BLASTX nr result
ID: Ephedra28_contig00018693
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00018693
(696 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 416 e-114
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 416 e-114
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 414 e-113
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 414 e-113
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 414 e-113
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 412 e-113
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 412 e-113
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 409 e-112
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 392 e-107
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 341 1e-91
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 286 6e-75
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 253 4e-65
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 253 4e-65
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 246 4e-63
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 240 4e-61
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 238 1e-60
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 238 1e-60
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 237 3e-60
ref|YP_002341559.1| replication-associated protein [Schlumberger... 228 1e-57
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 221 1e-55
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 416 bits (1069), Expect = e-114
Identities = 200/231 (86%), Positives = 214/231 (92%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+T
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISV
Sbjct: 598 LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658 IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALI
Sbjct: 718 RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALI 768
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 416 bits (1069), Expect = e-114
Identities = 200/231 (86%), Positives = 214/231 (92%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+T
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISV
Sbjct: 598 LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658 IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALI
Sbjct: 718 RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALI 768
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 414 bits (1065), Expect = e-113
Identities = 199/231 (86%), Positives = 213/231 (92%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+T
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISV
Sbjct: 598 LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658 IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALI
Sbjct: 718 RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALI 768
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 414 bits (1065), Expect = e-113
Identities = 199/231 (86%), Positives = 213/231 (92%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+T
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISV
Sbjct: 598 LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658 IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALI
Sbjct: 718 RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALI 768
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 414 bits (1065), Expect = e-113
Identities = 199/231 (86%), Positives = 213/231 (92%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+T
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISV
Sbjct: 598 LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658 IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALI
Sbjct: 718 RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALI 768
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 412 bits (1058), Expect = e-113
Identities = 198/231 (85%), Positives = 212/231 (91%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPI D ++LP+ATLP HW L ++L+T
Sbjct: 543 TLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILST 602
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LRSLNRFPTPW PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLTEN LAISV
Sbjct: 603 LRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISV 662
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHGAGGSGKSQALQTLLRQ+ LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S
Sbjct: 663 IHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSS 722
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
SPVVIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALI
Sbjct: 723 HSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALI 773
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 412 bits (1058), Expect = e-113
Identities = 198/231 (85%), Positives = 213/231 (92%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P ++++L+T
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILST 597
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLTEN NLAISV
Sbjct: 598 LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISV 657
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS
Sbjct: 658 IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCS 717
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALI
Sbjct: 718 RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALI 768
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 409 bits (1052), Expect = e-112
Identities = 195/231 (84%), Positives = 212/231 (91%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++++T
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIIST 597
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LRS NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML EN NLAISV
Sbjct: 598 LRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISV 657
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658 IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
+ PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALI
Sbjct: 718 RCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALI 768
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 392 bits (1006), Expect = e-107
Identities = 187/222 (84%), Positives = 202/222 (90%)
Frame = +2
Query: 29 KLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPT 208
K +GFEALEIQTDPSTG+ IMPI D R+LP+A +P HW+ P K++ TLR+LNRFPT
Sbjct: 535 KAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPT 594
Query: 209 PWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGK 388
PW PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N + AISVIHGAGGSGK
Sbjct: 595 PWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGK 654
Query: 389 SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDD 568
SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDD
Sbjct: 655 SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDD 714
Query: 569 YGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
YGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALI
Sbjct: 715 YGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALI 756
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 341 bits (874), Expect = 1e-91
Identities = 164/232 (70%), Positives = 187/232 (80%), Gaps = 1/232 (0%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-LSKVLT 178
TLPW AWLP L ALGFEA EIQTDP IMPI D++ LP T E+ + KV+
Sbjct: 518 TLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVI 577
Query: 179 TLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAIS 358
TL+ LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE L +S
Sbjct: 578 TLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLS 637
Query: 359 VIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVC 538
VIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV
Sbjct: 638 VIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVS 697
Query: 539 SKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
S +PVVIFDDYGKLPQG++EAFA+ L+L ILTGDPRQSTHHE+NE+A+I
Sbjct: 698 STAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMI 749
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 286 bits (731), Expect = 6e-75
Identities = 133/230 (57%), Positives = 173/230 (75%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 184
LPW W+PKLNALGFEA E Q P T +IMPI D+ K +P H ++L L
Sbjct: 618 LPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLL 673
Query: 185 RSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 364
++L+R PT W PD RA++FTSD+KN RTGK L +E+Q+WKE QT+ ++ + +SVI
Sbjct: 674 KALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVI 733
Query: 365 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 544
HGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ +
Sbjct: 734 HGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTN 793
Query: 545 SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
+P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I
Sbjct: 794 APSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMI 843
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 253 bits (646), Expect = 4e-65
Identities = 129/231 (55%), Positives = 157/231 (67%), Gaps = 1/231 (0%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTT 181
LPW W P L LGF+A EIQ P VIMPI + V LP + + H V+
Sbjct: 551 LPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGV 604
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKETQT+ E + + +SV
Sbjct: 605 LEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSV 664
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T+ERAF
Sbjct: 665 IHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGV 724
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+I
Sbjct: 725 SSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMI 775
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 253 bits (646), Expect = 4e-65
Identities = 129/231 (55%), Positives = 157/231 (67%), Gaps = 1/231 (0%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTT 181
LPW W P L LGF+A EIQ P VIMPI + V LP + + H V+
Sbjct: 551 LPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGV 604
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKETQT+ E + + +SV
Sbjct: 605 LEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSV 664
Query: 362 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 541
IHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T+ERAF
Sbjct: 665 IHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGV 724
Query: 542 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALI 694
SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+I
Sbjct: 725 SSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMI 775
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 246 bits (629), Expect = 4e-63
Identities = 127/228 (55%), Positives = 161/228 (70%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 184
LPW AW+PKL LGF+ ++Q DP+ G +I PI ++R +PK PE E V TL
Sbjct: 707 LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760
Query: 185 RSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 364
L R PTP+ P+ RARA+TSDVKN R G L ++ + W L E LAISVI
Sbjct: 761 DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820
Query: 365 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 544
HGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP P E+F+TFE+A +
Sbjct: 821 HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880
Query: 545 SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 688
+P+VIFDDYGKLP GY+EAF + ++++L+ILTGD +QS HHE+NE A
Sbjct: 881 TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENA 928
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 240 bits (612), Expect = 4e-61
Identities = 126/229 (55%), Positives = 156/229 (68%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 184
LPW AWL KL LGF ++Q DP+ G +I PI ++ LPK + PE N P L K+L
Sbjct: 701 LPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKMLN-- 755
Query: 185 RSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 364
S R PTP+ P RA+A++SDVKNSR G L ++ + W L EN LAISVI
Sbjct: 756 -SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVI 814
Query: 365 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 544
HGAGGSGKS+ALQ L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A +
Sbjct: 815 HGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPT 874
Query: 545 SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 691
P VIFDDYGKLP GYIEAF+ +S EL++LTGD +QS HHE+NE A+
Sbjct: 875 KPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAM 923
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 238 bits (607), Expect = 1e-60
Identities = 125/229 (54%), Positives = 156/229 (68%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 184
LPW AWL KL LGF ++Q DP+ G +I PI ++ LPK + PE N P L K+L
Sbjct: 701 LPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKMLNDQ 757
Query: 185 RSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 364
R PTP+ P RA+A++SDVKNSR G L ++ + W L EN LAISVI
Sbjct: 758 A---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVI 814
Query: 365 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 544
HGAGGSGKS+ALQ L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A +
Sbjct: 815 HGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPI 874
Query: 545 SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 691
P VIFDDYGKLP GYIEAF+ +S+EL++LTGD +QS HHE+NE A+
Sbjct: 875 KPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAM 923
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 238 bits (607), Expect = 1e-60
Identities = 125/229 (54%), Positives = 156/229 (68%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 184
LPW AWL KL LGF +++Q DP+ G +I PI V+ LPK + PE N P L K+L
Sbjct: 701 LPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKMLDDQ 757
Query: 185 RSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 364
R PTP+ P RA+A++SDVKNSR G L ++ + W L EN LAISVI
Sbjct: 758 A---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVI 814
Query: 365 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 544
HGAGGSGKS+ALQ L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A +
Sbjct: 815 HGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPT 874
Query: 545 SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 691
P VIFDDYGKLP GYIE+F+ +S EL++LTGD +QS HHE+NE A+
Sbjct: 875 KPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAM 923
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 237 bits (604), Expect = 3e-60
Identities = 124/229 (54%), Positives = 156/229 (68%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 184
LPW AWL KL LGF +++Q DP+ G +I PI V+ LPK + PE +P L K+L
Sbjct: 701 LPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKMLDNQ 757
Query: 185 RSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 364
R PTP+ P RA+A++SDVKNSR G L ++ + W L EN LAISVI
Sbjct: 758 A---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVI 814
Query: 365 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 544
HGAGGSGKS+ALQ L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A +
Sbjct: 815 HGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPT 874
Query: 545 SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 691
P VIFDDYGKLP GYIE+F+ +S EL++LTGD +QS HHE+NE A+
Sbjct: 875 KPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAM 923
>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
gi|217316801|gb|AAR11537.2| replication-associated
protein [Schlumbergera virus X]
Length = 1545
Score = 228 bits (581), Expect = 1e-57
Identities = 116/229 (50%), Positives = 149/229 (65%)
Frame = +2
Query: 5 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 184
LPW AWLP LN GF+ + Q +P+ G +I PI D++ L K + PG+++VLT +
Sbjct: 716 LPWQAWLPILNVAGFKGTQSQVNPNDGSLISPILDIKKLEKTPA----SHPGINEVLTCI 771
Query: 185 RSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 364
+R PTP+ PD RA+AF SDVKN R G L +++ W E + TE + +SVI
Sbjct: 772 ---HRLPTPFTPDPLRAKAFGSDVKNLRIGALLKHQSKEWLEAFSRKTEMPPRTIGLSVI 828
Query: 365 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 544
HG GGSGKS ALQ LR NP+ I V+LPTNELRLDW +KLP P +TFE++ +
Sbjct: 829 HGTGGSGKSHALQDFLRNNPEERITVILPTNELRLDWQRKLPQAHPNSLKTFEKSLLVGA 888
Query: 545 SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 691
S VVI DDY KLP G+IEA+ T++ LE +ILTGDP QS HHE NE AL
Sbjct: 889 SSVVIMDDYTKLPAGFIEAYINTNSGLETLILTGDPNQSFHHEPNENAL 937
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 221 bits (564), Expect = 1e-55
Identities = 103/132 (78%), Positives = 116/132 (87%)
Frame = +2
Query: 2 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 181
TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPI D ++LP+A P HW P + ++++T
Sbjct: 538 TLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIIST 597
Query: 182 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 361
LRSLNR+PTPW PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLTE+ NLAISV
Sbjct: 598 LRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISV 657
Query: 362 IHGAGGSGKSQA 397
IHGAGGSGKSQA
Sbjct: 658 IHGAGGSGKSQA 669