BLASTX nr result

ID: Ephedra28_contig00018254 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00018254
         (369 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK36040.1| unknown [Lotus japonicus]                               60   3e-07
gb|ABK24071.1| unknown [Picea sitchensis]                              59   5e-07
gb|ABK23378.1| unknown [Picea sitchensis]                              58   1e-06
gb|EMJ19522.1| hypothetical protein PRUPE_ppa008442mg [Prunus pe...    57   3e-06

>gb|AFK36040.1| unknown [Lotus japonicus]
          Length = 324

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
 Frame = +3

Query: 183 KRARRTVMKPM---NALAVTRGGLSP-------VRPPQTNPLMPGIEDLDTTNMLLAQRI 332
           K  RRT  KP+   NA + TR  LS        +     +P +P +E+LDTTNMLL QRI
Sbjct: 35  KATRRTTTKPLFTVNASSTTRQTLSSNWDLPNDLSASTASPWLPKLEELDTTNMLLRQRI 94

Query: 333 IFLGSQVDDLSA 368
           +FLGSQVDD++A
Sbjct: 95  VFLGSQVDDMTA 106


>gb|ABK24071.1| unknown [Picea sitchensis]
          Length = 341

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
 Frame = +3

Query: 186 RARRTVMKPMNALAVTRGGLSPVRPP---QTNPLMPGIEDLDTTNMLLAQRIIFLGSQVD 356
           R R   +KP+ AL+ +RG LS         ++  MP  EDLDTT+MLL QRI+FLGSQVD
Sbjct: 58  RQRMQAVKPIGALSSSRGSLSASLDSVGTSSSLWMPRPEDLDTTSMLLRQRIVFLGSQVD 117

Query: 357 DLSA 368
           D+SA
Sbjct: 118 DVSA 121


>gb|ABK23378.1| unknown [Picea sitchensis]
          Length = 341

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
 Frame = +3

Query: 186 RARRTVMKPMNALAVTRGGLSPVRPP---QTNPLMPGIEDLDTTNMLLAQRIIFLGSQVD 356
           R R   +KP  AL+ +RG LS         ++  MP  EDLDTT+MLL QRI+FLGSQVD
Sbjct: 58  RQRMQAVKPNGALSSSRGSLSASLDSVGTSSSLWMPRPEDLDTTSMLLRQRIVFLGSQVD 117

Query: 357 DLSA 368
           D+SA
Sbjct: 118 DVSA 121


>gb|EMJ19522.1| hypothetical protein PRUPE_ppa008442mg [Prunus persica]
          Length = 331

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
 Frame = +3

Query: 144 KSGG---NSVSGAWRKKRARRTVMKPMNALAVTRGGLSPVRPPQT----NPLMPGIEDLD 302
           KS G   +S S + R++     V+K + + + TR  LS     QT    +P +P  E+LD
Sbjct: 30  KSSGLNSSSTSISCRRRSKGVCVIKALKSSSPTRQTLSSNWDFQTATTSSPRLPRFEELD 89

Query: 303 TTNMLLAQRIIFLGSQVDDLSA 368
           TTNMLL QRIIFLGSQVDD++A
Sbjct: 90  TTNMLLRQRIIFLGSQVDDMTA 111


Top