG++PLS+
Sbjct: 105  LPPHEPEVVKRAVNHFLQKDAGDISIIDVRFVPMTFHARYRAQERTYYYRILSGKEPLSI 164

Query: 432  FEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWP 611
            FEKD+AWHV EDL L  MQEAC++LVGHHDFSSFRA+GCQAKSPIK LDEL VCEMP WP
Sbjct: 165  FEKDRAWHVPEDLGLSCMQEACKVLVGHHDFSSFRASGCQAKSPIKILDELRVCEMPAWP 224

Query: 612  NFSPCM----TANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILC 779
             F   +      N SA   + VS   +E     D+   +E         F       +LC
Sbjct: 225  AFPMSIDRTSRVNISATSCKHVS---SEGKASFDNPVEMEGQVSLSKERFMNHGQPDMLC 281

Query: 780  QNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEK 959
            Q  NG+        FG ++GHRGYVVVARA+SFLYHQVRLLVGTLK VGTGK+S DDVE 
Sbjct: 282  QEENGNFGQDEVLEFGHRRGHRGYVVVARAQSFLYHQVRLLVGTLKCVGTGKLSVDDVES 341

Query: 960  ILKARTITSAPPMAPSCGLYLAEVKYDFRCDGTEKSND 1073
            ILKARTIT APPMAP+CGLYLA VKYDF C+   +  D
Sbjct: 342  ILKARTITVAPPMAPACGLYLAAVKYDFSCNDVNQMED 379


>ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-like isoform X1 [Cicer
            arietinum]
          Length = 374

 Score =  377 bits (967), Expect = e-102
 Identities = 200/332 (60%), Positives = 238/332 (71%), Gaps = 8/332 (2%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQKQ T  RTV GVLE+AF KFVGQPVS + SSRTD GVHAL NV HVD+ERISKR PGE
Sbjct: 71   SQKQLTD-RTVVGVLEEAFCKFVGQPVSVICSSRTDAGVHALSNVCHVDIERISKRKPGE 129

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            VLPPHEP VVR+AVNHFLQK  GDLM++DV+ VP DFHAR++AQERTYFYR+LSG +PLS
Sbjct: 130  VLPPHEPVVVRRAVNHFLQKQNGDLMVIDVRCVPSDFHARYKAQERTYFYRLLSGSEPLS 189

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
              EKD+AWHV E+L+LP MQEACR+LVGHHDFSSFRAAGCQAKSPI+TLDEL V E+   
Sbjct: 190  TLEKDRAWHVPEELNLPAMQEACRVLVGHHDFSSFRAAGCQAKSPIRTLDELSVVEVIQS 249

Query: 609  PNFSPCMTANASAAVERKVSI--------STTERIGDSDSSAVVERNRENFDATFTERDN 764
            P F   M        ER++ +        S  E +    SSA +++ R + +        
Sbjct: 250  PYFPSVMDR------ERQIKVADDLHGCGSNAEAVIPVSSSARIDKVRASNE-------- 295

Query: 765  GGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISC 944
                            G GFG+++ HR  VV ARAR+FLYHQVRLLVG LK+VGTG ++ 
Sbjct: 296  ----------------GVGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTI 339

Query: 945  DDVEKILKARTITSAPPMAPSCGLYLAEVKYD 1040
             DVE+IL A+T+T+A PMAP+CGLYL EVKYD
Sbjct: 340  PDVERILNAKTVTAASPMAPACGLYLGEVKYD 371


>gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 374

 Score =  370 bits (951), Expect = e-100
 Identities = 199/328 (60%), Positives = 235/328 (71%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQ+QP   RTV GVLE+AF KF+GQPVS   SSRTD GVHAL NV HVD+ERISKR PGE
Sbjct: 67   SQQQPNC-RTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGE 125

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            VLPPHEP VVR+AVNHFLQK+ GD+ ++DV+ VP DFHAR++AQERTYFYR+LSG +PLS
Sbjct: 126  VLPPHEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQERTYFYRLLSGSEPLS 185

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
             FEK++AWHV E LDL  MQEAC++LVGHHDFSSFRAAGCQAKSPI+TLDEL V E P  
Sbjct: 186  TFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVSEAPPT 245

Query: 609  PNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNP 788
            P F         +  E+K + S+TE   DS + +         D+     D  G      
Sbjct: 246  PYF--------PSISEKKQNNSSTE---DSHACSREPEIDLPIDSFSNSDDEVG------ 288

Query: 789  NGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILK 968
               S GI   GFG ++ H  YVV ARARSFLYHQVRLLVG LK VGTG+++  DVE+IL 
Sbjct: 289  ---SNGITDLGFGIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILN 345

Query: 969  ARTITSAPPMAPSCGLYLAEVKYDFRCD 1052
            A+T+T+A PMAP+ GLYL  VKYD   D
Sbjct: 346  AKTVTAASPMAPAYGLYLGCVKYDLPRD 373


>ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca subsp.
            vesca]
          Length = 350

 Score =  366 bits (939), Expect = 1e-98
 Identities = 191/322 (59%), Positives = 227/322 (70%)
 Frame = +3

Query: 75   KQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVL 254
            +Q +  RTV GVLE+AF KF+GQPVS   SSRTD GVHAL NV HVD+ERISKR PGEVL
Sbjct: 59   QQQSNCRTVVGVLEEAFRKFIGQPVSIFCSSRTDAGVHALSNVCHVDIERISKRKPGEVL 118

Query: 255  PPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVF 434
            PPHEP VV++AVNHFLQK  GD+M+VDV+ VP DFHARF+AQERTYFYR+LSG +PLS F
Sbjct: 119  PPHEPIVVQRAVNHFLQKNEGDVMVVDVRSVPADFHARFKAQERTYFYRLLSGPEPLSTF 178

Query: 435  EKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPN 614
            EKD+AWH+ E+LD+  MQEAC+ILVGHHDFSSFRAAGCQAKSPI+TLDEL V E+ + PN
Sbjct: 179  EKDRAWHIPEELDVLAMQEACKILVGHHDFSSFRAAGCQAKSPIRTLDELNVSEVVSSPN 238

Query: 615  FSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNG 794
            F P +       V++ +  +                   N +A      NGG        
Sbjct: 239  F-PTIAERTRNLVQKDIQCT------------------NNPEADCHSSFNGG-------- 271

Query: 795  DSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILKAR 974
                    GFG +K HR  VV ARAR+FLYHQVRLLVG LK VGTG +   DVE+IL A+
Sbjct: 272  -----TDQGFGLRKKHRCIVVTARARAFLYHQVRLLVGVLKCVGTGDLKIPDVERILNAK 326

Query: 975  TITSAPPMAPSCGLYLAEVKYD 1040
            T+T+A PMAP+CGLYL  V+YD
Sbjct: 327  TVTAASPMAPACGLYLGHVRYD 348


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Glycine max]
          Length = 369

 Score =  364 bits (935), Expect = 4e-98
 Identities = 200/326 (61%), Positives = 231/326 (70%), Gaps = 2/326 (0%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQKQ   +RTV G LE+AF+KFVGQPVS   SSRTD GVHAL NV HVD++RISKR PGE
Sbjct: 65   SQKQ-LNVRTVVGALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGE 123

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            VLPPHEP VV +AVNHFLQK   DLM++DV+ VP DFHARF+AQERTYFYR+LSG +PLS
Sbjct: 124  VLPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEPLS 183

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
             FEKD+AWHV E+L LP MQEACR+LVG HDFSSFRAAGCQAKSPI+TLDEL V E+   
Sbjct: 184  TFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVNEVIES 243

Query: 609  PNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNP 788
            P F   M          KVS       GD  S            +  TE D   I   NP
Sbjct: 244  PYFPSLMDREQ----HNKVS-------GDLRSC-----------SNNTETDIPPI--SNP 279

Query: 789  NGDSL--GINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKI 962
            + D +       GFG+++ HR  VV ARARSFLYHQVRLLVG LK+ GTG ++  DVE+I
Sbjct: 280  SIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERI 339

Query: 963  LKARTITSAPPMAPSCGLYLAEVKYD 1040
            L A+T+T+A PMAP+CGLYL EVKYD
Sbjct: 340  LNAKTVTAASPMAPACGLYLGEVKYD 365


>gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
          Length = 373

 Score =  364 bits (934), Expect = 5e-98
 Identities = 198/328 (60%), Positives = 233/328 (71%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQ+QP   RTV GVLE+AF KF+GQPVS   SSRTD GVHAL NV HVD+ERISKR PGE
Sbjct: 67   SQQQPNC-RTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGE 125

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            VLPPHEP VVR+AVNHFLQ  G D+ ++DV+ VP DFHAR++AQERTYFYR+LSG +PLS
Sbjct: 126  VLPPHEPSVVRRAVNHFLQSEG-DITVIDVRCVPNDFHARYKAQERTYFYRLLSGSEPLS 184

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
             FEK++AWHV E LDL  MQEAC++LVGHHDFSSFRAAGCQAKSPI+TLDEL V E P  
Sbjct: 185  TFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVSEAPPT 244

Query: 609  PNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNP 788
            P F         +  E+K + S+TE   DS + +         D+     D  G      
Sbjct: 245  PYF--------PSISEKKQNNSSTE---DSHACSREPEIDLPIDSFSNSDDEVG------ 287

Query: 789  NGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILK 968
               S GI   GFG ++ H  YVV ARARSFLYHQVRLLVG LK VGTG+++  DVE+IL 
Sbjct: 288  ---SNGITDLGFGIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILN 344

Query: 969  ARTITSAPPMAPSCGLYLAEVKYDFRCD 1052
            A+T+T+A PMAP+ GLYL  VKYD   D
Sbjct: 345  AKTVTAASPMAPAYGLYLGCVKYDLPRD 372


>gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]
          Length = 361

 Score =  363 bits (932), Expect = 9e-98
 Identities = 190/324 (58%), Positives = 230/324 (70%), Gaps = 1/324 (0%)
 Frame = +3

Query: 72   QKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEV 251
            QKQ T  RTV GVLEDAF KFVGQPVS + SSRTD GVHAL NV HVD+ERISKR PGEV
Sbjct: 59   QKQLTD-RTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHALSNVCHVDIERISKRKPGEV 117

Query: 252  LPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSV 431
            L PHEP VVR+AVNHFLQK  GDL ++DV+ VP DFHAR++AQERTYFYR+LSG + LS 
Sbjct: 118  LQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKAQERTYFYRLLSGPETLST 177

Query: 432  FEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWP 611
            FEKD+AWH+ E+L+LP MQEAC++LVGHHDFSSFRA+GCQAKSPI++LDEL V E+   P
Sbjct: 178  FEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQAKSPIRSLDELSVVEVTRSP 237

Query: 612  NFSPCMTANASAAVERKVSISTTERIGDSDSSAVVE-RNRENFDATFTERDNGGILCQNP 788
             F   M        E  ++++       S+S  V+   +    D     +++        
Sbjct: 238  YFPSVMDR------ENPINVTDDLHCFHSNSETVIPLGSSARIDEVSASKED-------- 283

Query: 789  NGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILK 968
                      GFG+++ HR  VV ARAR+FLYHQVRLLVG LK VGTG I+  DVE+IL 
Sbjct: 284  ---------VGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILN 334

Query: 969  ARTITSAPPMAPSCGLYLAEVKYD 1040
            A+T+T+  PMAP+CGLYL EVKYD
Sbjct: 335  AKTVTATSPMAPACGLYLGEVKYD 358


>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
            gi|297739525|emb|CBI29707.3| unnamed protein product
            [Vitis vinifera]
          Length = 380

 Score =  362 bits (930), Expect = 2e-97
 Identities = 192/326 (58%), Positives = 231/326 (70%), Gaps = 4/326 (1%)
 Frame = +3

Query: 75   KQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVL 254
            +Q    RTV G L++AF KF+GQPVS   SSRTD GVHAL NV HVD+ERISKR PGEVL
Sbjct: 79   QQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 138

Query: 255  PPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVF 434
            PPHEP VVR+AVNHFLQK  GD+M++DV+ VP DFHAR++A+ERTYFYR+LSG +PLS F
Sbjct: 139  PPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERTYFYRLLSGPEPLSSF 198

Query: 435  EKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPN 614
            EKD+AWHV EDLDL  MQ+ACR+LVG HDFSSFRAAGCQAKSPI+TLDEL V E+   P 
Sbjct: 199  EKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIRTLDELCVSEVLPTPY 258

Query: 615  FSPCMTANA--SAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNP 788
            F P +T  A  +   E  ++ S    + DS S+A    N +  D                
Sbjct: 259  F-PSITERAQNNFTEENPLACSNNAEVPDSPSTA----NHDRLD---------------- 297

Query: 789  NGDSLGINGC--GFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKI 962
                 G NG   GFG ++ HR ++V ARARSFLYHQVRLLVG +K VGTG ++  DVE+I
Sbjct: 298  -----GFNGAGQGFGVRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERI 352

Query: 963  LKARTITSAPPMAPSCGLYLAEVKYD 1040
            L A+T+T+A PMAP+CGLYL  V YD
Sbjct: 353  LNAKTVTAASPMAPACGLYLGNVNYD 378


>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
            gi|255637177|gb|ACU18919.1| unknown [Glycine max]
          Length = 370

 Score =  358 bits (920), Expect = 2e-96
 Identities = 198/326 (60%), Positives = 228/326 (69%), Gaps = 2/326 (0%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQKQ   +RTV GVLE+AF+KFVGQPVS   SSRT  GVHAL NV HVD++RISKR PGE
Sbjct: 66   SQKQ-LNVRTVVGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNVCHVDIQRISKRRPGE 124

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            VL PHEP VV +AVNHFLQK   DLM++DV+ VP DFHARF+AQER YFYR+LSG +PLS
Sbjct: 125  VLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFYRLLSGPEPLS 184

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
             FEKD+AWHV E+L LP MQEACR+LVG HDFSSFRAAGCQAKSPI+TLDEL V E+   
Sbjct: 185  TFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIRTLDELSVNEVIES 244

Query: 609  PNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNP 788
            P F   M          KVS       GD  S      N    D   T          NP
Sbjct: 245  PYFPSLMDREQ----HNKVS-------GDLRSCP----NNSETDIPPT---------SNP 280

Query: 789  NGDSL--GINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKI 962
            + D +       GFG+++ HR  VV ARAR+FLYHQVRLLVG LK+VGTG ++  DVE+I
Sbjct: 281  SIDKVMASSQDVGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERI 340

Query: 963  LKARTITSAPPMAPSCGLYLAEVKYD 1040
            L ART+T+A PMAP+CGLYL EVKYD
Sbjct: 341  LNARTVTAASPMAPACGLYLGEVKYD 366


>ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutrema salsugineum]
            gi|557095305|gb|ESQ35887.1| hypothetical protein
            EUTSA_v10007981mg [Eutrema salsugineum]
          Length = 368

 Score =  357 bits (916), Expect = 7e-96
 Identities = 185/323 (57%), Positives = 230/323 (71%)
 Frame = +3

Query: 75   KQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVL 254
            +Q  T RTV GVL++AF KF+GQPV    SSRTD GVHAL NV HVD+ERISKR PGEVL
Sbjct: 76   QQQATDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 135

Query: 255  PPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVF 434
            PPHEP VV++AVNHFLQ+  GD+M++DV+ VP ++HAR++A+ERTYFYR+LSG DPLS+ 
Sbjct: 136  PPHEPGVVQRAVNHFLQRNDGDVMVIDVRCVPSNYHARYKARERTYFYRLLSGSDPLSIL 195

Query: 435  EKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPN 614
            EKD+AWHV E+LDL  MQEACR+LVG HDFSSFRAAGCQAKSPI++LDEL V E+P+ P 
Sbjct: 196  EKDRAWHVPEELDLRSMQEACRVLVGTHDFSSFRAAGCQAKSPIRSLDELNVTEVPSTPY 255

Query: 615  FSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNG 794
            F P +T              T   + + D  A   + +       T+            G
Sbjct: 256  F-PSITER------------TPSYLNNGDPLACSSQAKTETAGVSTD-----------GG 291

Query: 795  DSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILKAR 974
            D+       FG ++ HR YVV AR R+FLYHQVRLLV  LK VGTG+++  DVE+ILKA+
Sbjct: 292  DT-------FGVRRRHRCYVVTARGRAFLYHQVRLLVAALKCVGTGELTVSDVERILKAK 344

Query: 975  TITSAPPMAPSCGLYLAEVKYDF 1043
            T+T+A PMAP+CGLYLA VKY+F
Sbjct: 345  TVTAAKPMAPACGLYLARVKYEF 367


>ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Populus trichocarpa]
            gi|550312358|gb|ERP48449.1| hypothetical protein
            POPTR_0022s00690g [Populus trichocarpa]
          Length = 370

 Score =  357 bits (915), Expect = 9e-96
 Identities = 189/322 (58%), Positives = 226/322 (70%)
 Frame = +3

Query: 75   KQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVL 254
            +Q    RTV GVL++AF KF+GQPV+  +SSRTD GVHAL NV HVD+ERISKR PGEVL
Sbjct: 67   QQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNVCHVDVERISKRKPGEVL 126

Query: 255  PPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVF 434
            PPHEP VVRKAVNHFLQK  GD+M+ DV+ VP  FHARF+AQERTYFYR+L G + LS F
Sbjct: 127  PPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVPAHFHARFKAQERTYFYRLLIGPELLSTF 186

Query: 435  EKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPN 614
            EKD+AWHV+E+LDL  MQEAC++LVGHHDFSSFRA+GCQAKSP +TL+EL V E+ + P 
Sbjct: 187  EKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSPFRTLEELSVLEVVSTPY 246

Query: 615  FSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNG 794
            F                  S TER  +S +    E      +   T    G I      G
Sbjct: 247  FP-----------------SITEREQNSSNG---EGPHSFHNKCKTGLPTGSISNGFMAG 286

Query: 795  DSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILKAR 974
             S      GFG ++ HR YV+ AR+RSFLYHQVRLLVG LKSVGTG ++  DVE+IL AR
Sbjct: 287  GSNSGTDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNAR 346

Query: 975  TITSAPPMAPSCGLYLAEVKYD 1040
            +IT+A PMAP+CGLYL  VKY+
Sbjct: 347  SITAASPMAPACGLYLGHVKYE 368


>ref|XP_006858556.1| hypothetical protein AMTR_s00071p00170380 [Amborella trichopoda]
            gi|548862665|gb|ERN20023.1| hypothetical protein
            AMTR_s00071p00170380 [Amborella trichopoda]
          Length = 367

 Score =  355 bits (912), Expect = 2e-95
 Identities = 189/328 (57%), Positives = 228/328 (69%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQKQP   RTV G LE+AF KF+GQPVS   SSRTD GVHAL NV HVD+ERISKR P E
Sbjct: 70   SQKQPNC-RTVMGALEEAFHKFIGQPVSIAFSSRTDAGVHALSNVCHVDVERISKRKPNE 128

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            +LPPHEP VV++AVNHFLQK GGD+M++DV+ VP DFHARF AQERTYFYR+LS  +PLS
Sbjct: 129  LLPPHEPGVVKRAVNHFLQKDGGDMMVIDVRFVPPDFHARFMAQERTYFYRLLSSPEPLS 188

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
             FEK++AWHV EDLD+  M  AC +LVGHHDFSSFRAAGCQAKSP+KTLDEL V E+   
Sbjct: 189  TFEKERAWHVPEDLDIHAMGAACGVLVGHHDFSSFRAAGCQAKSPVKTLDELHVSEVLPS 248

Query: 609  PNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNP 788
            PNF          A ER            + ++ + E N    DA   E  NG   C+  
Sbjct: 249  PNF--------PTAFER------------THNNTIEETNASKRDAADEEDLNGSRKCRQ- 287

Query: 789  NGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILK 968
                       FG+++ H+ YV+ ARARSFLYHQVRLLVG LK+VG+G ++  DV+ IL+
Sbjct: 288  -----------FGQRRTHQCYVITARARSFLYHQVRLLVGVLKAVGSGVLTVADVKCILE 336

Query: 969  ARTITSAPPMAPSCGLYLAEVKYDFRCD 1052
            A+ +T+A PMAP+ GLYL  VKY+F  D
Sbjct: 337  AKDVTAASPMAPASGLYLGIVKYNFDSD 364


>ref|XP_006471140.1| PREDICTED: tRNA pseudouridine synthase-like 1-like isoform X1 [Citrus
            sinensis]
          Length = 383

 Score =  354 bits (909), Expect = 4e-95
 Identities = 193/324 (59%), Positives = 229/324 (70%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQKQ    RTV GVLE+AF KF+GQPVS  +SSRTD GVHA  NV HVD+ERISKR PGE
Sbjct: 74   SQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGE 132

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            VLPPH+  VVR+AVNHFLQK+ GD+M+ DV+ VP DFHARFRAQERTYFYRILSG +PLS
Sbjct: 133  VLPPHDSSVVRRAVNHFLQKSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLS 192

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
            VFEKD+AWHVTE+LDL  MQEAC++LVG HDFSSFRA+GCQA SPI+TLDEL V E+ + 
Sbjct: 193  VFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVST 252

Query: 609  PNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNP 788
              F    + N  + V    SI  + ++G                               P
Sbjct: 253  ALFP---SINQDSPV--LSSIDNSSKLG------------------------------MP 277

Query: 789  NGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILK 968
            NG S       FG +K HR Y V+ARARSFLYHQVRL+VG LK+VGTG+++  DVE+ILK
Sbjct: 278  NGGS-----NVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILK 332

Query: 969  ARTITSAPPMAPSCGLYLAEVKYD 1040
            A+T+T+A PMAP+CGL L  VKYD
Sbjct: 333  AKTVTAASPMAPACGLSLGFVKYD 356


>ref|XP_006305124.1| hypothetical protein CARUB_v10009493mg [Capsella rubella]
            gi|482573835|gb|EOA38022.1| hypothetical protein
            CARUB_v10009493mg [Capsella rubella]
          Length = 370

 Score =  354 bits (908), Expect = 6e-95
 Identities = 184/323 (56%), Positives = 235/323 (72%)
 Frame = +3

Query: 75   KQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVL 254
            +Q  T RTV GVL++AF KF+GQPV    SSRTD GVHAL NV HVD+ERISKR PGEVL
Sbjct: 71   QQQATDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 130

Query: 255  PPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVF 434
            PPHEP VV+KAVNHFLQ+  GD+M++DV+ VP ++HAR++A+ERTYFYRILSG DPLS+ 
Sbjct: 131  PPHEPGVVQKAVNHFLQRKDGDVMVIDVRCVPSNYHARYKARERTYFYRILSGSDPLSIL 190

Query: 435  EKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPN 614
            EKD+ WHV E+L+L  MQEAC++LVG HDFSSFRAAGCQAKS +++LDEL V E+P+ P 
Sbjct: 191  EKDRCWHVPEELNLRSMQEACKVLVGTHDFSSFRAAGCQAKSAMRSLDELSVTEVPSTPY 250

Query: 615  FSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNG 794
            F P +T  AS              + + D  A   +++       T   N G +  + +G
Sbjct: 251  F-PSITERAS-------------NLNNGDPFACSSQHKTETAGVGT---NVGEVEGSTDG 293

Query: 795  DSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILKAR 974
            DS       FG ++ HR YVV AR+R FLYHQVRLLVG LKSVGTG+++  DVE+IL+A+
Sbjct: 294  DS-------FGARRRHRCYVVTARSRGFLYHQVRLLVGVLKSVGTGELTVADVERILEAK 346

Query: 975  TITSAPPMAPSCGLYLAEVKYDF 1043
            T++++ PMAP+ GLYLA VKY+F
Sbjct: 347  TVSASKPMAPASGLYLARVKYEF 369


>ref|XP_003592926.1| tRNA pseudouridine synthase A [Medicago truncatula]
            gi|355481974|gb|AES63177.1| tRNA pseudouridine synthase A
            [Medicago truncatula]
          Length = 375

 Score =  354 bits (908), Expect = 6e-95
 Identities = 190/338 (56%), Positives = 230/338 (68%), Gaps = 15/338 (4%)
 Frame = +3

Query: 72   QKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEV 251
            QKQ T  RTV GVLEDAF KFVGQPVS + SSRTD GVHAL NV HVD+ERISKR PGEV
Sbjct: 59   QKQLTD-RTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHALSNVCHVDIERISKRKPGEV 117

Query: 252  LPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSV 431
            L PHEP VVR+AVNHFLQK  GDL ++DV+ VP DFHAR++AQERTYFYR+LSG + LS 
Sbjct: 118  LQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKAQERTYFYRLLSGPETLST 177

Query: 432  FEKDKAWHVTEDLDLP--------------KMQEACRILVGHHDFSSFRAAGCQAKSPIK 569
            FEKD+AWH+ E+L+LP               MQEAC++LVGHHDFSSFRA+GCQAKSPI+
Sbjct: 178  FEKDRAWHIPEELNLPAMQTYHMRCESLMISMQEACKVLVGHHDFSSFRASGCQAKSPIR 237

Query: 570  TLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVE-RNRENFDAT 746
            +LDEL V E+   P F   M        E  ++++       S+S  V+   +    D  
Sbjct: 238  SLDELSVVEVTRSPYFPSVMDR------ENPINVTDDLHCFHSNSETVIPLGSSARIDEV 291

Query: 747  FTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVG 926
               +++                  GFG+++ HR  VV ARAR+FLYHQVRLLVG LK VG
Sbjct: 292  SASKED-----------------VGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVG 334

Query: 927  TGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYD 1040
            TG I+  DVE+IL A+T+T+  PMAP+CGLYL EVKYD
Sbjct: 335  TGNITVTDVERILNAKTVTATSPMAPACGLYLGEVKYD 372


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 372

 Score =  353 bits (907), Expect = 7e-95
 Identities = 194/329 (58%), Positives = 228/329 (69%), Gaps = 5/329 (1%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQKQ    RTV GVLE+AF KF+GQ VS  +SSRTD GVHAL NV HVD+ERISKR PGE
Sbjct: 70   SQKQLNG-RTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNVCHVDIERISKRKPGE 128

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            VLPPHEP VVR+AVNHFLQK  GD+M+ DV+ VP DFHARF+AQERTYFYR LSG +PLS
Sbjct: 129  VLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQERTYFYRFLSGPEPLS 188

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
             FEKD+AWHV EDLD+  MQEAC++LVGHHDFSSFRA+GCQAKSPI+TL E+ V E+ + 
Sbjct: 189  TFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSPIRTLAEISVSEVAST 248

Query: 609  PNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATF-----TERDNGGI 773
              F                  S TER          E+N EN + +      T+   G  
Sbjct: 249  LYFP-----------------SITER----------EQNCENGENSCCKKFKTDLPMGSH 281

Query: 774  LCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDV 953
               N    S G    GFG ++ HR +VV ARARSFLYHQVRLLVG LKSVG G ++  DV
Sbjct: 282  SNTNVAESSFGETDLGFGIRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDV 341

Query: 954  EKILKARTITSAPPMAPSCGLYLAEVKYD 1040
            E+IL A+++T+A PMAP+ GLYL  VKYD
Sbjct: 342  ERILSAKSVTAASPMAPARGLYLGHVKYD 370


>ref|XP_002331109.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score =  353 bits (907), Expect = 7e-95
 Identities = 188/322 (58%), Positives = 225/322 (69%)
 Frame = +3

Query: 75   KQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVL 254
            +Q    RTV GVL++AF KF+GQPV+  +SSRTD GVHAL NV HVD+ERISKR PGEVL
Sbjct: 23   QQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNVCHVDVERISKRKPGEVL 82

Query: 255  PPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVF 434
            PPHEP VVRKAVNHFLQK  GD+M+ DV+ V   FHARF+AQERTYFYR+L G + LS F
Sbjct: 83   PPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVSAHFHARFKAQERTYFYRLLIGPELLSTF 142

Query: 435  EKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPN 614
            EKD+AWHV+E+LDL  MQEAC++LVGHHDFSSFRA+GCQAKSP +TL+EL V E+ + P 
Sbjct: 143  EKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSPFRTLEELSVLEVVSTPY 202

Query: 615  FSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNG 794
            F                  S TER  +S +    E      +   T    G I      G
Sbjct: 203  FP-----------------SITEREQNSSNG---EGPHSFHNKCKTGLPTGSISNGFMAG 242

Query: 795  DSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILKAR 974
             S      GFG ++ HR YV+ AR+RSFLYHQVRLLVG LKSVGTG ++  DVE+IL AR
Sbjct: 243  GSNSGTDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNAR 302

Query: 975  TITSAPPMAPSCGLYLAEVKYD 1040
            +IT+A PMAP+CGLYL  VKY+
Sbjct: 303  SITAASPMAPACGLYLGHVKYE 324


>gb|ESW20555.1| hypothetical protein PHAVU_006G218900g [Phaseolus vulgaris]
          Length = 373

 Score =  353 bits (905), Expect = 1e-94
 Identities = 190/325 (58%), Positives = 227/325 (69%), Gaps = 1/325 (0%)
 Frame = +3

Query: 69   SQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGE 248
            SQKQ  T RTV G LE+AF KFVG PVS   SSRTD GVHAL NV HVD++R SKR PGE
Sbjct: 69   SQKQ-LTCRTVVGALEEAFAKFVGHPVSVSCSSRTDAGVHALSNVCHVDIQRTSKRKPGE 127

Query: 249  VLPPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLS 428
            VLPPHEP VV +AVNHFLQK   DL ++DV+ VP DFHAR++A ERTYFYR+LSG +PLS
Sbjct: 128  VLPPHEPAVVGRAVNHFLQKHDSDLTVIDVRCVPSDFHARYKALERTYFYRLLSGPEPLS 187

Query: 429  VFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTW 608
             FEKD+AWHV+E+L+LP MQEACR+LVG HDFSSFRAAGCQAKSPI+TLDEL V E+   
Sbjct: 188  TFEKDRAWHVSEELNLPAMQEACRVLVGSHDFSSFRAAGCQAKSPIRTLDELNVSEVIES 247

Query: 609  PNFSPCMTANASAAVERKVSISTTERIGDSDSSA-VVERNRENFDATFTERDNGGILCQN 785
             +F   M        E    +S+  R   S+S   +   +    D   T  ++       
Sbjct: 248  LHFPSVMDR------EGHDKVSSDPRSYPSNSETDIPPSSSPCIDKVTTSSED------- 294

Query: 786  PNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKIL 965
                       GFG+++ HR  VV ARARSFLYHQVRLLVG LK+VGTG ++  DVE+IL
Sbjct: 295  ----------VGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAVGTGNLTIPDVERIL 344

Query: 966  KARTITSAPPMAPSCGLYLAEVKYD 1040
             A+++TSA PMAP+CGLYL EVKYD
Sbjct: 345  NAKSVTSASPMAPACGLYLGEVKYD 369


>ref|NP_172451.2| pseudouridine synthase family protein [Arabidopsis thaliana]
            gi|332190374|gb|AEE28495.1| pseudouridine synthase family
            protein [Arabidopsis thaliana]
          Length = 372

 Score =  352 bits (904), Expect = 2e-94
 Identities = 181/323 (56%), Positives = 232/323 (71%)
 Frame = +3

Query: 75   KQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVL 254
            +Q    RTV GVL++AF KF+GQPV    SSRTD GVHAL NV HVD+ERISKR PGEVL
Sbjct: 72   QQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 131

Query: 255  PPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVF 434
            PPHEP VV++AVNHFLQ+  GD+M++DV+ VP ++HAR++AQERTYFYR+LSG DPLS+ 
Sbjct: 132  PPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGSDPLSIL 191

Query: 435  EKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPN 614
            EKD+ WHV E+L+L  MQEACR+LVG HDFSSFRAAGCQAKSP+++LDEL + E+P+ P 
Sbjct: 192  EKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPY 251

Query: 615  FSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNG 794
            F P +T              T   + + D  A   + +       T   N G +  +  G
Sbjct: 252  F-PSITER------------TLSNLNNGDPLACSNQPKSETAGVTT---NVGEVEGSTEG 295

Query: 795  DSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILKAR 974
            DS       FGR++ HR YVV AR+R FLYHQVRL+VG LK VGTG+++  DVE+IL+A+
Sbjct: 296  DS-------FGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAK 348

Query: 975  TITSAPPMAPSCGLYLAEVKYDF 1043
            T+++A PMAP+ GLYLA V+Y+F
Sbjct: 349  TVSAAKPMAPASGLYLARVRYEF 371


>dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana]
            gi|51971573|dbj|BAD44451.1| unnamed protein product
            [Arabidopsis thaliana]
          Length = 368

 Score =  352 bits (904), Expect = 2e-94
 Identities = 181/323 (56%), Positives = 232/323 (71%)
 Frame = +3

Query: 75   KQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVL 254
            +Q    RTV GVL++AF KF+GQPV    SSRTD GVHAL NV HVD+ERISKR PGEVL
Sbjct: 68   QQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 127

Query: 255  PPHEPDVVRKAVNHFLQKAGGDLMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVF 434
            PPHEP VV++AVNHFLQ+  GD+M++DV+ VP ++HAR++AQERTYFYR+LSG DPLS+ 
Sbjct: 128  PPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGSDPLSIL 187

Query: 435  EKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPN 614
            EKD+ WHV E+L+L  MQEACR+LVG HDFSSFRAAGCQAKSP+++LDEL + E+P+ P 
Sbjct: 188  EKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPY 247

Query: 615  FSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNG 794
            F P +T              T   + + D  A   + +       T   N G +  +  G
Sbjct: 248  F-PSITER------------TLSNLNNGDPLACSNQPKSETAGVTT---NVGEVEGSTGG 291

Query: 795  DSLGINGCGFGRKKGHRGYVVVARARSFLYHQVRLLVGTLKSVGTGKISCDDVEKILKAR 974
            DS       FGR++ HR YVV AR+R FLYHQVRL+VG LK VGTG+++  DVE+IL+A+
Sbjct: 292  DS-------FGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAK 344

Query: 975  TITSAPPMAPSCGLYLAEVKYDF 1043
            T+++A PMAP+ GLYLA V+Y+F
Sbjct: 345  TVSAAKPMAPASGLYLARVRYEF 367