BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00017851
         (581 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 386   e-105
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   383   e-104
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   381   e-104
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   381   e-104
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   381   e-104
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   381   e-104
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   381   e-104
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   381   e-104
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   380   e-103
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   322   4e-86
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   322   6e-86
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   247   1e-63
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   238   1e-60
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 234   2e-59
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   234   2e-59
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   233   3e-59
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 232   5e-59
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   223   4e-56
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               219   3e-55
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   216   3e-54

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  386 bits (992), Expect = e-105
 Identities = 185/193 (95%), Positives = 189/193 (97%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL
Sbjct: 171 TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
            A NQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTP
Sbjct: 231 QAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFEDVLSGNL+
Sbjct: 351 HTCFEDVLSGNLL 363


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  383 bits (983), Expect = e-104
 Identities = 183/193 (94%), Positives = 187/193 (96%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHL
Sbjct: 171 TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           T   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTP
Sbjct: 231 TTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFED+LSGNL+
Sbjct: 351 HTCFEDILSGNLL 363


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  381 bits (979), Expect = e-104
 Identities = 183/193 (94%), Positives = 186/193 (96%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL
Sbjct: 171 TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           T   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTP
Sbjct: 231 TTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFED+LSGNL+
Sbjct: 351 HTCFEDILSGNLL 363


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  381 bits (979), Expect = e-104
 Identities = 183/193 (94%), Positives = 186/193 (96%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL
Sbjct: 171 TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           T   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTP
Sbjct: 231 TTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFED+LSGNL+
Sbjct: 351 HTCFEDILSGNLL 363


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  381 bits (979), Expect = e-104
 Identities = 183/193 (94%), Positives = 186/193 (96%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL
Sbjct: 171 TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           T   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTP
Sbjct: 231 TTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFED+LSGNL+
Sbjct: 351 HTCFEDILSGNLL 363


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  381 bits (979), Expect = e-104
 Identities = 183/193 (94%), Positives = 186/193 (96%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL
Sbjct: 171 TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           T   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTP
Sbjct: 231 TTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFED+LSGNL+
Sbjct: 351 HTCFEDILSGNLL 363


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  381 bits (979), Expect = e-104
 Identities = 183/193 (94%), Positives = 186/193 (96%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL
Sbjct: 171 TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           T   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTP
Sbjct: 231 TTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFED+LSGNL+
Sbjct: 351 HTCFEDILSGNLL 363


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  381 bits (979), Expect = e-104
 Identities = 183/193 (94%), Positives = 186/193 (96%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL
Sbjct: 171 TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           T   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTP
Sbjct: 231 TTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFED+LSGNL+
Sbjct: 351 HTCFEDILSGNLL 363


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 669

 Score =  380 bits (976), Expect = e-103
 Identities = 183/193 (94%), Positives = 187/193 (96%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHL
Sbjct: 171 TLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           TA    T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTP
Sbjct: 231 TAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTP 290

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS
Sbjct: 291 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 350

Query: 541 HTCFEDVLSGNLI 579
           HTCFED+LSGNL+
Sbjct: 351 HTCFEDILSGNLL 363


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  322 bits (825), Expect = 4e-86
 Identities = 158/187 (84%), Positives = 165/187 (88%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYATLVLPPE     RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL
Sbjct: 171 TLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 229

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
           TA   PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTP
Sbjct: 230 TAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTP 289

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           ISKT MMQMFFYIKS KEA+      + +QLISTKELQHYQPSEITLLVNYFEFTA+LDS
Sbjct: 290 ISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDS 349

Query: 541 HTCFEDV 561
           HTCFEDV
Sbjct: 350 HTCFEDV 356


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
           gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
           [Tulip virus X]
          Length = 1361

 Score =  322 bits (824), Expect = 6e-86
 Identities = 151/193 (78%), Positives = 173/193 (89%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L
Sbjct: 171 TLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYL 230

Query: 181 TAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 360
            + +  T+TAQRLETKGANHLFIFQRG YLTPERRTFTT   YVTVP+IFLP   N RTP
Sbjct: 231 ISEST-TVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTP 289

Query: 361 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 540
           I+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS
Sbjct: 290 ITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDS 349

Query: 541 HTCFEDVLSGNLI 579
            TC ED+LSG+L+
Sbjct: 350 ATCHEDILSGSLL 362


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
           RecName: Full=RNA replication protein; AltName: Full=176
           kDa protein; AltName: Full=ORF1 protein; Includes:
           RecName: Full=RNA-directed RNA polymerase; Includes:
           RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
           protein product [Papaya mosaic virus]
           gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
           virus]
          Length = 1547

 Score =  247 bits (631), Expect = 1e-63
 Identities = 119/196 (60%), Positives = 146/196 (74%), Gaps = 4/196 (2%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+ VG  
Sbjct: 173 TLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRF 232

Query: 181 TAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 348
             A++      +T+Q LETKGANHLFIFQRG +LTPE R F+T   YVT+P IFLP+++N
Sbjct: 233 KWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFN 292

Query: 349 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 528
            R PI KT   Q+F Y+KSVK   ERDIWAK RQL+ T ELQ Y P E+TLLVNYF   A
Sbjct: 293 ARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFLLIA 352

Query: 529 SLDSHTCFEDVLSGNL 576
            L S TCF++VLSG +
Sbjct: 353 RLRSETCFDNVLSGGM 368


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
           gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
           RNA polymerase [Cassava common mosaic virus]
           gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  238 bits (606), Expect = 1e-60
 Identities = 116/204 (56%), Positives = 142/204 (69%), Gaps = 12/204 (5%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG +
Sbjct: 171 TFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLI 230

Query: 181 T--AANQP----------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 324
                N P           +TAQR+ETKGANHLF+FQRG   TP+ R+  T   Y+TVP 
Sbjct: 231 EYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPA 290

Query: 325 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 504
           +FLP+K+N R P+ KTI  QMF YIKSVK+  ERDI++K RQLI T ELQ Y P E+ LL
Sbjct: 291 VFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLL 350

Query: 505 VNYFEFTASLDSHTCFEDVLSGNL 576
            NYF   + L S    E+VL+G+L
Sbjct: 351 ANYFMLISELSSKASAEEVLAGSL 374


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  234 bits (596), Expect = 2e-59
 Identities = 111/197 (56%), Positives = 142/197 (72%), Gaps = 4/197 (2%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG  
Sbjct: 173 TLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKF 232

Query: 181 TAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 348
              ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN
Sbjct: 233 EWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYN 292

Query: 349 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 528
            R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   +
Sbjct: 293 ARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLIS 352

Query: 529 SLDSHTCFEDVLSGNLI 579
            LDS TCF++VL+G ++
Sbjct: 353 KLDSVTCFDNVLTGGVL 369


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  234 bits (596), Expect = 2e-59
 Identities = 111/197 (56%), Positives = 142/197 (72%), Gaps = 4/197 (2%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG  
Sbjct: 173 TLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKF 232

Query: 181 TAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 348
              ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN
Sbjct: 233 EWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYN 292

Query: 349 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 528
            R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   +
Sbjct: 293 ARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLIS 352

Query: 529 SLDSHTCFEDVLSGNLI 579
            LDS TCF++VL+G ++
Sbjct: 353 KLDSVTCFDNVLTGGVL 369


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
           replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  233 bits (593), Expect = 3e-59
 Identities = 111/197 (56%), Positives = 141/197 (71%), Gaps = 4/197 (2%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG  
Sbjct: 173 TLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKF 232

Query: 181 TAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 348
              ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN
Sbjct: 233 EWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYN 292

Query: 349 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 528
            R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   +
Sbjct: 293 ARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLIS 352

Query: 529 SLDSHTCFEDVLSGNLI 579
            LDS TCF++VL+G  +
Sbjct: 353 KLDSVTCFDNVLTGGAL 369


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  232 bits (592), Expect = 5e-59
 Identities = 111/197 (56%), Positives = 141/197 (71%), Gaps = 4/197 (2%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 180
           TLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG  
Sbjct: 173 TLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKF 232

Query: 181 TAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 348
              ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN
Sbjct: 233 EWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYN 292

Query: 349 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 528
            R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   +
Sbjct: 293 ARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLIS 352

Query: 529 SLDSHTCFEDVLSGNLI 579
            LDS TCF++VL+G  +
Sbjct: 353 KLDSVTCFDNVLTGGAL 369


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
           [Allium virus X]
          Length = 1701

 Score =  223 bits (567), Expect = 4e-56
 Identities = 111/193 (57%), Positives = 139/193 (72%), Gaps = 1/193 (0%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGH 177
           TL AT+VLP EA YR+ SL+P +YTL+Y  E  F+Y PGGH GA Y H + QL+WL VG 
Sbjct: 169 TLVATMVLPAEAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGR 228

Query: 178 LTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRT 357
           +   NQ  ITAQR+E+K ANHLF+FQRGN  TP  R F T + YVT+P IFLP+K+N R 
Sbjct: 229 VRYKNQ-IITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRV 287

Query: 358 PISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLD 537
           PI KT++MQ+F Y+K V +  ERDI+AK RQLI T +LQ +  SE+  +VNYF F A  D
Sbjct: 288 PIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQD 347

Query: 538 SHTCFEDVLSGNL 576
           S TCF D+LSG+L
Sbjct: 348 SMTCFSDILSGSL 360


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  219 bits (559), Expect = 3e-55
 Identities = 108/200 (54%), Positives = 138/200 (69%), Gaps = 7/200 (3%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYDQLE 159
           T+ AT+VLP EALY L SLYP +Y+L+Y +         F Y PGGH GA Y H+  Q++
Sbjct: 171 TVLATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQID 230

Query: 160 WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 339
           WL  GH+    +  ITAQ+LETK ANHLFI++RG Y TPE R F T   YVT+P IFLP 
Sbjct: 231 WLRFGHIIDG-KVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPA 289

Query: 340 KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 519
           ++N R PI KT++MQ+F Y+K+V  AKERDIWAK RQLI T++LQ Y P+EI  LVNYF 
Sbjct: 290 QFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFL 349

Query: 520 FTASLDSHTCFEDVLSGNLI 579
           F A   + T F+ +L G++I
Sbjct: 350 FIAKTSAVTSFDSMLDGSII 369


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
           replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  216 bits (551), Expect = 3e-54
 Identities = 109/199 (54%), Positives = 134/199 (67%), Gaps = 6/199 (3%)
 Frame = +1

Query: 1   TLYATLVLPPEALYRLRSLYPQIYTLTYSE------DGFMYIPGGHAGASYFHKYDQLEW 162
           TL AT+VLP EA + L S+YP IYTL Y          F Y PGGH GA Y H+  QL+W
Sbjct: 171 TLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYVHELKQLDW 230

Query: 163 LTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEK 342
           L+VG LT     TITAQ++ETK ANHLFIFQRG+ +TP  R F+T   +VT+P IFLPEK
Sbjct: 231 LSVGRLTDG-VTTITAQKIETKAANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIFLPEK 289

Query: 343 YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF 522
           +N R PI KT++MQMF Y+K VK+  ERDIWAK+RQLI T++LQ +   E+  L NYF F
Sbjct: 290 FNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHLTNYFVF 349

Query: 523 TASLDSHTCFEDVLSGNLI 579
                S  CF+DVL G  +
Sbjct: 350 VGKQSSINCFDDVLKGGFL 368