BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00018469
         (1615 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006473155.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   417   e-114
ref|XP_006606191.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   414   e-113
ref|XP_006589470.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   414   e-113
ref|XP_003555416.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   414   e-113
ref|XP_006434555.1| hypothetical protein CICLE_v10001190mg [Citr...   413   e-112
ref|XP_003535557.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   412   e-112
gb|ESW15594.1| hypothetical protein PHAVU_007G085300g [Phaseolus...   412   e-112
ref|XP_006589471.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   409   e-111
ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus ...   409   e-111
emb|CBI29343.3| unnamed protein product [Vitis vinifera]              409   e-111
gb|EOY20130.1| Pseudouridine synthase isoform 1 [Theobroma cacao]     407   e-111
ref|XP_004237844.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   405   e-110
ref|XP_004496407.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   404   e-110
ref|XP_006589473.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   403   e-109
ref|XP_004496408.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   402   e-109
ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   400   e-108
ref|XP_004984202.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   398   e-108
ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [S...   398   e-108
gb|EOY20131.1| Pseudouridine synthase family protein isoform 2 [...   396   e-107
ref|NP_001145731.1| pseudouridylate synthase [Zea mays] gi|21988...   393   e-106

>ref|XP_006473155.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Citrus sinensis]
          Length = 437

 Score =  417 bits (1072), Expect = e-114
 Identities = 215/432 (49%), Positives = 300/432 (69%), Gaps = 16/432 (3%)
 Frame = +1

Query: 91   KDLILDLQEQVKSLTARIQELES------SKLT----EKLQSKDANEEICKLAIAPIARK 240
            ++LI  LQ QV++L  R++ELE+      SKL+    EK++ K  +       +    RK
Sbjct: 6    QELISSLQWQVEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRK 65

Query: 241  EQDDFVRNNKKKIEAGAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFS 420
             +    +  KKK++   + G+L +  +R VALK++YFGQRFYGFAS+  MEPTVESEIF 
Sbjct: 66   TESGGCKTGKKKVKE-KMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124

Query: 421  ALKRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYK--GGDNRDLNEPFFNIQ 594
            AL++T+LL+ + K + YSRCGRTDKGVS+ GQVI++YLRS+ K    +N  + E     Q
Sbjct: 125  ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184

Query: 595  DTDEIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIAC 774
              DEIDYV+VLN+ LP DIRV+GW P   DF +RF C+SREYKY+F+RENL+++ M+ A 
Sbjct: 185  IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244

Query: 775  KKFIGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVR 954
            KKF+G+HDFRNFCKMDA NVH ++R+++ F+I P    + G  +  +++RG+AFLWHQVR
Sbjct: 245  KKFVGEHDFRNFCKMDAANVHNYKRRVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304

Query: 955  CMAAVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDA 1134
            CM AVLF+IGQGLES +VI+ LLDT+   RKPQY +A E+PLVL  CEFEG+ F CS DA
Sbjct: 305  CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCEFEGLKFTCSLDA 364

Query: 1135 AKDMKLHMQQQLQFNLLKSIIYHEATCN---LPEDDDAL-IPRTSRKTTHVPLSLRPTEP 1302
              D++LH++ + Q   L++ I+HEA  N   L  D ++L      +K +H+PL  RPTEP
Sbjct: 365  GHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANDQNSLRNGMVKKKASHIPLFSRPTEP 424

Query: 1303 SYEERKKKFEEK 1338
            +Y+ER+ K + +
Sbjct: 425  TYKERRAKLDSR 436


>ref|XP_006606191.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X2
            [Glycine max]
          Length = 425

 Score =  414 bits (1065), Expect = e-113
 Identities = 214/414 (51%), Positives = 291/414 (70%), Gaps = 10/414 (2%)
 Frame = +1

Query: 115  EQVKSLTARIQELES--SKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNNKKKIEAG 288
            E + +L AR +ELE+  +KL  +L     +E   KL I     +E     R +++KIE  
Sbjct: 9    ELIATLQARAKELEAENAKLLSQLADCRCHEMEKKLHIPDEKGRESKKGNRKSEEKIEK- 67

Query: 289  AIPGS----LKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKLLLEEP 456
             +PG     + + ++R VALK+ YFG+RFYGFASEA MEPTVESE+F A ++T+LL+ + 
Sbjct: 68   -MPGYNTRFMSHHSKRYVALKVTYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGDK 126

Query: 457  KSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDNRDLNEPFFNIQDTDEIDYVKVLNKA 636
            K + YSRCGRTDKGVS+ GQVI+L+LRS+ K     + N      +   EIDYV VLN+ 
Sbjct: 127  KESQYSRCGRTDKGVSSVGQVIALFLRSNLKISATNNGNSGVVLDEQHGEIDYVGVLNRV 186

Query: 637  LPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDFRNFCK 816
            LPNDIR++GWCP   DFH+RF CLSREYKY+F++ENL+I  +++A  K +G+HDFRNFCK
Sbjct: 187  LPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIPAIEVAGNKLVGEHDFRNFCK 246

Query: 817  MDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLIGQGLE 996
            MDA NVH +RR I+ F+I     R+    + V+++RG+AFLWHQVRCM AVLF++G+GLE
Sbjct: 247  MDAANVHNYRRCITLFEISSTDVRYNDNQLWVIKIRGSAFLWHQVRCMVAVLFMVGKGLE 306

Query: 997  SPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQQQLQF 1176
            SPNVID LLDTS+ +RKPQY +ASE+PLVL  CEF+ I F CSSDA + +++H+  + Q 
Sbjct: 307  SPNVIDMLLDTSRILRKPQYTMASEVPLVLQSCEFDNIKFMCSSDAGEALRVHLVNECQI 366

Query: 1177 NLLKSIIYHEATCNLP--EDDDALIP--RTSRKTTHVPLSLRPTEPSYEERKKK 1326
              L++ I+HEA  N     +D +L+P   + +K +HVPL  RPTEPSYEER+ K
Sbjct: 367  YQLQAAIFHEALLNCVPLSNDQSLLPFQGSKKKVSHVPLMSRPTEPSYEERRAK 420


>ref|XP_006589470.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X2
            [Glycine max]
          Length = 425

 Score =  414 bits (1064), Expect = e-113
 Identities = 213/419 (50%), Positives = 290/419 (69%), Gaps = 10/419 (2%)
 Frame = +1

Query: 115  EQVKSLTARIQELES--SKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNNKKKIEAG 288
            E + SL AR++ELE+  +KL  +L    ++E   K+ +      +     R +++KIE  
Sbjct: 9    ELITSLQARVKELETENAKLLSQLADCRSHEMEKKVYVPDERGGKSKKGNRKSEEKIEK- 67

Query: 289  AIPGS----LKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKLLLEEP 456
             +PG     + + +RR VALK++YFG+RFYGFASEA MEPTVESE+F A ++T+LL+   
Sbjct: 68   -MPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGNK 126

Query: 457  KSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDNRDLNEPFFNIQDTDEIDYVKVLNKA 636
            K + YSRCGRTDKGVS+ GQVI+L+LRS+ K  +  + N      +   EIDYV+VLN+ 
Sbjct: 127  KESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHGEIDYVRVLNRV 186

Query: 637  LPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDFRNFCK 816
            LPNDIR++GWCP   DFH+RF CLSREYKY+F++ENL+I  M+ A  K +G+HDFRNFCK
Sbjct: 187  LPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEHDFRNFCK 246

Query: 817  MDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLIGQGLE 996
            MDA NVH +RR+I  F+I P   R+    + V+++RG+AFLWHQVRCM  VLF++G+GLE
Sbjct: 247  MDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLFMVGKGLE 306

Query: 997  SPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQQQLQF 1176
            SPNVID LLDT++ +RKPQY +ASE+PLVL  CEF+ I F CSS+A + + +H+  + Q 
Sbjct: 307  SPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVHLVNECQI 366

Query: 1177 NLLKSIIYHEATCN---LPEDDDAL-IPRTSRKTTHVPLSLRPTEPSYEERKKKFEEKA 1341
              L++ I+HEA  N   L  D   L    + +K +HVPL  RPTEPSYEER+ K    A
Sbjct: 367  YQLQAAIFHEALLNCVPLSNDQSLLHFQGSKKKVSHVPLMSRPTEPSYEERRAKLNTVA 425


>ref|XP_003555416.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X1
            [Glycine max]
          Length = 426

 Score =  414 bits (1064), Expect = e-113
 Identities = 215/415 (51%), Positives = 292/415 (70%), Gaps = 11/415 (2%)
 Frame = +1

Query: 115  EQVKSLTARIQELES--SKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNNKKKIEAG 288
            E + +L AR +ELE+  +KL  +L     +E   KL I     +E     R +++KIE  
Sbjct: 9    ELIATLQARAKELEAENAKLLSQLADCRCHEMEKKLHIPDEKGRESKKGNRKSEEKIEK- 67

Query: 289  AIPGS----LKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKLLLEEP 456
             +PG     + + ++R VALK+ YFG+RFYGFASEA MEPTVESE+F A ++T+LL+ + 
Sbjct: 68   -MPGYNTRFMSHHSKRYVALKVTYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGDK 126

Query: 457  KSACYSRCGRTDKGVSAFGQVISLYLRSHYK-GGDNRDLNEPFFNIQDTDEIDYVKVLNK 633
            K + YSRCGRTDKGVS+ GQVI+L+LRS+ K    N   +    + Q   EIDYV VLN+
Sbjct: 127  KESQYSRCGRTDKGVSSVGQVIALFLRSNLKISATNNGNSGVVLDEQHEGEIDYVGVLNR 186

Query: 634  ALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDFRNFC 813
             LPNDIR++GWCP   DFH+RF CLSREYKY+F++ENL+I  +++A  K +G+HDFRNFC
Sbjct: 187  VLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIPAIEVAGNKLVGEHDFRNFC 246

Query: 814  KMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLIGQGL 993
            KMDA NVH +RR I+ F+I     R+    + V+++RG+AFLWHQVRCM AVLF++G+GL
Sbjct: 247  KMDAANVHNYRRCITLFEISSTDVRYNDNQLWVIKIRGSAFLWHQVRCMVAVLFMVGKGL 306

Query: 994  ESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQQQLQ 1173
            ESPNVID LLDTS+ +RKPQY +ASE+PLVL  CEF+ I F CSSDA + +++H+  + Q
Sbjct: 307  ESPNVIDMLLDTSRILRKPQYTMASEVPLVLQSCEFDNIKFMCSSDAGEALRVHLVNECQ 366

Query: 1174 FNLLKSIIYHEATCNLP--EDDDALIP--RTSRKTTHVPLSLRPTEPSYEERKKK 1326
               L++ I+HEA  N     +D +L+P   + +K +HVPL  RPTEPSYEER+ K
Sbjct: 367  IYQLQAAIFHEALLNCVPLSNDQSLLPFQGSKKKVSHVPLMSRPTEPSYEERRAK 421


>ref|XP_006434555.1| hypothetical protein CICLE_v10001190mg [Citrus clementina]
            gi|557536677|gb|ESR47795.1| hypothetical protein
            CICLE_v10001190mg [Citrus clementina]
          Length = 437

 Score =  413 bits (1061), Expect = e-112
 Identities = 212/432 (49%), Positives = 299/432 (69%), Gaps = 16/432 (3%)
 Frame = +1

Query: 91   KDLILDLQEQVKSLTARIQELES------SKLT----EKLQSKDANEEICKLAIAPIARK 240
            ++LI  LQ Q+++L  R++ELE+      SKL+    EK++ K  +       +    RK
Sbjct: 6    QELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRK 65

Query: 241  EQDDFVRNNKKKIEAGAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFS 420
             +    +  KKK++   + G+L +  +R VALK++YFGQRFYGFAS+  MEPTVESEIF 
Sbjct: 66   TESGGCKTGKKKVKE-KMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124

Query: 421  ALKRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYK--GGDNRDLNEPFFNIQ 594
            AL++T+LL+ + K + YSRCGRTDKGVS+ GQVI++YLRS+ K    +N  + E     Q
Sbjct: 125  ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184

Query: 595  DTDEIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIAC 774
              DEIDYV+VLN+ LP DIRV+GW P   DF +RF C+SR+YKY+F+RENL+++ M+ A 
Sbjct: 185  IEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSARFSCISRKYKYFFWRENLNLSAMESAG 244

Query: 775  KKFIGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVR 954
            KKF+G+HDFRNFCKMDA NVH ++R ++ F+I P    + G  +  +++RG+AFLWHQVR
Sbjct: 245  KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304

Query: 955  CMAAVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDA 1134
            CM AVLF+IGQGLES +VI+ LLDT+   RKPQY +A E+PLVL  C+F+G+ F CS DA
Sbjct: 305  CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364

Query: 1135 AKDMKLHMQQQLQFNLLKSIIYHEATCN---LPEDDDAL-IPRTSRKTTHVPLSLRPTEP 1302
              D++LH++ + Q   L++ I+HEA  N   L  D ++L      +K +H+PL  RPTEP
Sbjct: 365  GHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANDQNSLRNGMVKKKASHIPLFSRPTEP 424

Query: 1303 SYEERKKKFEEK 1338
            +YEER+ K + +
Sbjct: 425  TYEERRAKLDSR 436


>ref|XP_003535557.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X1
            [Glycine max]
          Length = 426

 Score =  412 bits (1060), Expect = e-112
 Identities = 214/420 (50%), Positives = 291/420 (69%), Gaps = 11/420 (2%)
 Frame = +1

Query: 115  EQVKSLTARIQELES--SKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNNKKKIEAG 288
            E + SL AR++ELE+  +KL  +L    ++E   K+ +      +     R +++KIE  
Sbjct: 9    ELITSLQARVKELETENAKLLSQLADCRSHEMEKKVYVPDERGGKSKKGNRKSEEKIEK- 67

Query: 289  AIPGS----LKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKLLLEEP 456
             +PG     + + +RR VALK++YFG+RFYGFASEA MEPTVESE+F A ++T+LL+   
Sbjct: 68   -MPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGNK 126

Query: 457  KSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDNRDLNEPF-FNIQDTDEIDYVKVLNK 633
            K + YSRCGRTDKGVS+ GQVI+L+LRS+ K  +  + N     + Q   EIDYV+VLN+
Sbjct: 127  KESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDYVRVLNR 186

Query: 634  ALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDFRNFC 813
             LPNDIR++GWCP   DFH+RF CLSREYKY+F++ENL+I  M+ A  K +G+HDFRNFC
Sbjct: 187  VLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEHDFRNFC 246

Query: 814  KMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLIGQGL 993
            KMDA NVH +RR+I  F+I P   R+    + V+++RG+AFLWHQVRCM  VLF++G+GL
Sbjct: 247  KMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLFMVGKGL 306

Query: 994  ESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQQQLQ 1173
            ESPNVID LLDT++ +RKPQY +ASE+PLVL  CEF+ I F CSS+A + + +H+  + Q
Sbjct: 307  ESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVHLVNECQ 366

Query: 1174 FNLLKSIIYHEATCN---LPEDDDAL-IPRTSRKTTHVPLSLRPTEPSYEERKKKFEEKA 1341
               L++ I+HEA  N   L  D   L    + +K +HVPL  RPTEPSYEER+ K    A
Sbjct: 367  IYQLQAAIFHEALLNCVPLSNDQSLLHFQGSKKKVSHVPLMSRPTEPSYEERRAKLNTVA 426


>gb|ESW15594.1| hypothetical protein PHAVU_007G085300g [Phaseolus vulgaris]
          Length = 427

 Score =  412 bits (1059), Expect = e-112
 Identities = 215/419 (51%), Positives = 292/419 (69%), Gaps = 8/419 (1%)
 Frame = +1

Query: 94   DLILDLQEQVKSLTARIQELESSKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNNKK 273
            +LI+ LQ +VK L     E+E++KL  +L    ++E   KL       +E  +     +K
Sbjct: 9    ELIVSLQARVKEL-----EIENAKLLAQLADCHSHEVDKKLHGPEGKGRESKEGNMKFEK 63

Query: 274  KIEA---GAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKLL 444
            KIE    G     + +R++R VALK++YFG+RFYGFASEA M+PTVE E+F A ++T+LL
Sbjct: 64   KIEEKKPGYDTSFMSHRSKRYVALKVMYFGKRFYGFASEAQMQPTVEFELFKAFEKTRLL 123

Query: 445  LEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYK-GGDNRDLNEPFFNIQDTDEIDYVK 621
            + + K + YSRCGRTDKGVS+ GQVI+L+LRS+ K    N   +    + +   EIDYV+
Sbjct: 124  VGDKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKLSAINNGSSGEVLDEKHEGEIDYVR 183

Query: 622  VLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDF 801
            VLN+ LP+DIR++GWCP   DFH+RF CLSREYKY+F++E L+I  M+ A  K IG HDF
Sbjct: 184  VLNRVLPHDIRILGWCPAPVDFHARFSCLSREYKYFFWKEKLNIPAMESAGNKLIGTHDF 243

Query: 802  RNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLI 981
            RNFCKMDA NVH +RR I+ F+I P   R+ G  + V++++G+AFLWHQVRCM AVLF++
Sbjct: 244  RNFCKMDAANVHNYRRHITLFEISPTDVRYNGNQLWVIKIKGSAFLWHQVRCMVAVLFMV 303

Query: 982  GQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQ 1161
            G+GLESPNVID LLDT++ VRKPQY +ASE+PLVL  CEF+ I F CS+DA   ++LH+ 
Sbjct: 304  GKGLESPNVIDMLLDTTRIVRKPQYIMASEVPLVLQCCEFDDIKFMCSTDAGDALRLHLV 363

Query: 1162 QQLQFNLLKSIIYHEATCNLP--EDDDALIP--RTSRKTTHVPLSLRPTEPSYEERKKK 1326
             + Q   L++ I+HEA  N     +D +L+P   T +K +HVPL  RPTEPSYEER+ K
Sbjct: 364  NECQIFQLQATIFHEALLNCVPLSNDQSLLPFQGTKKKVSHVPLMSRPTEPSYEERRAK 422


>ref|XP_006589471.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X3
            [Glycine max]
          Length = 420

 Score =  409 bits (1052), Expect = e-111
 Identities = 211/416 (50%), Positives = 288/416 (69%), Gaps = 7/416 (1%)
 Frame = +1

Query: 115  EQVKSLTARIQELES--SKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNNKKKIEAG 288
            E + SL AR++ELE+  +KL  +L    ++E   K+ +      +     R +++KIE  
Sbjct: 9    ELITSLQARVKELETENAKLLSQLADCRSHEMEKKVYVPDERGGKSKKGNRKSEEKIEK- 67

Query: 289  AIPGS----LKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKLLLEEP 456
             +PG     + + +RR VALK++YFG+RFYGFASEA MEPTVESE+F A ++T+LL+   
Sbjct: 68   -MPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGNK 126

Query: 457  KSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDNRDLNEPF-FNIQDTDEIDYVKVLNK 633
            K + YSRCGRTDKGVS+ GQVI+L+LRS+ K  +  + N     + Q   EIDYV+VLN+
Sbjct: 127  KESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDYVRVLNR 186

Query: 634  ALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDFRNFC 813
             LPNDIR++GWCP   DFH+RF CLSREYKY+F++ENL+I  M+ A  K +G+HDFRNFC
Sbjct: 187  VLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEHDFRNFC 246

Query: 814  KMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLIGQGL 993
            KMDA NVH +RR+I  F+I P   R+    + V+++RG+AFLWHQVRCM  VLF++G+GL
Sbjct: 247  KMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLFMVGKGL 306

Query: 994  ESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQQQLQ 1173
            ESPNVID LLDT++ +RKPQY +ASE+PLVL  CEF+ I F CSS+A + + +H+  + Q
Sbjct: 307  ESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVHLVNECQ 366

Query: 1174 FNLLKSIIYHEATCNLPEDDDALIPRTSRKTTHVPLSLRPTEPSYEERKKKFEEKA 1341
               L++ I+HEA  N           + +K +HVPL  RPTEPSYEER+ K    A
Sbjct: 367  IYQLQAAIFHEALLNY--QSLLHFQGSKKKVSHVPLMSRPTEPSYEERRAKLNTVA 420


>ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223533532|gb|EEF35272.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 438

 Score =  409 bits (1052), Expect = e-111
 Identities = 217/429 (50%), Positives = 290/429 (67%), Gaps = 9/429 (2%)
 Frame = +1

Query: 70   EDELRTAKDLILDLQEQVKSLTARIQELESSKLTEKLQSKDANEEICKLAIAPIARKEQD 249
            E+E    +++I+ L+ Q+ SL ++++ELE+     KL S  AN   C  A   +     +
Sbjct: 18   EEEEEEEEEVIIKLKSQIASLKSKVKELEAENA--KLSSTLANCR-CNQAEEKLNVSTGE 74

Query: 250  DFVRNNKKKI---EAGAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFS 420
              ++N KKK     +G     + +  +R VALK++YFGQRFYGF+SE  M+PTVESEIF 
Sbjct: 75   HNIKNIKKKTIEKNSGHATTIMNHHLKRYVALKVMYFGQRFYGFSSEGQMDPTVESEIFK 134

Query: 421  ALKRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDN--RDLNEPFFNIQ 594
            AL+RT+LL+ + K   YSRCGRTDKGVSA GQVI+L LRS  K  D   +   E      
Sbjct: 135  ALERTRLLIGDKKEIQYSRCGRTDKGVSAVGQVIALLLRSKVKDIDEIGKVFGETASQKH 194

Query: 595  DTDEIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIAC 774
               EIDYV+VLN+ LPNDIR++GWCPV  DF +RF CLSREYKY+F  +NL++  M+ A 
Sbjct: 195  SEGEIDYVRVLNRVLPNDIRIIGWCPVPNDFSARFSCLSREYKYFFRGDNLNLLAMESAG 254

Query: 775  KKFIGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVR 954
            KKFIG+HDFRNFCKMDA NVH +RR I+ F+I P  ER+ G  +  +++RG+AFLWHQVR
Sbjct: 255  KKFIGEHDFRNFCKMDAMNVHNYRRNITSFEISPCHERYEGNQLFAIKIRGSAFLWHQVR 314

Query: 955  CMAAVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDA 1134
            CM AVLF+IGQGLESP+VID LLDT +T RKPQY +A E+PLVLH C+FEG+ F CS+DA
Sbjct: 315  CMVAVLFMIGQGLESPDVIDVLLDTVRTPRKPQYPMAPEIPLVLHSCDFEGLQFTCSTDA 374

Query: 1135 AKDMKLHMQQQLQFNLLKSIIYHEATCN-LPEDDDALIPRT---SRKTTHVPLSLRPTEP 1302
             K ++ H++ + +   L++ I+HEA  + LP  +   +       +K +HVPL LRPT  
Sbjct: 375  GKALRTHLENECRLYQLQAAIFHEAIFSCLPLSNGRSLSNNGTCEKKASHVPLMLRPT-- 432

Query: 1303 SYEERKKKF 1329
               ERK K+
Sbjct: 433  ---ERKSKY 438


>emb|CBI29343.3| unnamed protein product [Vitis vinifera]
          Length = 466

 Score =  409 bits (1050), Expect = e-111
 Identities = 221/463 (47%), Positives = 299/463 (64%), Gaps = 35/463 (7%)
 Frame = +1

Query: 46   LKQNPGDMEDELRTAKDLILDLQEQVKSLTARIQELESSKLTEKLQSKDANEEICKLAIA 225
            ++    D + E   A DLI  LQ Q+ SL  R+QELE+       Q    +    +  + 
Sbjct: 1    MRSGTADPQSEGDLALDLISTLQSQLLSLRNRVQELEAENAKLSSQISSCHCHKIREKLD 60

Query: 226  PIARKEQDDFVR-----NNKKKIEAGAIPGS----LKNRTRRLVALKIVYFGQRFYGFAS 378
             I+  +Q D ++       KKK++ G IPG+    + + ++R VALK++YFG RFYGFAS
Sbjct: 61   SISLVQQSDELKPGGDETRKKKLK-GKIPGTNMRTMNHISKRYVALKVMYFGPRFYGFAS 119

Query: 379  EAAMEPTVESEIFSALKRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGD 558
            EA M+PTVESEIF AL++T L + + K   YSRCGRTDKGVS+ GQVI+L+LRS+ K   
Sbjct: 120  EAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKGVSSVGQVIALFLRSNLKEIG 179

Query: 559  NRDLNEPFF-------------------NIQDTDEIDYVKVLNKALPNDIRVVGWCPVSA 681
             R+ N                       ++    EIDY++VLN+ LP DIRV+GWCPV  
Sbjct: 180  AREENSKEVVPEEQYEERREVKDEGGGDSLASEGEIDYMRVLNRVLPKDIRVMGWCPVPI 239

Query: 682  DFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDFRNFCKMDAQNVHTFRRKISK 861
             FH+RF CLSREYKY+F+R NL+I  M+ A KKF+G+HDFRNFCKMDA NVH +RR I  
Sbjct: 240  GFHARFSCLSREYKYFFWRGNLNILAMESAGKKFVGEHDFRNFCKMDAVNVHNYRRHIIS 299

Query: 862  FDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLIGQGLESPNVIDDLLDTSKTV 1041
            F+I P   R+ G  +  ++++G+AFLWHQVRCM AVLF+IGQGLESP+V+D LLDT +T 
Sbjct: 300  FEIAPTNNRYDGNQLWAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERTS 359

Query: 1042 RKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQQQLQFNLLKSIIYHEA---- 1209
            RKPQY +A E+PLVL  CEFEG+ F CSSDA + +++H++ + +   L++ I+HEA    
Sbjct: 360  RKPQYAMAPEIPLVLESCEFEGLKFICSSDAGQALRMHLENECRTYQLQAAIFHEALLSC 419

Query: 1210 --TCNLPEDDDALIPRTSRK-TTHVPLSLRPTEPSYEERKKKF 1329
              + N  E  ++L   T +K   H+ L  RPTEPSYEER+ KF
Sbjct: 420  LPSANSAEKQNSLNNGTIKKEAAHIDLMSRPTEPSYEERRAKF 462


>gb|EOY20130.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
          Length = 445

 Score =  407 bits (1047), Expect = e-111
 Identities = 221/444 (49%), Positives = 303/444 (68%), Gaps = 20/444 (4%)
 Frame = +1

Query: 67   MEDELRT-AKDLILDLQEQVKSLTARIQELES--SKLTEKLQS-------KDANEEICKL 216
            M +E+R  A D++  +Q Q++SL  R++ELE+  +KL+ +L         K  N    K 
Sbjct: 1    MSNEVREIAGDVVAMMQSQLQSLQNRVKELEAENAKLSAQLSKCCCHKTEKMHNGSDVKC 60

Query: 217  AIAPIARKEQDDFVRNNKKKIEAGAIPGS----LKNRTRRLVALKIVYFGQRFYGFASEA 384
              + +A + +++     +KK  +  IPG     + + ++R VALK++YFG+RFYGFASEA
Sbjct: 61   FNSSVASQRKNNGDDKTRKKKASERIPGYNLEIMTHHSKRYVALKVMYFGKRFYGFASEA 120

Query: 385  AMEPTVESEIFSALKRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDNR 564
             M+PTVESEIF AL++T+LL+ + K + YSRCGRTDKGVSA GQVI+LYLRS+ K  D  
Sbjct: 121  QMDPTVESEIFKALEKTRLLVGDKKESLYSRCGRTDKGVSAVGQVIALYLRSNLKEADAN 180

Query: 565  DLN--EPFFNIQDTDEIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFR 738
            D    E     +   EIDYV+VLN+ LPNDIR++GW PVS DF++RF CL+REY Y+F+R
Sbjct: 181  DQTSGELISGTRTEGEIDYVRVLNRVLPNDIRILGWSPVSIDFNARFSCLAREYTYFFWR 240

Query: 739  ENLDINEMKIACKKFIGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQ 918
             NL+  +M+ A KKFIG+HDFRNFCKMDA NVH +RR+++ F+I     R+ G  + V++
Sbjct: 241  GNLNFPDMENAGKKFIGEHDFRNFCKMDAANVHNYRRRVTLFEISSSNMRFEGNQLCVIK 300

Query: 919  VRGTAFLWHQVRCMAAVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCE 1098
            V+G+AFLWHQVRCM AVLF+IGQG+ES  VID LLDT KT RKPQY +A E+PLVL  C+
Sbjct: 301  VKGSAFLWHQVRCMVAVLFMIGQGVESIAVIDALLDTEKTPRKPQYAMAPEIPLVLQSCD 360

Query: 1099 FEGIVFRCSSDAAKDMKLHMQQQLQFNLLKSIIYHEATCN---LPEDDDALIPRTSRK-T 1266
            FE + F CSSD+ + +++H++ + Q   L+S I+HEA  +   L      L   T +K  
Sbjct: 361  FEDVNFICSSDSGQALRIHLENECQAYQLQSAIFHEALLSCLPLANGKSLLNEGTIKKVA 420

Query: 1267 THVPLSLRPTEPSYEERKKKFEEK 1338
            +HVPL  RPTEPSYEER  K   +
Sbjct: 421  SHVPLLSRPTEPSYEERCAKLNSR 444


>ref|XP_004237844.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Solanum
            lycopersicum]
          Length = 420

 Score =  405 bits (1041), Expect = e-110
 Identities = 213/428 (49%), Positives = 294/428 (68%), Gaps = 15/428 (3%)
 Frame = +1

Query: 94   DLILDLQEQVKSLTARIQELES--SKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNN 267
            DL+  LQ ++++L +R++ LES  +KL+ +L +    E            K  D  ++N 
Sbjct: 2    DLVATLQSELETLRSRMKVLESENAKLSAQLSNCSCQES---------KEKGNDSVLKNG 52

Query: 268  ------KKKIEAGAIP-GSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSAL 426
                  KKK +   +  G++ + ++R VALK++YFG RFYGFASEA M+PTVE E+F AL
Sbjct: 53   VLEGHGKKKNKLRDLGYGAMMHHSKRYVALKVMYFGLRFYGFASEAQMDPTVEGELFKAL 112

Query: 427  KRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYKG--GDNRDLNEPFFNIQDT 600
            +RT+L+  + K   YSRCGRTDKGVS+ GQVI+L+LRS+++   GDN+   E     +  
Sbjct: 113  ERTRLIFGDKKELQYSRCGRTDKGVSSVGQVIALFLRSNHRESRGDNKYPGENSIE-ESC 171

Query: 601  DEIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKK 780
             EIDYV+VLN+ LPNDIR++GW P+   F +RF CLSR YKY+F++ NL++  M+ A KK
Sbjct: 172  GEIDYVRVLNRVLPNDIRIMGWSPIPVGFSARFSCLSRVYKYFFWQGNLNLTAMQTAAKK 231

Query: 781  FIGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCM 960
            F+G+HDFRNFCKMDA NVH +RR I  F+IVP  ER     +M+++++G+AFLWHQVRCM
Sbjct: 232  FLGEHDFRNFCKMDADNVHNYRRHIISFEIVPFNERDNDDQLMIMKIKGSAFLWHQVRCM 291

Query: 961  AAVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAK 1140
             AVLFLIGQGLESPNVID LLD  +T RKPQ+ +A E+PLVL  CEFEG+ F CSSD  +
Sbjct: 292  VAVLFLIGQGLESPNVIDLLLDIERTPRKPQFPMAPEIPLVLQSCEFEGLKFICSSDTKQ 351

Query: 1141 DMKLHMQQQLQFNLLKSIIYHEATCN---LPEDDDALIPRTSRK-TTHVPLSLRPTEPSY 1308
             +  H++++ +   L+S IYHEA  N   +  D++     T +K  +H+PL  RPTEPSY
Sbjct: 352  ALNEHLERECRSYKLQSAIYHEALLNSSCIEIDNNISSDHTKKKRASHIPLLSRPTEPSY 411

Query: 1309 EERKKKFE 1332
            EER+KK +
Sbjct: 412  EERRKKLD 419


>ref|XP_004496407.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X1 [Cicer
            arietinum]
          Length = 428

 Score =  404 bits (1038), Expect = e-110
 Identities = 207/426 (48%), Positives = 288/426 (67%), Gaps = 8/426 (1%)
 Frame = +1

Query: 73   DELRTAKDLILDLQEQVKSLTARIQELESSKLTEKLQSKDANEEICKLAIAPIARKEQDD 252
            D + T +  + +L+ +  +L +R+ +   SK+ +KL   D      K A           
Sbjct: 10   DYVTTLQARVKELEAENANLLSRLADCHCSKIEKKLYGHDGKATEPKKAN---------- 59

Query: 253  FVRNNKKKIEA--GAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSAL 426
              + +K+KIE   G     + N ++R VALK++YFG+RFYGFASEA M+PTVESEIF AL
Sbjct: 60   --KKSKEKIEKKPGYNTRFMSNHSKRYVALKVMYFGKRFYGFASEAQMQPTVESEIFQAL 117

Query: 427  KRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYK--GGDNRDLNEPFFNIQDT 600
            +  +LL+ + K + YSRCGRTDKGVS+ GQVI+L+LRS  K  G +N    +     Q  
Sbjct: 118  EEARLLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSRLKISGVNNGSSGDIVLEEQHE 177

Query: 601  DEIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKK 780
             EIDYV+VLN+ LPNDIR++GWCPV  DFH+RF CLSREYKY+F++ENL+I  M+ A  K
Sbjct: 178  GEIDYVRVLNRVLPNDIRILGWCPVPVDFHARFSCLSREYKYFFWKENLNILAMESAGTK 237

Query: 781  FIGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCM 960
            F+G+HDFRNFCKMDA NVH + R+I+ F I P    + G  +  ++++G+AFLWHQVRCM
Sbjct: 238  FLGEHDFRNFCKMDAANVHNYMRRITMFKISPTDVSYDGNQLWAIKIKGSAFLWHQVRCM 297

Query: 961  AAVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAK 1140
             AVLFL+G+GLESP++ D LLDT++  RKPQY +ASE+PLVL  CEF+ + F CSS+A +
Sbjct: 298  VAVLFLVGKGLESPDITDLLLDTNRIPRKPQYTMASEVPLVLQSCEFKDVKFMCSSEAGE 357

Query: 1141 DMKLHMQQQLQFNLLKSIIYHEATCN-LPEDDDALIP---RTSRKTTHVPLSLRPTEPSY 1308
             +  H+  + +   L++ I+HEA  N +P   D ++P    + +K +H+PL  RPTEPSY
Sbjct: 358  ALHSHLVNECKIYQLQAAIFHEAILNSVPPLHDQILPAVRESKKKASHIPLMSRPTEPSY 417

Query: 1309 EERKKK 1326
            EER+ K
Sbjct: 418  EERRAK 423


>ref|XP_006589473.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X5
            [Glycine max]
          Length = 406

 Score =  403 bits (1036), Expect = e-109
 Identities = 201/370 (54%), Positives = 267/370 (72%), Gaps = 9/370 (2%)
 Frame = +1

Query: 259  RNNKKKIEAGAIPGS----LKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSAL 426
            R +++KIE   +PG     + + +RR VALK++YFG+RFYGFASEA MEPTVESE+F A 
Sbjct: 39   RKSEEKIEK--MPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAF 96

Query: 427  KRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDNRDLNEPF-FNIQDTD 603
            ++T+LL+   K + YSRCGRTDKGVS+ GQVI+L+LRS+ K  +  + N     + Q   
Sbjct: 97   EKTRLLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEG 156

Query: 604  EIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKF 783
            EIDYV+VLN+ LPNDIR++GWCP   DFH+RF CLSREYKY+F++ENL+I  M+ A  K 
Sbjct: 157  EIDYVRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKL 216

Query: 784  IGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMA 963
            +G+HDFRNFCKMDA NVH +RR+I  F+I P   R+    + V+++RG+AFLWHQVRCM 
Sbjct: 217  VGEHDFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMV 276

Query: 964  AVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKD 1143
             VLF++G+GLESPNVID LLDT++ +RKPQY +ASE+PLVL  CEF+ I F CSS+A + 
Sbjct: 277  VVLFMVGKGLESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEA 336

Query: 1144 MKLHMQQQLQFNLLKSIIYHEATCN---LPEDDDAL-IPRTSRKTTHVPLSLRPTEPSYE 1311
            + +H+  + Q   L++ I+HEA  N   L  D   L    + +K +HVPL  RPTEPSYE
Sbjct: 337  LHVHLVNECQIYQLQAAIFHEALLNCVPLSNDQSLLHFQGSKKKVSHVPLMSRPTEPSYE 396

Query: 1312 ERKKKFEEKA 1341
            ER+ K    A
Sbjct: 397  ERRAKLNTVA 406


>ref|XP_004496408.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X2 [Cicer
            arietinum]
          Length = 427

 Score =  402 bits (1032), Expect = e-109
 Identities = 206/425 (48%), Positives = 287/425 (67%), Gaps = 7/425 (1%)
 Frame = +1

Query: 73   DELRTAKDLILDLQEQVKSLTARIQELESSKLTEKLQSKDANEEICKLAIAPIARKEQDD 252
            D + T +  + +L+ +  +L +R+ +   SK+ +KL   D      K A           
Sbjct: 10   DYVTTLQARVKELEAENANLLSRLADCHCSKIEKKLYGHDGKATEPKKAN---------- 59

Query: 253  FVRNNKKKIEA--GAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSAL 426
              + +K+KIE   G     + N ++R VALK++YFG+RFYGFASEA M+PTVESEIF AL
Sbjct: 60   --KKSKEKIEKKPGYNTRFMSNHSKRYVALKVMYFGKRFYGFASEAQMQPTVESEIFQAL 117

Query: 427  KRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYK-GGDNRDLNEPFFNIQDTD 603
            +  +LL+ + K + YSRCGRTDKGVS+ GQVI+L+LRS  K  G N   +      +   
Sbjct: 118  EEARLLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSRLKISGVNNGSSGDIVLEEQHG 177

Query: 604  EIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKF 783
            EIDYV+VLN+ LPNDIR++GWCPV  DFH+RF CLSREYKY+F++ENL+I  M+ A  KF
Sbjct: 178  EIDYVRVLNRVLPNDIRILGWCPVPVDFHARFSCLSREYKYFFWKENLNILAMESAGTKF 237

Query: 784  IGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMA 963
            +G+HDFRNFCKMDA NVH + R+I+ F I P    + G  +  ++++G+AFLWHQVRCM 
Sbjct: 238  LGEHDFRNFCKMDAANVHNYMRRITMFKISPTDVSYDGNQLWAIKIKGSAFLWHQVRCMV 297

Query: 964  AVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKD 1143
            AVLFL+G+GLESP++ D LLDT++  RKPQY +ASE+PLVL  CEF+ + F CSS+A + 
Sbjct: 298  AVLFLVGKGLESPDITDLLLDTNRIPRKPQYTMASEVPLVLQSCEFKDVKFMCSSEAGEA 357

Query: 1144 MKLHMQQQLQFNLLKSIIYHEATCN-LPEDDDALIP---RTSRKTTHVPLSLRPTEPSYE 1311
            +  H+  + +   L++ I+HEA  N +P   D ++P    + +K +H+PL  RPTEPSYE
Sbjct: 358  LHSHLVNECKIYQLQAAIFHEAILNSVPPLHDQILPAVRESKKKASHIPLMSRPTEPSYE 417

Query: 1312 ERKKK 1326
            ER+ K
Sbjct: 418  ERRAK 422


>ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis sativus]
          Length = 455

 Score =  400 bits (1027), Expect = e-108
 Identities = 212/417 (50%), Positives = 281/417 (67%), Gaps = 6/417 (1%)
 Frame = +1

Query: 100  ILDLQEQVKSLTARIQELE--SSKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNNKK 273
            I  LQ Q++ L  R++ELE  +SKL+ +L S   +E          + ++  +     KK
Sbjct: 34   IASLQSQLRLLQDRVKELEEKNSKLSSRLASCCCSERRMNFGDRSRSIEKSKESGTTKKK 93

Query: 274  KIE--AGAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKLLL 447
             +E   G     L + ++R +ALK++YFGQRFYGFASEA MEPTVESEIF AL++ +LL+
Sbjct: 94   SVEKTTGYNTRILDHCSKRYIALKVMYFGQRFYGFASEAQMEPTVESEIFRALEKARLLV 153

Query: 448  EEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDNRDLNEPFFNIQDTDEIDYVKVL 627
               K +CYSRCGRTDKGVS+ GQVI+LYLRS+ K   N + +      Q   EIDYV+V+
Sbjct: 154  GGRKESCYSRCGRTDKGVSSVGQVIALYLRSNLKDPPNGENSCHNGEEQHDGEIDYVRVI 213

Query: 628  NKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDFRN 807
            NK LPNDIRV+GWC V   F +RF CL R+YKY+F+  NL+I+ M+ A KKF+G+HDFRN
Sbjct: 214  NKVLPNDIRVLGWCSVPVGFSARFSCLRRKYKYFFWGANLNISAMERAGKKFVGEHDFRN 273

Query: 808  FCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLIGQ 987
            FCKMDA NVH +RR+I  FDI P   R  G  +    + G+AFLWHQVRCM AV+F++GQ
Sbjct: 274  FCKMDAANVHNYRRRIMSFDISPCDVRTEGNPLWAFNIEGSAFLWHQVRCMVAVVFMVGQ 333

Query: 988  GLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQQQ 1167
             LE P+VID LLD  +T RKPQY +ASE  LVLH CEFEG+ F CSSDA + ++LH+  +
Sbjct: 334  DLEDPDVIDILLDPLRTPRKPQYVMASENSLVLHSCEFEGVKFWCSSDAGEALQLHLSNE 393

Query: 1168 LQFNLLKSIIYHEATCN-LPEDDDALIPR-TSRKTTHVPLSLRPTEPSYEERKKKFE 1332
            ++   L++ I+ EA  + LP D  +   R   +K +HV L  RPTEPSYEER+ K +
Sbjct: 394  IRTYKLQAAIFKEALLSCLPNDGSSSDNRKLKKKNSHVALLSRPTEPSYEERRAKLD 450


>ref|XP_004984202.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X1
            [Setaria italica] gi|514819007|ref|XP_004984203.1|
            PREDICTED: tRNA pseudouridine(38/39) synthase-like
            isoform X2 [Setaria italica]
          Length = 468

 Score =  398 bits (1023), Expect = e-108
 Identities = 216/459 (47%), Positives = 281/459 (61%), Gaps = 49/459 (10%)
 Frame = +1

Query: 109  LQEQVKSLTARIQELES-----SKLTEKLQSKDANEEICKLAIAPIARKEQDDFVRNNKK 273
            L+ +V +L  R+QELE      +K+          E +  +A+A       D   R+N+K
Sbjct: 12   LRAEVAALRMRVQELERENQRLAKVASSCTCGFKEENVGSVAVASSCLNGSDPEARHNEK 71

Query: 274  ------------------------------KIEAGAIPGSLKNRTRR------------- 324
                                            E   +P     RT+R             
Sbjct: 72   FHQSSALEKDLSPPFDHTVISTENEIQCNRNAEGNGLPDDSSKRTKRTGHQVAILSHCPK 131

Query: 325  -LVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKLLLEEPKSACYSRCGRTDKGV 501
             LVALK++YFGQRFYGF+SE  MEPTVESEIF AL+R KL++   K +CYSRCGRTDKGV
Sbjct: 132  RLVALKVMYFGQRFYGFSSEGNMEPTVESEIFKALERAKLMVASRKESCYSRCGRTDKGV 191

Query: 502  SAFGQVISLYLRSHYKGGDNRDLNEPFFNIQDTDEIDYVKVLNKALPNDIRVVGWCPVSA 681
            SA GQVISLYLRS+ K     D+ E    + +  EIDYVKVLN+ LP DIRV+GWCPV A
Sbjct: 192  SASGQVISLYLRSNIK-----DVGEDM--LDERSEIDYVKVLNRILPRDIRVLGWCPVPA 244

Query: 682  DFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDHDFRNFCKMDAQNVHTFRRKISK 861
            DFH+RF CL REYKY F+R +LDI EM+ A  KFIG+HDFRNFCKMDA NV  ++R+I++
Sbjct: 245  DFHARFTCLGREYKYLFWRGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYKRRITE 304

Query: 862  FDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLFLIGQGLESPNVIDDLLDTSKTV 1041
            F I    +R    ++  + ++GTAFLWHQVRCM AVLFLIGQGLESP+V+D LLD +KT 
Sbjct: 305  FTISSCDKRSYNDELCSMTIKGTAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDITKTP 364

Query: 1042 RKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLHMQQQLQFNLLKSIIYHEATCNL 1221
            RKPQYK+A+E+PL+L  C+F+   F CSSD ++ +  H+  +    +L++ I+HEA   L
Sbjct: 365  RKPQYKMAAELPLILRSCQFDKADFMCSSDVSQSLTEHLNDEYHHYMLQAEIFHEALSCL 424

Query: 1222 PEDDDALIPRTSRKTTHVPLSLRPTEPSYEERKKKFEEK 1338
            P  +   +    +K  H+PL  R TEPSYEER  K + K
Sbjct: 425  PCPESNPLETLQKKRNHIPLLSRQTEPSYEERIAKVKTK 463


>ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
            gi|241921636|gb|EER94780.1| hypothetical protein
            SORBIDRAFT_01g033960 [Sorghum bicolor]
          Length = 459

 Score =  398 bits (1022), Expect = e-108
 Identities = 201/361 (55%), Positives = 256/361 (70%), Gaps = 2/361 (0%)
 Frame = +1

Query: 262  NNKKKIEAGAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKL 441
            ++K+    G   G+L +  +RLVALK++YFGQRFYGF+SE   EPTVESEIF AL+R KL
Sbjct: 102  SSKRTKRTGRHVGNLSHCPKRLVALKVMYFGQRFYGFSSEGNTEPTVESEIFKALERAKL 161

Query: 442  LLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYK--GGDNRDLNEPFFNIQDTDEIDY 615
            ++   K +CYSRCGRTDKGVSA GQVISLYLRS+ K  GGD  D         +  EIDY
Sbjct: 162  MVGSRKESCYSRCGRTDKGVSATGQVISLYLRSNIKDVGGDMLD---------ERSEIDY 212

Query: 616  VKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDH 795
            VKVLN+ LP DIRV+GWCPV ADFH+RF CLSREYKY F++ +LDI EM+ A  KFIG+H
Sbjct: 213  VKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLFWKGDLDILEMQKAASKFIGEH 272

Query: 796  DFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLF 975
            DFRNFCKMDA NV  +RR+I++F I     R    ++  + ++G+AFLWHQVRCM AVLF
Sbjct: 273  DFRNFCKMDAANVSNYRRRITEFTISACDRRSNNDELCSMMIKGSAFLWHQVRCMVAVLF 332

Query: 976  LIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLH 1155
            LIGQGLESP+V+D LLD +KT RKPQYK+A E+PL+L  C F+   F CSSDA++ +  H
Sbjct: 333  LIGQGLESPSVVDSLLDITKTPRKPQYKMAPELPLILRSCLFDKANFMCSSDASQSLTEH 392

Query: 1156 MQQQLQFNLLKSIIYHEATCNLPEDDDALIPRTSRKTTHVPLSLRPTEPSYEERKKKFEE 1335
               +   ++L++ I+H A+  LP  +   +    +K  H+PL  R TEPSYEER  K + 
Sbjct: 393  FNDEYHHHMLQAEIFHIASSCLPFPEPNSLETLQKKRNHIPLLSRQTEPSYEERISKVKT 452

Query: 1336 K 1338
            K
Sbjct: 453  K 453


>gb|EOY20131.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 478

 Score =  396 bits (1017), Expect = e-107
 Identities = 223/477 (46%), Positives = 306/477 (64%), Gaps = 53/477 (11%)
 Frame = +1

Query: 67   MEDELRT-AKDLILDLQEQVKSLTARIQELES--SKLTEKLQS-------KDANEEICKL 216
            M +E+R  A D++  +Q Q++SL  R++ELE+  +KL+ +L         K  N    K 
Sbjct: 1    MSNEVREIAGDVVAMMQSQLQSLQNRVKELEAENAKLSAQLSKCCCHKTEKMHNGSDVKC 60

Query: 217  AIAPIARKEQDDFVRNNKKKIEAGAIPGS----LKNRTRRLVALKIVYFGQRFYGFASEA 384
              + +A + +++     +KK  +  IPG     + + ++R VALK++YFG+RFYGFASEA
Sbjct: 61   FNSSVASQRKNNGDDKTRKKKASERIPGYNLEIMTHHSKRYVALKVMYFGKRFYGFASEA 120

Query: 385  AMEPTVESEIFSALKRTKLLLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYKGGDNR 564
             M+PTVESEIF AL++T+LL+ + K + YSRCGRTDKGVSA GQVI+LYLRS+ K  D  
Sbjct: 121  QMDPTVESEIFKALEKTRLLVGDKKESLYSRCGRTDKGVSAVGQVIALYLRSNLKEADAN 180

Query: 565  DLN--EPFFNIQDTDEIDYVKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFR 738
            D    E     +   EIDYV+VLN+ LPNDIR++GW PVS DF++RF CL+REY Y+F+R
Sbjct: 181  DQTSGELISGTRTEGEIDYVRVLNRVLPNDIRILGWSPVSIDFNARFSCLAREYTYFFWR 240

Query: 739  ENLDINEMKIACKKFIGDHDFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQ 918
             NL+  +M+ A KKFIG+HDFRNFCKMDA NVH +RR+++ F+I     R+ G  + V++
Sbjct: 241  GNLNFPDMENAGKKFIGEHDFRNFCKMDAANVHNYRRRVTLFEISSSNMRFEGNQLCVIK 300

Query: 919  VRGTAFLWHQVRCMAAVLFLIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCE 1098
            V+G+AFLWHQVRCM AVLF+IGQG+ES  VID LLDT KT RKPQY +A E+PLVL  C+
Sbjct: 301  VKGSAFLWHQVRCMVAVLFMIGQGVESIAVIDALLDTEKTPRKPQYAMAPEIPLVLQSCD 360

Query: 1099 FEGIVFRCSSDAAKDMKLHMQQQLQFNLLKSIIYHEATCN-LPEDDDA---LIPRTSRK- 1263
            FE + F CSSD+ + +++H++ + Q   L+S I+HEA  + LP  + A    +P  S K 
Sbjct: 361  FEDVNFICSSDSGQALRIHLENECQAYQLQSAIFHEALLSCLPLANGAETKFLPYISVKV 420

Query: 1264 --------------------------------TTHVPLSLRPTEPSYEERKKKFEEK 1338
                                             +HVPL  RPTEPSYEER  K   +
Sbjct: 421  LLFCLSVLICIAERTLTFSGKSLLNEGTIKKVASHVPLLSRPTEPSYEERCAKLNSR 477


>ref|NP_001145731.1| pseudouridylate synthase [Zea mays] gi|219884209|gb|ACL52479.1|
            unknown [Zea mays] gi|414867029|tpg|DAA45586.1| TPA:
            pseudouridylate synthase [Zea mays]
          Length = 486

 Score =  393 bits (1010), Expect = e-106
 Identities = 200/361 (55%), Positives = 254/361 (70%), Gaps = 2/361 (0%)
 Frame = +1

Query: 262  NNKKKIEAGAIPGSLKNRTRRLVALKIVYFGQRFYGFASEAAMEPTVESEIFSALKRTKL 441
            ++K     G   G L +  +RLVALK++YFGQRFYGF+SE  +EPTVESEIF AL+R KL
Sbjct: 129  SSKHTKRTGRKVGILSHCPKRLVALKVMYFGQRFYGFSSEGNIEPTVESEIFKALERAKL 188

Query: 442  LLEEPKSACYSRCGRTDKGVSAFGQVISLYLRSHYK--GGDNRDLNEPFFNIQDTDEIDY 615
            ++   K +CYSRCGRTDKGVSA GQVISLYLRS+ K  GGD  D         +  EIDY
Sbjct: 189  MVANRKESCYSRCGRTDKGVSATGQVISLYLRSNIKDVGGDMLD---------ERSEIDY 239

Query: 616  VKVLNKALPNDIRVVGWCPVSADFHSRFGCLSREYKYYFFRENLDINEMKIACKKFIGDH 795
            VKVLN+ LP DIRV+GWCPV ADFH+RF CLSREYKY F++ +LDI EM+ A  KFIG+H
Sbjct: 240  VKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLFWKGDLDILEMQKAASKFIGEH 299

Query: 796  DFRNFCKMDAQNVHTFRRKISKFDIVPLPERWAGKDVMVLQVRGTAFLWHQVRCMAAVLF 975
            DFRNFCKMDA NV  +RR I++F I     R    ++  + ++G+AFLWHQVRCM AVLF
Sbjct: 300  DFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCMVAVLF 359

Query: 976  LIGQGLESPNVIDDLLDTSKTVRKPQYKIASEMPLVLHLCEFEGIVFRCSSDAAKDMKLH 1155
            LIGQGLESP+V+D LLD  KT RKPQYK+A E+PL+L  C F+   F CS+DA++ +  H
Sbjct: 360  LIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFDKANFMCSADASRSLTEH 419

Query: 1156 MQQQLQFNLLKSIIYHEATCNLPEDDDALIPRTSRKTTHVPLSLRPTEPSYEERKKKFEE 1335
            +  + + ++L++ I+H A+  LP  +        +K  H+PL  R TEPSYEER  K + 
Sbjct: 420  LNDEYRHHMLQAEIFHIASSCLPFPEPNSSETPQKKRNHIPLLSRETEPSYEERISKVKA 479

Query: 1336 K 1338
            K
Sbjct: 480  K 480