BLASTX nr result
ID: Ephedra28_contig00018183
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00018183
(674 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE76485.1| unknown [Picea sitchensis] 270 3e-70
ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l... 244 2e-62
ref|XP_004304353.1| PREDICTED: exosome complex component RRP43-l... 243 5e-62
ref|XP_006381009.1| hypothetical protein POPTR_0006s04970g [Popu... 241 1e-61
ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ... 239 4e-61
emb|CBI29839.3| unnamed protein product [Vitis vinifera] 237 3e-60
ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-l... 233 5e-59
gb|EOY09233.1| 3'-5'-exoribonuclease family protein [Theobroma c... 232 9e-59
ref|XP_004241263.1| PREDICTED: exosome complex component RRP43-l... 230 3e-58
gb|ESW05464.1| hypothetical protein PHAVU_011G181200g [Phaseolus... 230 3e-58
gb|EMJ03572.1| hypothetical protein PRUPE_ppa009278mg [Prunus pe... 229 4e-58
ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-l... 229 8e-58
ref|XP_003531860.1| PREDICTED: exosome complex component RRP43-l... 229 8e-58
ref|NP_001275445.1| 3'-5'-exoribonuclease/RNA binding-like prote... 226 4e-57
ref|XP_006489986.1| PREDICTED: exosome complex component RRP43-l... 226 5e-57
ref|XP_006421389.1| hypothetical protein CICLE_v10005512mg [Citr... 226 5e-57
ref|XP_002308947.1| 3' exoribonuclease domain 1-containing famil... 226 6e-57
ref|XP_006365748.1| PREDICTED: exosome complex component RRP43 i... 225 1e-56
ref|XP_006373782.1| hypothetical protein POPTR_0016s05590g [Popu... 224 2e-56
ref|XP_004498461.1| PREDICTED: exosome complex component RRP43-l... 223 3e-56
>gb|ADE76485.1| unknown [Picea sitchensis]
Length = 302
Score = 270 bits (690), Expect = 3e-70
Identities = 138/221 (62%), Positives = 168/221 (76%), Gaps = 3/221 (1%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
P+ E+ +EGRI VDFQMPPICSP VRPG+P+D A +ISEQLSNVL+SSG +NL+EL ISK
Sbjct: 80 PAAEALDEGRIAVDFQMPPICSPDVRPGRPVDAAAVISEQLSNVLASSGVINLKELSISK 139
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
G+AAWMAYLDI C+DADG++FD R PAVSMTEEGKVIP+S + +EDG
Sbjct: 140 GQAAWMAYLDIYCLDADGALFDAALLAAIGAFAHLRFPAVSMTEEGKVIPLSGDTVLEDG 199
Query: 362 ---EQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVS 532
+ Q Q + LTL +PFSLTC+LYK ++LADP AEEE + QT ITVVLD SG+LVS
Sbjct: 200 NKEQPKVQEQRQQLTLGKVPFSLTCMLYKKHILADPTAEEESVFQTTITVVLDPSGRLVS 259
Query: 533 FYKPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMD 655
FYKPGGSALAS + CV+ K RVKEL+ IL EAL++M+
Sbjct: 260 FYKPGGSALASTSTIQDCVALTKYRVKELQKILDEALSEME 300
>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
Length = 303
Score = 244 bits (622), Expect = 2e-62
Identities = 119/220 (54%), Positives = 158/220 (71%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
P +ESP+EG I ++F MPPICSP VRPG+P +EA ++S+QLS+ + SSG +NL+EL +
Sbjct: 83 PPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTILSSGMINLKELSLVS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWMAYLDI C+DADGS+FD RIP VS+ EEG+V+ +S+ N
Sbjct: 143 GKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKS 202
Query: 362 E-QTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
E + ++ LTL ++PFSLTC+L+KNY+LADP AEEE I++T +TVVLDSSG+LVS Y
Sbjct: 203 EKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSGQLVSLY 262
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
KPGG LA V C++ + RVKELK IL EA++ M+V
Sbjct: 263 KPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEV 302
>ref|XP_004304353.1| PREDICTED: exosome complex component RRP43-like isoform 2 [Fragaria
vesca subsp. vesca]
Length = 300
Score = 243 bits (619), Expect = 5e-62
Identities = 118/219 (53%), Positives = 159/219 (72%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS+E P+EGRI ++F MPPICSP VRPG+P + A ++S+QLS+ +SSSG +N++EL +
Sbjct: 83 PSQELPDEGRIAIEFHMPPICSPIVRPGRPAEAAPVVSKQLSDTISSSGMINVKELSLIS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWM YLDI C+DADG++FD +IP VSM EGKV+ +S+ N E G
Sbjct: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSHLQIPVVSMNNEGKVVVMSEEN--EGG 200
Query: 362 EQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFYK 541
++ +++ LTL +IPFSLTC+LYKN++LADP AEEE I++T +TVVLDSSG+LVS YK
Sbjct: 201 KEPVNKEKRKLTLCSIPFSLTCILYKNFILADPTAEEESIMETLVTVVLDSSGQLVSLYK 260
Query: 542 PGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
PGG LA + CV+ + RV+EL+ IL EA A M+V
Sbjct: 261 PGGPVLAYTSAIQDCVALTRQRVRELQMILDEASAGMEV 299
>ref|XP_006381009.1| hypothetical protein POPTR_0006s04970g [Populus trichocarpa]
gi|550335486|gb|ERP58806.1| hypothetical protein
POPTR_0006s04970g [Populus trichocarpa]
Length = 303
Score = 241 bits (615), Expect = 1e-61
Identities = 117/220 (53%), Positives = 160/220 (72%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESPEEG I +DF MPPICSP VRPG+P + A +IS+QLS+ +SSSG +NL+EL +
Sbjct: 83 PSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMINLKELSLVS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPIS-DNNNVED 358
GKAAWMAYLDI C+DADG++FD +IP VS+ ++GK++ +S +++ +
Sbjct: 143 GKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHLQIPIVSLNDDGKIVLVSEEDDGTKL 202
Query: 359 GEQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
E+ +++ LTL +IPFSLTC+L+KNY+LADP AEEE I++T +TVVLDSS +LVSFY
Sbjct: 203 EEEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSSRLVSFY 262
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
KPGG LA V CV+ + RVKEL+ IL E ++ M++
Sbjct: 263 KPGGPVLAQTSAVQDCVALTRQRVKELQDILDETISGMEI 302
>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
gi|223528261|gb|EEF30313.1| exosome complex exonuclease
rrp43, putative [Ricinus communis]
Length = 303
Score = 239 bits (611), Expect = 4e-61
Identities = 120/220 (54%), Positives = 157/220 (71%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESP+EG I +DF MPPICSP VRPG+P + A ++S+QLS+ + SS ++L+EL +
Sbjct: 83 PSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLSDTIMSSAMIDLKELSLVS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWMAYLDI C+DADGS+FD +IP VS+ ++GKV+ +SD N
Sbjct: 143 GKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIPIVSLNDDGKVVVVSDENEGGKR 202
Query: 362 EQTCQSQEK-CLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
E+ ++EK LTL ++PFSLTCVL+KNY+LADP AEEE I++T +TVVLDSS +LVSFY
Sbjct: 203 EKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEEESIMETLVTVVLDSSARLVSFY 262
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
KPGG LA V CV+ + RVKEL+ IL EAL+ M +
Sbjct: 263 KPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGMQI 302
>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 237 bits (604), Expect = 3e-60
Identities = 120/228 (52%), Positives = 158/228 (69%), Gaps = 9/228 (3%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSN--------VLSSSGFVN 157
P +ESP+EG I ++F MPPICSP VRPG+P +EA ++S+QLS+ V S SG +N
Sbjct: 83 PPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTILRHVNVVTSFSGMIN 142
Query: 158 LRELLISKGKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPIS 337
L+EL + GKAAWMAYLDI C+DADGS+FD RIP VS+ EEG+V+ +S
Sbjct: 143 LKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVS 202
Query: 338 DNNNVEDGE-QTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDS 514
+ N E + ++ LTL ++PFSLTC+L+KNY+LADP AEEE I++T +TVVLDS
Sbjct: 203 EENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDS 262
Query: 515 SGKLVSFYKPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
SG+LVS YKPGG LA V C++ + RVKELK IL EA++ M+V
Sbjct: 263 SGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEV 310
>ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
gi|449503802|ref|XP_004162184.1| PREDICTED: exosome
complex component RRP43-like [Cucumis sativus]
Length = 304
Score = 233 bits (593), Expect = 5e-59
Identities = 115/220 (52%), Positives = 158/220 (71%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESP+EG I +DF MPP+CSP VRPG+P + A +IS+QLS+ +SSSG ++LREL + K
Sbjct: 84 PSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVK 143
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWMAYLDI C+DADGS+FD +IP V++ ++GKV+ + + E+
Sbjct: 144 GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEGGENF 203
Query: 362 E-QTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
E + + + L L +IPFSLTC+L+K Y+LADP AEEE +++T +TVVLDSSG+LVSFY
Sbjct: 204 EKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFY 263
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
KPGGS LA V C++ + R KEL+ IL EA++ M++
Sbjct: 264 KPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGMEI 303
>gb|EOY09233.1| 3'-5'-exoribonuclease family protein [Theobroma cacao]
Length = 302
Score = 232 bits (591), Expect = 9e-59
Identities = 108/219 (49%), Positives = 154/219 (70%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS E+P+EG + +DF MPPICSP VRPG+P + A ++S+QLS+ + SSG ++L+EL +
Sbjct: 83 PSTETPDEGCVAIDFHMPPICSPIVRPGRPAEAAPVVSKQLSDTILSSGMISLKELCLVS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWMAYLDI C+DADG++FD IP VS+ ++GK++ +S+
Sbjct: 143 GKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEIPVVSLNDDGKIVLLSEEQEGMSE 202
Query: 362 EQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFYK 541
+ +++ LTL +IPFSLTC+L+KNY+LADP AEEE I++T +T+VLDSS +LVS YK
Sbjct: 203 REPVNKEKRKLTLCSIPFSLTCILHKNYILADPTAEEESIMETLVTIVLDSSSQLVSLYK 262
Query: 542 PGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
PGG LA + C++ + RVKEL+ IL EA++ M+V
Sbjct: 263 PGGPVLAYTSAIQDCIAITRQRVKELQKILEEAISVMEV 301
>ref|XP_004241263.1| PREDICTED: exosome complex component RRP43-like [Solanum
lycopersicum]
Length = 303
Score = 230 bits (587), Expect = 3e-58
Identities = 114/220 (51%), Positives = 158/220 (71%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
P+ E P+EG I ++F MPPICSP VRPG+P + A +IS+QLS+ + SSG ++L+EL +
Sbjct: 83 PTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVISKQLSDTILSSGMIDLKELCLVG 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPIS-DNNNVED 358
GKAAWMAYLDI C+DADGS+FD IP VS+ E+G+++ +S DNN ++
Sbjct: 143 GKAAWMAYLDIYCLDADGSLFDAALLSAVAAFSHLNIPVVSLNEDGRIVLVSEDNNQLKL 202
Query: 359 GEQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
+Q ++++ L L + PFSLTC+L+KNY+LADP AEEE I++T +TVVLDSS +LVS Y
Sbjct: 203 EKQPVNTEKRKLKLNSPPFSLTCLLHKNYILADPTAEEESIMETAVTVVLDSSYQLVSLY 262
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
KPGG A V+ CV+ AK RVKEL+ +L EA++ M+V
Sbjct: 263 KPGGPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDMEV 302
>gb|ESW05464.1| hypothetical protein PHAVU_011G181200g [Phaseolus vulgaris]
Length = 301
Score = 230 bits (586), Expect = 3e-58
Identities = 108/219 (49%), Positives = 157/219 (71%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESP+EG + VDF MPPICSP VRPG+P + + ++S+QLS+ +SSS ++L+EL +
Sbjct: 83 PSLESPDEGCLAVDFFMPPICSPIVRPGRPAEASPVVSKQLSDTISSSKMIDLKELSLVS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWM YLDI C+DADGS++D +IPAV+M ++GK++ +SD + +
Sbjct: 143 GKAAWMTYLDIYCLDADGSLYDAALLSAVAALSHLQIPAVAMNDDGKIVLVSDEDGQKRA 202
Query: 362 EQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFYK 541
++ +++ LTL +IPFSLTC+L+KNY+LADP AEEE I++T +T+VLD+SG+L+S YK
Sbjct: 203 QEPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIVETHLTIVLDTSGQLISLYK 262
Query: 542 PGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
PGG LA + CV+ + RVKELK +L + + M+V
Sbjct: 263 PGGQVLAYTSAIQDCVALTRQRVKELKSLLDKENSAMEV 301
>gb|EMJ03572.1| hypothetical protein PRUPE_ppa009278mg [Prunus persica]
Length = 299
Score = 229 bits (585), Expect = 4e-58
Identities = 112/219 (51%), Positives = 155/219 (70%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS+ESP+EG I +DF MPPICSP VRPG+P + A ++S+QLS+ +SS G +NL+EL +
Sbjct: 83 PSKESPDEGCIAIDFHMPPICSPTVRPGRPAEAAPVVSKQLSDTISSCGMINLKELSLIS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
KAAWMAYLDI C+DADG++FD +IP VSM ++GKV+ +S ++ G
Sbjct: 143 RKAAWMAYLDIYCLDADGALFDAALLSAVAAFSHLQIPVVSMNDDGKVVVLSGDHG---G 199
Query: 362 EQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFYK 541
++ ++ LTL +IPFSLTC+L+KNY+LADP AEEE +++T +TVVLDSSG+LVS YK
Sbjct: 200 KEPVNKGKRKLTLSSIPFSLTCLLHKNYILADPTAEEESVMETLVTVVLDSSGQLVSLYK 259
Query: 542 PGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
PGG LA + CV+ + R +EL+ IL E + M+V
Sbjct: 260 PGGPVLAYTSAIQDCVALTRQRARELQTILDEVTSSMEV 298
>ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-like isoform X1 [Glycine
max] gi|571509874|ref|XP_006596185.1| PREDICTED: exosome
complex component RRP43-like isoform X4 [Glycine max]
Length = 299
Score = 229 bits (583), Expect = 8e-58
Identities = 111/219 (50%), Positives = 156/219 (71%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESP+EG + +DF MPPICSP VRPG+P + + ++S+QLS+ +SSS ++L+EL +
Sbjct: 83 PSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVG 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWMAYLDI C+DADG++FD +IPAV+M ++GK++ +S EDG
Sbjct: 143 GKAAWMAYLDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSG----EDG 198
Query: 362 EQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFYK 541
++ +++ LTL +IPFSLTC+L+KNY+LADP AEEE I++T +T+VLD+SG+L+S YK
Sbjct: 199 QKPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYK 258
Query: 542 PGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
PGG ALA + CV RVKELK L + + M+V
Sbjct: 259 PGGPALAYTSAIQDCVGLTGQRVKELKSYLDKENSAMEV 297
>ref|XP_003531860.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 302
Score = 229 bits (583), Expect = 8e-58
Identities = 107/219 (48%), Positives = 156/219 (71%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESP+EG + +DF MPPICSP VRPG+P + + ++S+QLS+ +SSS ++L+EL +
Sbjct: 83 PSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSKMIDLKELSLVS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWMAYLDI C+DADG++FD +IP V+M ++GK++ +S+ + +
Sbjct: 143 GKAAWMAYLDIYCLDADGALFDAALLSAVASLSHLQIPVVAMNDDGKIVLVSEEDGQKRE 202
Query: 362 EQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFYK 541
++ +++ LTL +IPFSLTC+L+KNY+LADP AEEE I++T +TVVLD+SG+L+S YK
Sbjct: 203 QEPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTVVLDTSGQLISLYK 262
Query: 542 PGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
PGG LA + C + + RVKELK L +A + M+V
Sbjct: 263 PGGPVLAYTSAIQDCAALTRQRVKELKSFLDKANSAMEV 301
>ref|NP_001275445.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
gi|565400462|ref|XP_006365747.1| PREDICTED: exosome
complex component RRP43 isoform X2 [Solanum tuberosum]
gi|83283987|gb|ABC01901.1| 3'-5'-exoribonuclease/RNA
binding-like protein [Solanum tuberosum]
Length = 303
Score = 226 bits (577), Expect = 4e-57
Identities = 113/220 (51%), Positives = 157/220 (71%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
P+ E P+EG I ++F MPPICSP VRPG+P + A +IS+QLS+ + SSG ++L+EL +
Sbjct: 83 PTVECPDEGSIAIEFHMPPICSPLVRPGRPAEVASVISKQLSDTILSSGMIDLKELCLVG 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPIS-DNNNVED 358
GKAAWMAYLDI C+DADGS+FD IP VS+ E+G+++ +S DN ++
Sbjct: 143 GKAAWMAYLDIYCLDADGSLFDAALLSTVAAFSHLNIPVVSLNEDGRIVLVSEDNIQLKL 202
Query: 359 GEQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
+Q ++++ L L + PFSLTC+L+KNY+LADP AEEE I++T +TVVLDSS +LVS Y
Sbjct: 203 EKQPVNTEKRKLKLNSPPFSLTCLLHKNYILADPTAEEESIMETAVTVVLDSSYQLVSLY 262
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
KPGG A V+ CV+ AK RVKEL+ +L EA++ M+V
Sbjct: 263 KPGGPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDMEV 302
>ref|XP_006489986.1| PREDICTED: exosome complex component RRP43-like isoform X1 [Citrus
sinensis] gi|568873742|ref|XP_006489987.1| PREDICTED:
exosome complex component RRP43-like isoform X2 [Citrus
sinensis]
Length = 302
Score = 226 bits (576), Expect = 5e-57
Identities = 112/220 (50%), Positives = 157/220 (71%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESP+EG + +DF MPPICSP VRPG+P + A ++++QLS+ +SSSG +NL+EL +
Sbjct: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWM YLDI C+DADG++FD +IP VS+ ++GK++ + + E+
Sbjct: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKIVMLPEEQKEENS 201
Query: 362 EQTCQSQEK-CLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
E+ ++EK LTL IPFSLTC+L+KNY+LADP +EEE I++T +TVVLDSS +LVS Y
Sbjct: 202 EKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
KPGG+ LA V C++ + RVKEL IL EA++ M++
Sbjct: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
>ref|XP_006421389.1| hypothetical protein CICLE_v10005512mg [Citrus clementina]
gi|567857414|ref|XP_006421390.1| hypothetical protein
CICLE_v10005512mg [Citrus clementina]
gi|557523262|gb|ESR34629.1| hypothetical protein
CICLE_v10005512mg [Citrus clementina]
gi|557523263|gb|ESR34630.1| hypothetical protein
CICLE_v10005512mg [Citrus clementina]
Length = 302
Score = 226 bits (576), Expect = 5e-57
Identities = 112/220 (50%), Positives = 157/220 (71%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESP+EG + +DF MPPICSP VRPG+P + A ++++QLS+ +SSSG +NL+EL +
Sbjct: 83 PSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVG 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWM YLDI C+DADG++FD +IP VS+ ++GK++ + + E+
Sbjct: 143 GKAAWMVYLDIYCLDADGALFDAALLSAVAAFSNLQIPTVSL-DDGKIVMLPEEQKEENS 201
Query: 362 EQTCQSQEK-CLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
E+ ++EK LTL IPFSLTC+L+KNY+LADP +EEE I++T +TVVLDSS +LVS Y
Sbjct: 202 EKEPVNKEKRKLTLGGIPFSLTCILHKNYILADPTSEEESIMETLVTVVLDSSNQLVSLY 261
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
KPGG+ LA V C++ + RVKEL IL EA++ M++
Sbjct: 262 KPGGAVLAYTSAVQDCIALTRQRVKELHQILEEAISGMEI 301
>ref|XP_002308947.1| 3' exoribonuclease domain 1-containing family protein [Populus
trichocarpa] gi|222854923|gb|EEE92470.1| 3'
exoribonuclease domain 1-containing family protein
[Populus trichocarpa]
Length = 318
Score = 226 bits (575), Expect = 6e-57
Identities = 116/235 (49%), Positives = 160/235 (68%), Gaps = 16/235 (6%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLS---SSGFVNLRELL 172
PS ESPEEG I +DF MPPICSP VRPG+P + A +IS+QLS+ +S +SG +NL+EL
Sbjct: 83 PSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISRQVNSGMINLKELS 142
Query: 173 ISKGKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXX------------RIPAVSMTEE 316
+ GKAAWMAYLDI C+DADG++FD +IP VS+ ++
Sbjct: 143 LVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHSAFIYYRSLICAVQIPIVSLNDD 202
Query: 317 GKVIPISDNNN-VEDGEQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTF 493
GK++ +S+ ++ + E+ +++ LTL +IPFSLTC+L+KNY+LADP AEEE I++T
Sbjct: 203 GKIVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEESIMETL 262
Query: 494 ITVVLDSSGKLVSFYKPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
+TVVLDSS +LVSFYKPGG LA V CV+ + RVKEL+ IL E ++ M++
Sbjct: 263 VTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQRVKELQDILDETISGMEI 317
>ref|XP_006365748.1| PREDICTED: exosome complex component RRP43 isoform X3 [Solanum
tuberosum]
Length = 302
Score = 225 bits (573), Expect = 1e-56
Identities = 112/219 (51%), Positives = 156/219 (71%), Gaps = 1/219 (0%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
P+ E P+EG I ++F MPPICSP VRPG+P + A +IS+QLS+ + SSG ++L+EL +
Sbjct: 83 PTVECPDEGSIAIEFHMPPICSPLVRPGRPAEVASVISKQLSDTILSSGMIDLKELCLVG 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPIS-DNNNVED 358
GKAAWMAYLDI C+DADGS+FD IP VS+ E+G+++ +S DN ++
Sbjct: 143 GKAAWMAYLDIYCLDADGSLFDAALLSTVAAFSHLNIPVVSLNEDGRIVLVSEDNIQLKL 202
Query: 359 GEQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFY 538
+Q ++++ L L + PFSLTC+L+KNY+LADP AEEE I++T +TVVLDSS +LVS Y
Sbjct: 203 EKQPVNTEKRKLKLNSPPFSLTCLLHKNYILADPTAEEESIMETAVTVVLDSSYQLVSLY 262
Query: 539 KPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMD 655
KPGG A V+ CV+ AK RVKEL+ +L EA++ M+
Sbjct: 263 KPGGPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDME 301
>ref|XP_006373782.1| hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
gi|550320907|gb|ERP51579.1| hypothetical protein
POPTR_0016s05590g [Populus trichocarpa]
Length = 323
Score = 224 bits (570), Expect = 2e-56
Identities = 118/239 (49%), Positives = 158/239 (66%), Gaps = 21/239 (8%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSS------------- 142
PS ESP+EG I +DF MPPICSP VRPG+P + A +IS+QLS+ +S
Sbjct: 83 PSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISRQVKFSASIDSPQR 142
Query: 143 -------SGFVNLRELLISKGKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAV 301
SG +NL+EL + GKAAWMAYLDI C+DADG++FD +IP V
Sbjct: 143 LILHAEISGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVAAFSHLQIPIV 202
Query: 302 SMTEEGKVIPISDNNNVEDGEQTCQSQEKC-LTLLNIPFSLTCVLYKNYLLADPNAEEER 478
S+ ++GK++ +S+ + E+ ++EK LTL +IPFSLTC+L+KNY+LADP AEEE
Sbjct: 203 SLNDDGKIVLVSEEDEGAKLEKEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEES 262
Query: 479 ILQTFITVVLDSSGKLVSFYKPGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMD 655
I++T +TVVLDSS +LVSFYKPGGS A V CV+ + RVKEL+ IL EA++ M+
Sbjct: 263 IMETLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVALTRQRVKELQEILDEAISGME 321
>ref|XP_004498461.1| PREDICTED: exosome complex component RRP43-like [Cicer arietinum]
Length = 302
Score = 223 bits (569), Expect = 3e-56
Identities = 103/219 (47%), Positives = 152/219 (69%)
Frame = +2
Query: 2 PSEESPEEGRIVVDFQMPPICSPYVRPGKPIDEAILISEQLSNVLSSSGFVNLRELLISK 181
PS ESP+EG + +DF MPPICSP VRPG+P + ++S+QLS+ +SSSG ++L+EL +
Sbjct: 83 PSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPVVSKQLSDTISSSGMIDLKELSLVS 142
Query: 182 GKAAWMAYLDITCIDADGSIFDXXXXXXXXXXXXXRIPAVSMTEEGKVIPISDNNNVEDG 361
GKAAWMAYLD+ C+DADG++FD + V+M ++GK++ +SD + +
Sbjct: 143 GKAAWMAYLDVYCLDADGALFDAALLSAVAALSHCKXXXVAMNDDGKIVLMSDEDGQKQS 202
Query: 362 EQTCQSQEKCLTLLNIPFSLTCVLYKNYLLADPNAEEERILQTFITVVLDSSGKLVSFYK 541
++ ++K LTL + P SLTC+L+KNY+LADP AEEE I++T +T+VLD+SG+L+S YK
Sbjct: 203 KEQVNKEKKKLTLRSTPLSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYK 262
Query: 542 PGGSALASLDVVSVCVSYAKLRVKELKGILAEALAQMDV 658
PGG LA + CV+ + R+KELK L + + M+V
Sbjct: 263 PGGPVLAYTSAIQDCVALTRQRIKELKSFLDKENSAMEV 301