BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00018062
         (1406 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY19734.1| Copia-like retrotransposable element, putative [T...   172   6e-75
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   179   1e-74
gb|EXB44219.1| ABC transporter C family member 9 [Morus notabilis]    167   3e-74
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   176   9e-74
emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]   182   1e-73
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   176   2e-73
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]   189   2e-73
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         176   2e-73
gb|ABA93730.1| retrotransposon protein, putative, unclassified [...   182   2e-73
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             175   3e-73
gb|ABG37663.1| CCHC-type integrase [Populus trichocarpa]              167   9e-73
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]   169   1e-72
gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   182   2e-72
emb|CAN74767.1| hypothetical protein VITISV_041860 [Vitis vinifera]   170   3e-72
gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group...   182   5e-72
gb|AFP55578.1| copia-type polyprotein [Rosa rugosa]                   178   5e-72
emb|CAB75932.1| putative protein [Arabidopsis thaliana]               176   8e-72
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   182   1e-71
emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]   174   2e-71
gb|EOY12702.1| Uncharacterized protein TCM_031224 [Theobroma cacao]   169   5e-71

>gb|EOY19734.1| Copia-like retrotransposable element, putative [Theobroma cacao]
          Length = 1207

 Score =  172 bits (436), Expect(2) = 6e-75
 Identities = 86/219 (39%), Positives = 130/219 (59%), Gaps = 2/219 (0%)
 Frame = -1

Query: 1355 TKRMANINNQSCLIEEEILSFKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIG 1176
            T+ +A+I ++  +   E  SF E      W  A+  E  M+ K +TW+L+  P  +K IG
Sbjct: 678  TRSLADIYDRCHVALMEPTSFSEVVQVDGWQKAMENEVNMIKKNNTWDLVPRPANQKVIG 737

Query: 1175 CKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEW 996
             +WV   K NT+G + K KARL+ K + Q  GI Y ET AP            L    +W
Sbjct: 738  VRWVYRTKLNTDGSVNKLKARLVVKGYAQIQGIGYLETSAPVARLDTIRLLVALVAKEKW 797

Query: 995  EIYHLDIKSAFLHGEITEEIYMKQLEGFIKD--PNKVCKLKKALYGLKQAPRAWYEKLEN 822
            +++HLD+KSAFL+G + E+I+++Q +GFI+    N++CKLKKALYGLKQAPRAWY +++N
Sbjct: 798  KLWHLDVKSAFLNGLLEEDIFIEQPKGFIEPGMENRICKLKKALYGLKQAPRAWYARVDN 857

Query: 821  HLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIFLT 705
            +L  +G     + P L+       + VI+  ++DDI +T
Sbjct: 858  YLCNKGFHMSESKPTLYVCCSSAGKQVIVSIYVDDILVT 896



 Score =  137 bits (345), Expect(2) = 6e-75
 Identities = 76/188 (40%), Positives = 111/188 (59%), Gaps = 1/188 (0%)
 Frame = -2

Query: 697  NTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEKDK 518
            NT  ++ FKKE+ + F++T+LG   Y+LG++  +    +ILHQ+ Y  +LL  FK +  K
Sbjct: 899  NTELLLKFKKEMMEEFKMTNLGLITYFLGLEFVQAEKFIILHQQKYATELLKKFKMQNCK 958

Query: 517  GHKTLLDPGVNL-FKNNEVKANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPSEL 341
               T +   V     NNE  A+   YR LI SLLYL+ + PDI F    LSRFM +P+  
Sbjct: 959  AISTPIAANVKFSLSNNEELADATLYRRLIGSLLYLSSSGPDIMFSTSLLSRFMHQPTVT 1018

Query: 340  QLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGNLV 161
             L AA+ IL+Y+K +IN GI F +     LQ F D+++A    D K+TTGF+ +    + 
Sbjct: 1019 HLSAAKRILRYIKGSINFGIKFGREQSHHLQGFLDSDWAGSLDDSKSTTGFVFSFGSGVF 1078

Query: 160  SWISQKQK 137
            SW S+KQ+
Sbjct: 1079 SWASKKQE 1086


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  179 bits (454), Expect(2) = 1e-74
 Identities = 92/232 (39%), Positives = 143/232 (61%), Gaps = 2/232 (0%)
 Frame = -1

Query: 1391 QEISSTQPTRARTKRMANINNQSCLIEEEILSFKEAFNKPEWNAAIHKEYEMLVKKDTWE 1212
            +E  S +PT   T   ++   + C    E + F+EA  K  W  A+ +E + + K DTWE
Sbjct: 781  EEPPSEEPTTPPTSPTSSQIEEKC----EPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWE 836

Query: 1211 LIVLPPERKAIGCKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSETFAPXXXXXXX 1032
            L  LP   KAIG KWV   K N++G +E++KARL+AK ++Q+ GIDY E FAP       
Sbjct: 837  LTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETV 896

Query: 1031 XXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGFI--KDPNKVCKLKKALYGLK 858
                 LA  ++W+I+ +D+KSAFL+G++ EE+Y++Q +G+I   + +KV +LKKALYGLK
Sbjct: 897  RLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLK 956

Query: 857  QAPRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIFLTG 702
            QAPRAW  +++ +   +  IKC  + +  Y+  +K  ++I   ++DD+  TG
Sbjct: 957  QAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKEDILIACLYVDDLIFTG 1007



 Score =  129 bits (325), Expect(2) = 1e-74
 Identities = 67/189 (35%), Positives = 112/189 (59%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N +    FKKE+   FE+TD+G   YYLGI++ +  + + + QE Y +++L  FK + 
Sbjct: 1007 GNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDD 1066

Query: 523  DKGHKTLLDPGVNLFKNNEVKA-NYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
                 T ++ G+ L K  E +  +  T++SL+ SL YLT T+PDI + V  +SR+M+ P+
Sbjct: 1067 SNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPT 1126

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
                KAA+ IL+Y+K T+N G+ +   S  KL  + D+++     D K+T+GF+  +   
Sbjct: 1127 TTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDT 1186

Query: 166  LVSWISQKQ 140
              +W+S+KQ
Sbjct: 1187 AFTWMSKKQ 1195


>gb|EXB44219.1| ABC transporter C family member 9 [Morus notabilis]
          Length = 2077

 Score =  167 bits (423), Expect(2) = 3e-74
 Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 2/199 (1%)
 Frame = -1

Query: 1292 KEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKAR 1113
            +EA     W AA+ +E  M+ K DTW+L+  P +++ IG KWV   K N +G + K K R
Sbjct: 931  EEAIKSASWKAAMEEELNMINKNDTWQLVERPTDKRVIGVKWVFRTKLNPDGSVNKLKVR 990

Query: 1112 LLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIY 933
            L+ K ++Q+ G+D+S+TFAP            L     W+I+ LD+KSAFL+G + EEI+
Sbjct: 991  LVVKGYSQQFGVDFSDTFAPVARHDTIRLLIALVAQKGWKIFQLDVKSAFLNGYLKEEIF 1050

Query: 932  MKQLEGFIKDPN--KVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSE 759
            ++Q   F+K  N  KV +LKKALYGLKQAPRAWY ++++HL+  G  +  ++  L Y+ +
Sbjct: 1051 VEQPPCFLKKGNEDKVYQLKKALYGLKQAPRAWYSRIDDHLLQLGFKRSPSEATL-YVQQ 1109

Query: 758  EKNRLVIIVFHIDDIFLTG 702
              + L+II  ++DD+ +TG
Sbjct: 1110 AGDDLLIISLYVDDLLITG 1128



 Score =  140 bits (352), Expect(2) = 3e-74
 Identities = 76/189 (40%), Positives = 113/189 (59%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N T +  FKKE++++FE+TDLG   Y+LG++I +    + + QE Y + +L  F  E 
Sbjct: 1128 GSNITLVQKFKKEMQNVFEMTDLGEMSYFLGMKILQTEQGIFISQEKYAKDVLKKFGMEN 1187

Query: 523  DKGHKTLLDPGVNLFKNN-EVKANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             K   T L     L K +   K +   YRSLI  LLYLT T+PDI F    LSRFMQ PS
Sbjct: 1188 CKDVSTPLGLNEKLSKEDGSDKIDAGIYRSLIGCLLYLTATRPDIMFATSLLSRFMQAPS 1247

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
            E+  KAA+ +L+YVK T + G+ F+K   ++L  F D+++     D K+T+ ++ T+   
Sbjct: 1248 EIHFKAAKRVLRYVKGTTDFGVWFKKGEEVQLIGFVDSDWGGSLDDMKSTSSYIFTIGSG 1307

Query: 166  LVSWISQKQ 140
            ++SW S+KQ
Sbjct: 1308 MISWNSRKQ 1316


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  176 bits (446), Expect(2) = 9e-74
 Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 10/243 (4%)
 Frame = -1

Query: 1400 NQTQEISSTQPTRAR--------TKRMANINNQSCLIEEEILSFKEAFNKPEWNAAIHKE 1245
            +Q +E SS +  R R        T+   N+       E E + F+EA  K  W  A+ +E
Sbjct: 798  SQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEE 857

Query: 1244 YEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSE 1065
             + + K DTWEL  LP   K IG KWV   K N++G +E++KARL+AK + Q+ GIDY E
Sbjct: 858  IKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDE 917

Query: 1064 TFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGFI--KDPNKV 891
             FAP            LA  ++W+I+ +D+KSAFL+G++ EE+Y++Q +G+I   + +KV
Sbjct: 918  VFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 977

Query: 890  CKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIF 711
             +LKKALYGLKQAPRAW  +++ +   +  IKC  + +  Y+  +K  ++I   ++DD+ 
Sbjct: 978  LRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKEDILIACLYVDDLI 1036

Query: 710  LTG 702
             TG
Sbjct: 1037 FTG 1039



 Score =  129 bits (325), Expect(2) = 9e-74
 Identities = 67/189 (35%), Positives = 112/189 (59%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N +    FKKE+   FE+TD+G   YYLGI++ +  + + + QE Y +++L  FK + 
Sbjct: 1039 GNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDD 1098

Query: 523  DKGHKTLLDPGVNLFKNNEVKA-NYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
                 T ++ G+ L K  E +  +  T++SL+ SL YLT T+PDI + V  +SR+M+ P+
Sbjct: 1099 SNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPT 1158

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
                KAA+ IL+Y+K T+N G+ +   S  KL  + D+++     D K+T+GF+  +   
Sbjct: 1159 TTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDT 1218

Query: 166  LVSWISQKQ 140
              +W+S+KQ
Sbjct: 1219 AFTWMSKKQ 1227


>emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]
          Length = 1505

 Score =  182 bits (462), Expect(2) = 1e-73
 Identities = 87/198 (43%), Positives = 125/198 (63%), Gaps = 1/198 (0%)
 Frame = -1

Query: 1292 KEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKAR 1113
            +EA   PEW  AI +E   L K  TWE++ LP  +  +GCKWV + KYN+ G LE++KAR
Sbjct: 999  QEALQVPEWKKAIFEEMRALEKNHTWEVMGLPKGKTTVGCKWVFTVKYNSNGSLERYKAR 1058

Query: 1112 LLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIY 933
            L+AK F Q  GIDY ETFAP            +A + +W +  LD+K+AFL+G + EE+Y
Sbjct: 1059 LVAKGFTQTYGIDYLETFAPVAKLNTVRVLLSIAANLDWPLQQLDVKNAFLNGNLEEEVY 1118

Query: 932  MKQLEGFIKD-PNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSEE 756
            M    GF +   +KVCKLKK+LYGLKQ+PRAW+E+    +  QG ++ ++D  +F     
Sbjct: 1119 MDPPPGFDEHFGSKVCKLKKSLYGLKQSPRAWFERFTQFVKNQGYVQAQSDHTMFIKHSN 1178

Query: 755  KNRLVIIVFHIDDIFLTG 702
              ++ I++ ++DDI LTG
Sbjct: 1179 DGKIAILIVYVDDIILTG 1196



 Score =  122 bits (307), Expect(2) = 1e-73
 Identities = 66/189 (34%), Positives = 108/189 (57%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G + T++   KK L   FE+ DLG+ RY+LG+++ R    +++ Q  YI  LL       
Sbjct: 1196 GDHVTEMDRLKKSLALEFEIKDLGSLRYFLGMEVARSKRGIVVSQRKYILDLLKETGMSG 1255

Query: 523  DKGHKTLLDPGVNLFKNNEVK-ANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             +   T +DP   L   N+    N   Y+ L+  L+YL++T+PDI F V  +S+FM  P 
Sbjct: 1256 CRPADTPIDPNQKLGDTNDGNLVNTTRYQKLVGKLIYLSHTRPDIAFAVSIVSQFMHSPY 1315

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
            E+ L+A   IL+Y+K T   G+ F+K     ++A+ D ++A   +D ++T+G+   + GN
Sbjct: 1316 EVHLEAVYRILRYLKSTPGKGLFFKKSEQKTIEAYTDADWAGSVTDRRSTSGYCTYIWGN 1375

Query: 166  LVSWISQKQ 140
            LV+W S+KQ
Sbjct: 1376 LVTWRSKKQ 1384


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  176 bits (445), Expect(2) = 2e-73
 Identities = 93/243 (38%), Positives = 145/243 (59%), Gaps = 10/243 (4%)
 Frame = -1

Query: 1400 NQTQEISSTQPTRAR--------TKRMANINNQSCLIEEEILSFKEAFNKPEWNAAIHKE 1245
            +Q +E SS +  R R        T+   N+       E E + F++A  K  W  A+ +E
Sbjct: 798  SQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEE 857

Query: 1244 YEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSE 1065
             + + K DTWEL  LP   KAIG KWV   K N++G +E++KARL+AK ++Q+ GIDY E
Sbjct: 858  IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDE 917

Query: 1064 TFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGFI--KDPNKV 891
             FAP            LA  ++W+I+ +D+KSAFL+G++ EE+Y++Q +G+I   + +KV
Sbjct: 918  VFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 977

Query: 890  CKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIF 711
             +LKK LYGLKQAPRAW  +++ +   +  IKC  + +  Y+  +K  ++I   ++DD+ 
Sbjct: 978  LRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKEDILIACLYVDDLI 1036

Query: 710  LTG 702
             TG
Sbjct: 1037 FTG 1039



 Score =  129 bits (323), Expect(2) = 2e-73
 Identities = 67/189 (35%), Positives = 112/189 (59%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N +    FKKE+   FE+TD+G   YYLGI++ +  + + + QE Y +++L  FK + 
Sbjct: 1039 GNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDD 1098

Query: 523  DKGHKTLLDPGVNLFKNNEVKA-NYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
                 T ++ G+ L K  E +  +  T++SL+ SL YLT T+PDI + V  +SR+M+ P+
Sbjct: 1099 SNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPT 1158

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
                KAA+ IL+Y+K T+N G+ +   S  KL  + D+++     D K+T+GF+  +   
Sbjct: 1159 TTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDT 1218

Query: 166  LVSWISQKQ 140
              +W+S+KQ
Sbjct: 1219 AFTWMSKKQ 1227


>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
          Length = 1424

 Score =  189 bits (480), Expect(2) = 2e-73
 Identities = 92/243 (37%), Positives = 152/243 (62%), Gaps = 8/243 (3%)
 Frame = -1

Query: 1406 IINQTQEISSTQPTRARTKRMANINNQSCLIEEEILSFKEAFNKPEWNAAIHKEYEMLVK 1227
            I + T   SS   T  + + + ++  +  L   E  SF+EA    +W  A+ KE +++ K
Sbjct: 869  IESPTSXSSSPSSTPRKMRSLTDVYERCNLCIVEPQSFEEAIKDEDWRKAMEKEIDVIEK 928

Query: 1226 KDTWELIVLPPERKAIGCKWVLS------NKYNTEGILEKWKARLLAKDFNQKPGIDYSE 1065
             +TW+L+  P +++ IG KW+         KY+++G +++ KARL+AK ++Q+PG D+ E
Sbjct: 929  NETWQLVEKPKDKEIIGVKWIFRVKWIFRXKYHSDGRVQRLKARLVAKGYSQQPGXDFHE 988

Query: 1064 TFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGFIKD--PNKV 891
            TFAP            +A    W +Y LDIKSAFL+G++  EIY++Q +GF+ D   NKV
Sbjct: 989  TFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEXEIYVEQPQGFVVDGEENKV 1048

Query: 890  CKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIF 711
             KLKKALYGLKQAPRAWY +++++ I  G I+ +++P L+  S++ ++++I+  ++DD+ 
Sbjct: 1049 YKLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYVKSKDNSQILIVALYVDDLI 1108

Query: 710  LTG 702
             TG
Sbjct: 1109 FTG 1111



 Score =  115 bits (287), Expect(2) = 2e-73
 Identities = 64/189 (33%), Positives = 107/189 (56%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G +   +  F+ E+   +E++D+G   Y+LGI++ +  D + + Q+ Y+  +L  F    
Sbjct: 1111 GNDEKMVEKFRNEMMKKYEMSDMGLLHYFLGIEVYQEEDGVFICQKRYVEHILKKFGMAG 1170

Query: 523  DKGHKTLLDPGVNLFKNNEVK-ANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
                 T L     L K +  K  +   +RSL+ +LLYLT T+PDI F    LSRFM  PS
Sbjct: 1171 CNXVSTPLVVNEKLRKEDGGKMVDETHFRSLVGNLLYLTATRPDIMFAASLLSRFMHYPS 1230

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
             L L AA+ +L+Y++ T+ LGI + +   +KL   CD+++     D K+T+G+  +L   
Sbjct: 1231 HLHLGAAKRVLRYLQGTVELGIKYFRNIEVKLIGHCDSDWGGCIDDMKSTSGYAFSLGSG 1290

Query: 166  LVSWISQKQ 140
            ++SW+S+KQ
Sbjct: 1291 VISWVSKKQ 1299


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  176 bits (445), Expect(2) = 2e-73
 Identities = 93/243 (38%), Positives = 145/243 (59%), Gaps = 10/243 (4%)
 Frame = -1

Query: 1400 NQTQEISSTQPTRAR--------TKRMANINNQSCLIEEEILSFKEAFNKPEWNAAIHKE 1245
            +Q +E SS +  R R        T+   N+       E E + F++A  K  W  A+ +E
Sbjct: 798  SQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEE 857

Query: 1244 YEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSE 1065
             + + K DTWEL  LP   KAIG KWV   K N++G +E++KARL+AK ++Q+ GIDY E
Sbjct: 858  IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDE 917

Query: 1064 TFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGFI--KDPNKV 891
             FAP            LA  ++W+I+ +D+KSAFL+G++ EE+Y++Q +G+I   + +KV
Sbjct: 918  VFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 977

Query: 890  CKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIF 711
             +LKK LYGLKQAPRAW  +++ +   +  IKC  + +  Y+  +K  ++I   ++DD+ 
Sbjct: 978  LRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKEDILIACLYVDDLI 1036

Query: 710  LTG 702
             TG
Sbjct: 1037 FTG 1039



 Score =  128 bits (322), Expect(2) = 2e-73
 Identities = 67/189 (35%), Positives = 112/189 (59%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N +    FKKE+   FE+TD+G   YYLGI++ +  + + + QE Y +++L  FK + 
Sbjct: 1039 GNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDD 1098

Query: 523  DKGHKTLLDPGVNLFKNNEVKA-NYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
                 T ++ G+ L K  E +  +  T++SL+ SL YLT T+PDI + V  +SR+M+ P+
Sbjct: 1099 SNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPT 1158

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
                KAA+ IL+Y+K T+N G+ +   S  KL  + D+++     D K+T+GF+  +   
Sbjct: 1159 TTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDT 1218

Query: 166  LVSWISQKQ 140
              +W+S+KQ
Sbjct: 1219 AFTWMSKKQ 1227


>gb|ABA93730.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 656

 Score =  182 bits (463), Expect(2) = 2e-73
 Identities = 88/200 (44%), Positives = 128/200 (64%), Gaps = 2/200 (1%)
 Frame = -1

Query: 1295 FKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKA 1116
            +K A   P+W  A+ +E   LVK  TWEL+ LPPE++A+GCKWV + K   EG ++++KA
Sbjct: 150  WKCAKQDPKWKDAMKEELNALVKNKTWELVKLPPEKRAVGCKWVFTVKQTPEGKVDRYKA 209

Query: 1115 RLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEI 936
            RL+AK ++Q  GIDY ETFAP             AV+  W ++ LD+K+AFLHG++ EE+
Sbjct: 210  RLVAKGYSQTYGIDYDETFAPVAKMGIVRALVSCAVNFGWPLHQLDVKNAFLHGDLHEEV 269

Query: 935  YMKQLEGF--IKDPNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLS 762
            YM+   GF   +   KVCKLKK+LYGLKQ+PRAW+++  + +   G  +C  D  +FY  
Sbjct: 270  YMEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKH 329

Query: 761  EEKNRLVIIVFHIDDIFLTG 702
               N + I+  ++DDI +TG
Sbjct: 330  RGTN-ITILAVYVDDIVITG 348



 Score =  121 bits (304), Expect(2) = 2e-73
 Identities = 67/188 (35%), Positives = 101/188 (53%)
 Frame = -2

Query: 703 GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
           G +  +I   K+ L   FEV DLG  RY+LGI+I R    ++L Q  Y+  LL       
Sbjct: 348 GDDVEEIRCLKERLGKAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLG 407

Query: 523 DKGHKTLLDPGVNLFKNNEVKANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPSE 344
            +   T +D    L   +    N   Y+ L+  L+YL +T+PDI +VV  +SR+M +P  
Sbjct: 408 CRASTTPIDRNHQLCAQSGDPVNKEAYQRLVGRLIYLCHTRPDISYVVSVVSRYMHDPRT 467

Query: 343 LQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGNL 164
             L     IL+Y+K T   G+ F K   L ++ +CD ++A    D ++T+G+ V + GNL
Sbjct: 468 GHLDVVHKILRYLKGTPGKGLWFRKNGHLNVEGYCDADWASSMDDRRSTSGYCVFVGGNL 527

Query: 163 VSWISQKQ 140
           VSW S+KQ
Sbjct: 528 VSWRSKKQ 535


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  175 bits (443), Expect(2) = 3e-73
 Identities = 94/243 (38%), Positives = 143/243 (58%), Gaps = 10/243 (4%)
 Frame = -1

Query: 1400 NQTQEISSTQPTRAR--------TKRMANINNQSCLIEEEILSFKEAFNKPEWNAAIHKE 1245
            +Q +E SS +  R R        T+   N+       E E + F+EA  K  W  A+ +E
Sbjct: 737  SQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEE 796

Query: 1244 YEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSE 1065
             + + K DTWEL  LP   KAIG KWV   K N++G +E++KARL+AK ++Q+ GIDY E
Sbjct: 797  IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDE 856

Query: 1064 TFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGFI--KDPNKV 891
             FAP            LA  ++W+I+ +D K AFL+G+  EE+Y++Q +G+I   + +KV
Sbjct: 857  VFAPVARLETVRLIISLAAQNKWKIHQMDFKLAFLNGDFEEEVYIEQPQGYIVKGEEDKV 916

Query: 890  CKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIF 711
             +LKKALYGLKQAPRAW  +++ +   +  IKC  + +  Y+  +K  ++I   ++DD+ 
Sbjct: 917  LRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKEDILIACLYVDDLI 975

Query: 710  LTG 702
             TG
Sbjct: 976  FTG 978



 Score =  129 bits (323), Expect(2) = 3e-73
 Identities = 67/189 (35%), Positives = 112/189 (59%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N +    FKKE+   FE+TD+G   YYLGI++ +  + + + QE Y +++L  FK + 
Sbjct: 978  GNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNRIFITQEGYAKEVLKKFKMDD 1037

Query: 523  DKGHKTLLDPGVNLFKNNEVKA-NYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
                 T ++ G+ L K  E +  +  T++SL+ SL YLT T+PDI + V  +SR+M+ P+
Sbjct: 1038 SNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPT 1097

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
                KAA+ IL+Y+K T+N G+ +   S  KL  + D+++     D K+T+GF+  +   
Sbjct: 1098 TTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGRDVDDRKSTSGFVFYIGDT 1157

Query: 166  LVSWISQKQ 140
              +W+S+KQ
Sbjct: 1158 AFTWMSKKQ 1166


>gb|ABG37663.1| CCHC-type integrase [Populus trichocarpa]
          Length = 2037

 Score =  167 bits (422), Expect(2) = 9e-73
 Identities = 83/201 (41%), Positives = 121/201 (60%), Gaps = 2/201 (0%)
 Frame = -1

Query: 1298 SFKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWK 1119
            S+ EA   P W  AI  E + + +  TW+L  LP  +K IG KWV   K+N +G + + K
Sbjct: 1277 SYTEAARFPAWIDAIKSEIDSIERNGTWKLTELPQNKKEIGVKWVFKTKFNPDGSIFRHK 1336

Query: 1118 ARLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEE 939
            ARL+ K F Q  G+DY +TFAP            LA   +W++YHLD+K AFL+G + EE
Sbjct: 1337 ARLVVKGFAQVAGVDYDDTFAPVARHDTIRLLLALAGQKKWKVYHLDVKFAFLNGILLEE 1396

Query: 938  IYMKQLEGFI--KDPNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYL 765
            IY++Q EGF+     +KV KL KALYGLKQAPRAWY +++ +LI  G  +   +  L+  
Sbjct: 1397 IYVQQPEGFVVTSHEHKVYKLHKALYGLKQAPRAWYNRIDTYLIQLGFKRSENEVTLYLK 1456

Query: 764  SEEKNRLVIIVFHIDDIFLTG 702
             ++    ++I  ++DD+ +TG
Sbjct: 1457 QDQDGLQLVISLYVDDMLVTG 1477



 Score =  135 bits (340), Expect(2) = 9e-73
 Identities = 70/190 (36%), Positives = 111/190 (58%), Gaps = 1/190 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N   +  FK+E++D+FE++DLG   Y+LG++I +    + + Q  Y   +L  FK E 
Sbjct: 1477 GSNVKLLAEFKREMQDVFEMSDLGIINYFLGMEIHQCSSGIFISQRKYAVDILKRFKLES 1536

Query: 523  DKGHKTLLDPGVNLFKNNEVKANYVT-YRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             K   TL+     + KN+  K    + YRSL+ SLLYLT T+PD+ F+   LSRFM  PS
Sbjct: 1537 CKEVTTLMAQNEKISKNDGEKLEEPSAYRSLVGSLLYLTATKPDLMFLAGLLSRFMSSPS 1596

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
               +  A+ +LKY++ T NLGIL+ K   + L  + D+++A    D K+T G++ T+   
Sbjct: 1597 NFHMGVAKRVLKYIRGTTNLGILYSKSGGVNLSGYADSDWAGSVDDMKSTFGYVFTIGSG 1656

Query: 166  LVSWISQKQK 137
             + W ++KQ+
Sbjct: 1657 TICWNAKKQE 1666


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score =  169 bits (427), Expect(2) = 1e-72
 Identities = 90/238 (37%), Positives = 136/238 (57%), Gaps = 3/238 (1%)
 Frame = -1

Query: 1406 IINQTQEISSTQPTRARTKR-MANINNQSCLIEEEILSFKEAFNKPEWNAAIHKEYEMLV 1230
            II    ++ +T  T     R + ++  +  L+  E   + EA    EW  A+  E + + 
Sbjct: 1493 IIEGPLDVEATSDTPVLKMRPLFDVYERCNLVHAEPTCYTEAARFLEWIEAMKAEIDAIE 1552

Query: 1229 KKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSETFAPX 1050
            +  TW+L  LP  + AIG KWV   K+N++G + + KARL+ K F Q  G+DY +TFAP 
Sbjct: 1553 RNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPV 1612

Query: 1049 XXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGF--IKDPNKVCKLKK 876
                       LA    W++YHLD+KSAFL+G + EEIY++Q EGF  I   +KV KL K
Sbjct: 1613 ARHDTIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGHEHKVYKLHK 1672

Query: 875  ALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIFLTG 702
            ALYGLKQAPRAWY ++++HLI  G  +   +  L+    +    +++  ++DD+ +TG
Sbjct: 1673 ALYGLKQAPRAWYSRIDSHLIQLGFRRSENEATLYLKQNDDGLQLVVSLYVDDMLVTG 1730



 Score =  133 bits (334), Expect(2) = 1e-72
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N   +  FK E++D+FE+ DLG   Y+LG++I +    + + Q  Y   +L  FK E 
Sbjct: 1730 GSNVKLLADFKMEMQDVFEMFDLGIMNYFLGMEIYQCSWGIFISQRKYAMDILKKFKLES 1789

Query: 523  DKGHKTLLDPGVNLFKNNEVKANYVT-YRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             K   T L     + KN+  K    + YRSL+ SLLYLT T+PD+ F    LSRFM  PS
Sbjct: 1790 CKEVATPLAQNEKISKNDGEKLEEPSAYRSLVGSLLYLTVTKPDLMFPASLLSRFMSSPS 1849

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
             + +  A+ +LKY+K T NLGI + K   +KL  + D+++A    D K+T+G+  T+   
Sbjct: 1850 NVHMGVAKRVLKYLKGTTNLGIWYLKTGGVKLDGYADSDWAGSVDDMKSTSGYAFTIGSG 1909

Query: 166  LVSWISQKQK 137
            ++ W S+KQ+
Sbjct: 1910 VICWNSRKQE 1919


>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  182 bits (463), Expect(2) = 2e-72
 Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 2/201 (0%)
 Frame = -1

Query: 1298 SFKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWK 1119
            SF+EA     W  A+  E  M+ K +TWEL+  P +R+ IG KWV   K N +G ++K+K
Sbjct: 638  SFQEAEKHDNWIKAMEDEIHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNLDGSVQKYK 697

Query: 1118 ARLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEE 939
            ARL+AK F QKPGIDY ET+AP            LA    W+IY LD+KSAFL+G + EE
Sbjct: 698  ARLVAKGFKQKPGIDYYETYAPVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEE 757

Query: 938  IYMKQLEGFIKD--PNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYL 765
            IY++Q EGF      NKV +LKKALYGLKQAPR WY +++ + I +G  K  ++P L Y+
Sbjct: 758  IYVEQPEGFSVQGGENKVFRLKKALYGLKQAPRVWYSQIDKYFIQKGFAKSISEPTL-YV 816

Query: 764  SEEKNRLVIIVFHIDDIFLTG 702
            ++    ++I+  ++DD+  TG
Sbjct: 817  NKTGTDILIVSLYVDDLIYTG 837



 Score =  119 bits (297), Expect(2) = 2e-72
 Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G +   +  FKK++   +E++DLG   Y+LG+++ +  + + + Q  Y   +L  FK + 
Sbjct: 837  GNSEKMMQDFKKDMMHTYEMSDLGLLYYFLGMEVHQSDEGIFISQRKYAENILKKFKMDN 896

Query: 523  DKGHKTLLDPGVNL-FKNNEVKANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             K   T L P      ++   K +   YRSL+ SLLYLT T+PDI F    LSR+M  PS
Sbjct: 897  CKSVTTPLLPNEKQKARDGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPS 956

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
            +L   AA+ +L+Y+K T + GI ++ +   KL  + D+++A    D K T+G+  +L   
Sbjct: 957  QLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKGTSGYAFSLGSG 1016

Query: 166  LVSWISQKQ 140
            + SW ++KQ
Sbjct: 1017 MCSWSTKKQ 1025


>emb|CAN74767.1| hypothetical protein VITISV_041860 [Vitis vinifera]
          Length = 1945

 Score =  170 bits (430), Expect(2) = 3e-72
 Identities = 90/238 (37%), Positives = 137/238 (57%), Gaps = 3/238 (1%)
 Frame = -1

Query: 1406 IINQTQEISSTQPTRARTKR-MANINNQSCLIEEEILSFKEAFNKPEWNAAIHKEYEMLV 1230
            II    ++ +T  T     R ++++  +  L+  E   + EA    EW  A+  E + + 
Sbjct: 848  IIEGPLDVEATSDTPVLKMRPLSDVYERCNLVHAEPTCYTEAARFLEWIEAMKAEIDAIE 907

Query: 1229 KKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSETFAPX 1050
            +  TW+L  LP  + AIG KWV   K+N++G + + KARL+ K F Q  G+DY +TFAP 
Sbjct: 908  RNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPV 967

Query: 1049 XXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGF--IKDPNKVCKLKK 876
                       LA    W++YHLD+KSAFL+G + EEIY++Q EGF  I   +KV KL K
Sbjct: 968  ARHDTIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGHEHKVYKLHK 1027

Query: 875  ALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIFLTG 702
            ALYGLKQAPRAWY ++++HLI  G  +   +  L+    +    +++  ++DD+ +TG
Sbjct: 1028 ALYGLKQAPRAWYSRIDSHLIQLGFRRSENEATLYLKQNDDGLQLVVSLYVDDMLVTG 1085



 Score =  130 bits (328), Expect(2) = 3e-72
 Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 1/190 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G N   +  FK E++D+FE++DLG   Y+LG++I +    + + Q  Y   +L  FK E 
Sbjct: 1085 GSNVKLLADFKMEMQDVFEMSDLGIMNYFLGMEIYQCSWGIFISQRKYAMDILKKFKLES 1144

Query: 523  DKGHKTLLDPGVNLFKNNEVKANYVT-YRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             K   T L     + KN+  K    + YRSL+ SLLYLT T+PD+ F    LSRF+  PS
Sbjct: 1145 CKEVATPLAQNEKISKNDGEKLEEPSAYRSLVGSLLYLTVTRPDLMFPTSLLSRFLSSPS 1204

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
             + +  ++ +LKYVK T NLGI + K   +KL  + D+++A    D K+T+ ++ T+   
Sbjct: 1205 NVHMGVSKRVLKYVKGTTNLGIWYLKTVGVKLDGYADSDWAGSVDDMKSTSSYVFTIGSG 1264

Query: 166  LVSWISQKQK 137
            ++ W S+KQ+
Sbjct: 1265 VICWNSRKQE 1274


>gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711651|gb|ABF99446.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1393

 Score =  182 bits (461), Expect(2) = 5e-72
 Identities = 87/200 (43%), Positives = 127/200 (63%), Gaps = 2/200 (1%)
 Frame = -1

Query: 1295 FKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWKA 1116
            +K A   P+W  A+ +E   LVK  TWEL+ LPPE++A+GCKWV + K   EG ++++KA
Sbjct: 887  WKCAKQDPKWKDAMKEELNALVKNKTWELVKLPPEKRAVGCKWVFTVKQTPEGKVDRYKA 946

Query: 1115 RLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEEI 936
            RL+AK ++Q  GIDY ETFAP             AV+  W ++ LD+K+AFLHG++ EE+
Sbjct: 947  RLVAKGYSQTYGIDYDETFAPVAKMGTVRALVSCAVNFGWPLHQLDVKNAFLHGDLHEEV 1006

Query: 935  YMKQLEGF--IKDPNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYLS 762
            YM+   GF   +   KVCKLKK+LYGLKQ+PRAW+++  + +   G  +C  D  +FY  
Sbjct: 1007 YMEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFY-K 1065

Query: 761  EEKNRLVIIVFHIDDIFLTG 702
                 + I+  ++DDI +TG
Sbjct: 1066 HRGTHITILAVYVDDIVITG 1085



 Score =  118 bits (295), Expect(2) = 5e-72
 Identities = 65/188 (34%), Positives = 100/188 (53%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G +  +I   K+ L   FEV DLG  RY+LGI+I R    ++L Q  Y+  LL       
Sbjct: 1085 GDDVEEIRCLKERLGKAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLG 1144

Query: 523  DKGHKTLLDPGVNLFKNNEVKANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPSE 344
             +   T +D    L   +    +   Y+ L+  L+YL +T+PDI + V  +SR+M +P  
Sbjct: 1145 CRASTTPIDRNHQLCAQSGDPVDKEAYQRLVGRLIYLCHTRPDISYAVSVVSRYMHDPRT 1204

Query: 343  LQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGNL 164
              L     IL+Y+K T   G+ F K   L ++ +CD ++A    D ++T+G+ V + GNL
Sbjct: 1205 GHLDVVHKILRYLKGTPGKGLWFRKNGHLNVEGYCDADWASSMDDRRSTSGYCVFVGGNL 1264

Query: 163  VSWISQKQ 140
            VSW S+KQ
Sbjct: 1265 VSWRSKKQ 1272


>gb|AFP55578.1| copia-type polyprotein [Rosa rugosa]
          Length = 1187

 Score =  178 bits (451), Expect(2) = 5e-72
 Identities = 88/201 (43%), Positives = 123/201 (61%), Gaps = 2/201 (0%)
 Frame = -1

Query: 1298 SFKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWK 1119
            SF+EA     W  A+  E E +   DTW+L  LP   K IG KWV   KYN  G ++K K
Sbjct: 678  SFEEAVVHSRWREAMRAEIEAIETNDTWQLTSLPKGVKKIGVKWVFKTKYNEHGKVDKCK 737

Query: 1118 ARLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEE 939
            ARL+AK + Q+ GIDY+E +AP            LA    W I+ LD+KSAFLHGE+ E+
Sbjct: 738  ARLVAKGYAQQFGIDYTEVYAPVARWDTIRLIVALAAQKNWTIFQLDVKSAFLHGELNED 797

Query: 938  IYMKQLEGFIK--DPNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYL 765
            +Y++Q +GF +  +  KV KLKKALYGLKQAPRAWY ++E + + +G  +C  +  LF  
Sbjct: 798  VYIEQPQGFEQKGEEEKVYKLKKALYGLKQAPRAWYSRIEGYFVKEGFERCSYEHTLFVK 857

Query: 764  SEEKNRLVIIVFHIDDIFLTG 702
             E + +++I+  ++DD   TG
Sbjct: 858  IEGEGKMLIVSLYVDDQIFTG 878



 Score =  122 bits (305), Expect(2) = 5e-72
 Identities = 65/189 (34%), Positives = 107/189 (56%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G + + I  FK  +   FE+TDLG  +Y+LG++I +  + + L Q  Y R+++  F   K
Sbjct: 878  GNDMSMIEKFKSSMMHEFEMTDLGEMKYFLGVEIRQSAEGIHLCQSKYAREVIERFGMGK 937

Query: 523  DKGHKTLLDPGVNL-FKNNEVKANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
                +  + PG  L  +      +   ++ L+ SL+YLT T+PD+ +VVC +SRFM  P 
Sbjct: 938  SNPVRNPIVPGSKLSMEAGGAVVDGTLFKQLVGSLMYLTATRPDLIYVVCLISRFMAHPR 997

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
            E  L AA+ +L+Y+K T  LG+ + +    +L  + D++YA      ++T+GF+  L G 
Sbjct: 998  EAHLSAAKRVLRYLKGTTELGVFYRRGVDDELVGYTDSDYAGDMDGKRSTSGFVFMLSGG 1057

Query: 166  LVSWISQKQ 140
             VSW S+KQ
Sbjct: 1058 AVSWSSRKQ 1066


>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
          Length = 1339

 Score =  176 bits (445), Expect(2) = 8e-72
 Identities = 88/208 (42%), Positives = 128/208 (61%), Gaps = 2/208 (0%)
 Frame = -1

Query: 1319 LIEEEILSFKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTE 1140
            + E + + F +A     W  A+  E E +VK +TWEL  LP     IG KWV   K N +
Sbjct: 822  MTEADPIQFDDAVKDKIWREAMEHEIESIVKNNTWELTTLPKGFTPIGVKWVYKTKLNED 881

Query: 1139 GILEKWKARLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFL 960
            G ++K+KARL+AK + Q  GIDY+E FAP            ++    WEI+ LD+KSAFL
Sbjct: 882  GEVDKYKARLVAKGYAQCYGIDYTEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFL 941

Query: 959  HGEITEEIYMKQLEGFIK--DPNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRA 786
            HGE+ EE+Y++Q EGFI+  +  KV KL+KALYGLKQAPRAWY ++E + + +   +C +
Sbjct: 942  HGELKEEVYVRQPEGFIREGEEEKVYKLRKALYGLKQAPRAWYSRIEAYFLKEEFERCPS 1001

Query: 785  DPNLFYLSEEKNRLVIIVFHIDDIFLTG 702
            +  LF  +   N ++I+  ++DD+  TG
Sbjct: 1002 EHTLFTKTRVGN-ILIVSLYVDDLIFTG 1028



 Score =  123 bits (309), Expect(2) = 8e-72
 Identities = 67/191 (35%), Positives = 109/191 (57%), Gaps = 3/191 (1%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G +      FKK +   FE++DLG  +++LGI++ +    + + Q  Y R++L  F  ++
Sbjct: 1028 GSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDE 1087

Query: 523  DKGHKTLLDPGVNLFKN-NEVKANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
                K  + PG  L K+ N  K +   ++ L+ SL+YLT T+PD+ + VC +SRFM  P 
Sbjct: 1088 SNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPR 1147

Query: 346  ELQLKAARNILKYVKETINLGILF--EKISPLKLQAFCDTNYADRGSDGKATTGFLVTLE 173
                 AA+ IL+Y+K T+ LGI +   K   LKL AF D++YA   +D ++T+GF+  + 
Sbjct: 1148 MSHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMA 1207

Query: 172  GNLVSWISQKQ 140
               + W S+KQ
Sbjct: 1208 SGAICWASKKQ 1218


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  182 bits (463), Expect(3) = 1e-71
 Identities = 87/201 (43%), Positives = 131/201 (65%), Gaps = 2/201 (0%)
 Frame = -1

Query: 1298 SFKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEGILEKWK 1119
            S   A  + EW  A+  EY+ L + +TW L+ LP  R+AIGCKWV   K N +G ++K+K
Sbjct: 939  SVSAALQQDEWKKAMVAEYDALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTVQKYK 998

Query: 1118 ARLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLHGEITEE 939
            ARL+AK F+Q+ G D++ETF+P            +A+   W I  LD+ +AFL+G++ EE
Sbjct: 999  ARLVAKGFHQQAGFDFTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEE 1058

Query: 938  IYMKQLEGFI--KDPNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRADPNLFYL 765
            ++M+Q +GFI  ++PN VC+L KALYGLKQAPRAW+EKL   L++ G +  ++D +LF L
Sbjct: 1059 VFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLF-L 1117

Query: 764  SEEKNRLVIIVFHIDDIFLTG 702
                N +  ++ ++DDI + G
Sbjct: 1118 RFTPNHITYVLVYVDDILVIG 1138



 Score =  114 bits (285), Expect(3) = 1e-71
 Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G +T  I S   +L   F + DLG   Y+LGIQ+    + L L Q  YIR LL   K   
Sbjct: 1138 GSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVH 1197

Query: 523  DKGHKTLLDPGVNL-FKNNEVKANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             K  +T L  G+ L   + +   +   YRS + +L Y+T T+P++ F V  + +FMQ P+
Sbjct: 1198 CKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPT 1257

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
            E   K  + IL+Y++ T+  G+  +K S L L  FCD ++A    D ++T+G  V L  N
Sbjct: 1258 EEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPN 1317

Query: 166  LVSWISQKQ 140
            L+SW S+KQ
Sbjct: 1318 LISWQSKKQ 1326



 Score = 22.7 bits (47), Expect(3) = 1e-71
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 147  KNKKIVSKTVIKDEYRAIGDTTSNVI*FLELL*DYGEDIQTPVEISTDN 1
            K + IVS++ I+ EYR++    + +     LL +    +  P  +  DN
Sbjct: 1324 KKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDN 1372


>emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]
          Length = 1300

 Score =  174 bits (442), Expect(2) = 2e-71
 Identities = 93/230 (40%), Positives = 135/230 (58%), Gaps = 6/230 (2%)
 Frame = -1

Query: 1373 QPTRARTKR----MANINNQSCLIEEEILSFKEAFNKPEWNAAIHKEYEMLVKKDTWELI 1206
            QP+  RTK+     AN+        +E  +F EAF   +W+ A+ +E   L +  TWEL+
Sbjct: 758  QPSEERTKKPNPKYANVAIVEDANAKEPXTFAEAFQNSDWSKAMXEEIAALKRNQTWELV 817

Query: 1205 VLPPERKAIGCKWVLSNKYNTEGILEKWKARLLAKDFNQKPGIDYSETFAPXXXXXXXXX 1026
              P + +   CKWV   K  T+G +E+ KA L+A+ F+Q+ G+DY ETF+P         
Sbjct: 818  PKPRDVEPXSCKWVYKIKRRTDGSIERHKAXLVARGFSQQYGLDYDETFSPVXKLTTVRV 877

Query: 1025 XXXLAVHHEWEIYHLDIKSAFLHGEITEEIYMKQLEGFIKD--PNKVCKLKKALYGLKQA 852
               LA + +W+++ +D+K+AFLHGE+  EIYM Q  GF     P  VCKL+KALYGLKQA
Sbjct: 878  LLALAANKDWDLWQMDVKNAFLHGELDREIYMNQPMGFQSQGHPEYVCKLRKALYGLKQA 937

Query: 851  PRAWYEKLENHLITQGLIKCRADPNLFYLSEEKNRLVIIVFHIDDIFLTG 702
            PRAWY K+   L   G     AD +LF +     +L I++ ++DD+ +TG
Sbjct: 938  PRAWYGKIAEFLTQSGYSVTPADSSLF-VKANGGKLAIVLVYVDDLIITG 986



 Score =  123 bits (308), Expect(2) = 2e-71
 Identities = 66/189 (34%), Positives = 107/189 (56%), Gaps = 1/189 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G +  +I   K+ L   FE+ +LG  +++LG+++ R  + + L Q+ Y + LL  F   +
Sbjct: 986  GDDVEEIFRTKENLSVRFEMKELGQLKHFLGLEVDRTNEGIFLCQQKYAKDLLKKFGMLE 1045

Query: 523  DKGHKTLLDPGVNLFKNNEVKANYVT-YRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             K   T ++P   + ++        T YR L+ SLLYLT T PDI + V  +SR+MQ P 
Sbjct: 1046 CKPISTPMEPNAKMCEHEGKDLKDATMYRQLVGSLLYLTLTXPDISYAVGVMSRYMQNPK 1105

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
            +  L+A R IL++VK TI+ G+L++K    KL  +CD +YA       +TTG++  L   
Sbjct: 1106 KPHLEAVRRILRHVKGTIDYGLLYKKXEDCKLVGYCDADYAGDHDTRXSTTGYVFMLGSG 1165

Query: 166  LVSWISQKQ 140
             +SW S++Q
Sbjct: 1166 AISWCSKRQ 1174


>gb|EOY12702.1| Uncharacterized protein TCM_031224 [Theobroma cacao]
          Length = 3109

 Score =  169 bits (427), Expect(2) = 5e-71
 Identities = 89/207 (42%), Positives = 126/207 (60%), Gaps = 2/207 (0%)
 Frame = -1

Query: 1316 IEEEILSFKEAFNKPEWNAAIHKEYEMLVKKDTWELIVLPPERKAIGCKWVLSNKYNTEG 1137
            +E+E L+ +    K  W  A++ E EM+ K  TW L+     +  IG KW+   K N +G
Sbjct: 566  VEDESLAVRAKDEK--WVQAMNMEMEMIKKNKTWVLVDRSEAQNVIGVKWIYKTKLNPDG 623

Query: 1136 ILEKWKARLLAKDFNQKPGIDYSETFAPXXXXXXXXXXXXLAVHHEWEIYHLDIKSAFLH 957
             + K+KARL+ K ++Q  GI+Y ETFA             LAV   W I+HLD+KSAFL+
Sbjct: 624  SVNKYKARLVVKGYSQVYGINYLETFASVARHDTIRLLVALAVKKNWGIWHLDVKSAFLN 683

Query: 956  GEITEEIYMKQLEGFIK--DPNKVCKLKKALYGLKQAPRAWYEKLENHLITQGLIKCRAD 783
            G ++E IY KQ EGF++    +KVCKL KALYGLKQAPRAWYE++++ LI QG  +   +
Sbjct: 684  GTLSEVIYTKQPEGFVEAGAESKVCKLIKALYGLKQAPRAWYERIDSFLIAQGFFRSMNE 743

Query: 782  PNLFYLSEEKNRLVIIVFHIDDIFLTG 702
            P L+  S      +II  ++DD+ +TG
Sbjct: 744  PTLYVRSSNSIVQLIISLYVDDLLITG 770



 Score =  127 bits (320), Expect(2) = 5e-71
 Identities = 73/190 (38%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
 Frame = -2

Query: 703  GKNTTKIISFKKELEDIFEVTDLGNARYYLGIQICR*GDSLILHQEAYIRKLLVSFKEEK 524
            G +  ++  FKK++   FE++DLG   Y+LG++  +  D + +HQ  Y R+LL  F  + 
Sbjct: 770  GPDNAQLNKFKKQMMAEFEMSDLGKMTYFLGLEFIQGPDYIFIHQSKYSRELLKRFHMKD 829

Query: 523  DKGHKTLLDPGVNLFKNNEV-KANYVTYRSLIESLLYLTYTQPDIHFVVCYLSRFMQEPS 347
             K   T L  GV L K +   KA   TYRSL+  LLYLT ++PDI F    LSRFMQ PS
Sbjct: 830  CKPVATPLASGVKLCKEDGAFKACCTTYRSLVGCLLYLTASRPDIMFGTSVLSRFMQAPS 889

Query: 346  ELQLKAARNILKYVKETINLGILFEKISPLKLQAFCDTNYADRGSDGKATTGFLVTLEGN 167
             +   AA+ +L+Y+K T N G+ F       L   CD+++     D ++T+GF V+    
Sbjct: 890  TIHYSAAKRMLRYLKGTTNFGLKFCINESYDLLGHCDSDWEGSLEDSRSTSGFCVSFGSA 949

Query: 166  LVSWISQKQK 137
            + SW S+KQ+
Sbjct: 950  VFSWSSKKQE 959