BLASTX nr result
ID: Ephedra28_contig00017556
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00017556
(757 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFW75001.1| REX1 DNA Repair family protein [Zea mays] 102 1e-19
gb|AFW74999.1| REX1 DNA Repair family protein, partial [Zea mays] 102 1e-19
ref|XP_004960540.1| PREDICTED: uncharacterized protein LOC101780... 100 4e-19
gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana] 100 4e-19
ref|NP_001060068.1| Os07g0573600 [Oryza sativa Japonica Group] g... 100 4e-19
ref|XP_003566711.1| PREDICTED: xylem cysteine proteinase 1-like ... 100 4e-19
ref|XP_002439126.1| hypothetical protein SORBIDRAFT_09g000940 [S... 100 4e-19
ref|NP_001148022.1| REX1 DNA Repair family protein [Zea mays] gi... 100 5e-19
gb|EEC78671.1| hypothetical protein OsI_18797 [Oryza sativa Indi... 100 7e-19
ref|XP_006477302.1| PREDICTED: general transcription factor IIH ... 100 9e-19
dbj|BAK07005.1| predicted protein [Hordeum vulgare subsp. vulgare] 99 1e-18
ref|XP_002889933.1| hypothetical protein ARALYDRAFT_471390 [Arab... 99 1e-18
ref|XP_002266482.1| PREDICTED: general transcription factor IIH ... 99 1e-18
ref|NP_172702.1| nucleotide excision repair, TFIIH, subunit TTDA... 99 2e-18
gb|EMT14713.1| General transcription factor IIH subunit 5 [Aegil... 99 2e-18
ref|XP_002329886.1| predicted protein [Populus trichocarpa] gi|5... 98 3e-18
ref|XP_006363721.1| PREDICTED: general transcription factor IIH ... 96 1e-17
ref|XP_004147953.1| PREDICTED: general transcription factor IIH ... 96 1e-17
ref|XP_001757645.1| predicted protein [Physcomitrella patens] gi... 96 2e-17
ref|XP_006417239.1| hypothetical protein EUTSA_v10009271mg [Eutr... 95 2e-17
>gb|AFW75001.1| REX1 DNA Repair family protein [Zea mays]
Length = 154
Score = 102 bits (254), Expect = 1e-19
Identities = 45/70 (64%), Positives = 60/70 (85%)
Frame = -1
Query: 547 KMVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISE 368
KMVNAIKGL ISCD+PM +FI++LNA+ PP+E+FI+ +LD T+MFVQP V H I+S+I E
Sbjct: 84 KMVNAIKGLFISCDVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGE 143
Query: 367 FRNKITYEKP 338
FR++ +YEKP
Sbjct: 144 FRDQNSYEKP 153
>gb|AFW74999.1| REX1 DNA Repair family protein, partial [Zea mays]
Length = 132
Score = 102 bits (254), Expect = 1e-19
Identities = 45/70 (64%), Positives = 60/70 (85%)
Frame = -1
Query: 547 KMVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISE 368
KMVNAIKGL ISCD+PM +FI++LNA+ PP+E+FI+ +LD T+MFVQP V H I+S+I E
Sbjct: 62 KMVNAIKGLFISCDVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGE 121
Query: 367 FRNKITYEKP 338
FR++ +YEKP
Sbjct: 122 FRDQNSYEKP 131
>ref|XP_004960540.1| PREDICTED: uncharacterized protein LOC101780092 [Setaria italica]
Length = 70
Score = 100 bits (250), Expect = 4e-19
Identities = 46/69 (66%), Positives = 58/69 (84%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKGL ISCDIPM +FII+LNA+ PP+E+FI+ +LD THMFVQP V I+S+I EF
Sbjct: 1 MVNAIKGLFISCDIPMAQFIINLNASMPPSERFIVHMLDPTHMFVQPHVAEMIRSKIGEF 60
Query: 364 RNKITYEKP 338
R++ +YEKP
Sbjct: 61 RDQNSYEKP 69
>gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana]
Length = 113
Score = 100 bits (250), Expect = 4e-19
Identities = 45/75 (60%), Positives = 63/75 (84%)
Frame = -1
Query: 562 ILREVKMVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQ 383
+L+ + MVNAIKG+ +SCDIPMT+FI+++N + PP++KFII VLDSTH+FVQP V I+
Sbjct: 37 VLQVLLMVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIR 96
Query: 382 SQISEFRNKITYEKP 338
S IS+FR++ +YEKP
Sbjct: 97 SAISDFRDQNSYEKP 111
>ref|NP_001060068.1| Os07g0573600 [Oryza sativa Japonica Group]
gi|34393555|dbj|BAC83153.1| unknown protein [Oryza
sativa Japonica Group] gi|113611604|dbj|BAF21982.1|
Os07g0573600 [Oryza sativa Japonica Group]
gi|215707252|dbj|BAG93712.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218199880|gb|EEC82307.1| hypothetical protein
OsI_26568 [Oryza sativa Indica Group]
gi|222637319|gb|EEE67451.1| hypothetical protein
OsJ_24828 [Oryza sativa Japonica Group]
Length = 131
Score = 100 bits (250), Expect = 4e-19
Identities = 46/79 (58%), Positives = 61/79 (77%)
Frame = -1
Query: 574 WLFCILREVKMVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVG 395
W + R MVNAIKGL ISCD+PM +FI++LNA+ P ++KFI+ +LD THMFVQP V
Sbjct: 52 WHSVLQRAENMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVA 111
Query: 394 HQIQSQISEFRNKITYEKP 338
I+S+ISEFR++ +YEKP
Sbjct: 112 EMIRSKISEFRDQNSYEKP 130
>ref|XP_003566711.1| PREDICTED: xylem cysteine proteinase 1-like [Brachypodium
distachyon]
Length = 457
Score = 100 bits (250), Expect = 4e-19
Identities = 45/69 (65%), Positives = 59/69 (85%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKGL ISCD+PM +FI++LNA+ P +EKFI+ +LD THMFVQP VG I+S+I+EF
Sbjct: 1 MVNAIKGLFISCDVPMAQFIVNLNASMPASEKFIVHMLDPTHMFVQPHVGEMIRSKIAEF 60
Query: 364 RNKITYEKP 338
R++ +YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_002439126.1| hypothetical protein SORBIDRAFT_09g000940 [Sorghum bicolor]
gi|241944411|gb|EES17556.1| hypothetical protein
SORBIDRAFT_09g000940 [Sorghum bicolor]
Length = 70
Score = 100 bits (250), Expect = 4e-19
Identities = 45/69 (65%), Positives = 59/69 (85%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKGL ISCDIPM +FI++LNA+ PP+E+FI+ +LD T+MFVQP V H I+S+I EF
Sbjct: 1 MVNAIKGLFISCDIPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEF 60
Query: 364 RNKITYEKP 338
R++ +YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|NP_001148022.1| REX1 DNA Repair family protein [Zea mays]
gi|195615234|gb|ACG29447.1| REX1 DNA Repair family
protein [Zea mays] gi|195628074|gb|ACG35867.1| REX1 DNA
Repair family protein [Zea mays]
gi|195639980|gb|ACG39458.1| REX1 DNA Repair family
protein [Zea mays] gi|413942353|gb|AFW75002.1| REX1 DNA
Repair family protein [Zea mays]
Length = 70
Score = 100 bits (249), Expect = 5e-19
Identities = 44/69 (63%), Positives = 59/69 (85%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKGL ISCD+PM +FI++LNA+ PP+E+FI+ +LD T+MFVQP V H I+S+I EF
Sbjct: 1 MVNAIKGLFISCDVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEF 60
Query: 364 RNKITYEKP 338
R++ +YEKP
Sbjct: 61 RDQNSYEKP 69
>gb|EEC78671.1| hypothetical protein OsI_18797 [Oryza sativa Indica Group]
gi|222630525|gb|EEE62657.1| hypothetical protein
OsJ_17460 [Oryza sativa Japonica Group]
Length = 81
Score = 100 bits (248), Expect = 7e-19
Identities = 45/77 (58%), Positives = 60/77 (77%)
Frame = -1
Query: 568 FCILREVKMVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQ 389
FC + MVNAIKGL ISCD+PM +FI++LNA+ P ++KFI+ +LD THMFVQP V
Sbjct: 4 FCSPKSRNMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEM 63
Query: 388 IQSQISEFRNKITYEKP 338
I+ +ISEFR++ +YEKP
Sbjct: 64 IRGKISEFRDQNSYEKP 80
>ref|XP_006477302.1| PREDICTED: general transcription factor IIH subunit 5-like isoform
X1 [Citrus sinensis] gi|568846947|ref|XP_006477303.1|
PREDICTED: general transcription factor IIH subunit
5-like isoform X2 [Citrus sinensis]
gi|568846949|ref|XP_006477304.1| PREDICTED: general
transcription factor IIH subunit 5-like isoform X3
[Citrus sinensis]
Length = 70
Score = 99.8 bits (247), Expect = 9e-19
Identities = 45/70 (64%), Positives = 60/70 (85%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKGL ISCDIPM +FII++NA+ P ++KFII +LDSTH+FVQP++ I+S I+EF
Sbjct: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
Query: 364 RNKITYEKPA 335
R++ +YEKPA
Sbjct: 61 RDQNSYEKPA 70
>dbj|BAK07005.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 71
Score = 99.4 bits (246), Expect = 1e-18
Identities = 42/70 (60%), Positives = 61/70 (87%)
Frame = -1
Query: 547 KMVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISE 368
KMVNAIKGL ISCDIPM +FI+++NA+ P ++KFI+ +LD THMF+QP++G I+S+++E
Sbjct: 1 KMVNAIKGLFISCDIPMAQFIVNMNASMPASDKFIVHILDPTHMFIQPNMGDYIKSKMAE 60
Query: 367 FRNKITYEKP 338
FR++ +YEKP
Sbjct: 61 FRDQNSYEKP 70
>ref|XP_002889933.1| hypothetical protein ARALYDRAFT_471390 [Arabidopsis lyrata subsp.
lyrata] gi|297335775|gb|EFH66192.1| hypothetical protein
ARALYDRAFT_471390 [Arabidopsis lyrata subsp. lyrata]
Length = 71
Score = 99.4 bits (246), Expect = 1e-18
Identities = 45/69 (65%), Positives = 59/69 (85%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKG+ ISCDIPMT+FI+++N + PP++KFII VLDSTH+FVQP V I+S IS+F
Sbjct: 1 MVNAIKGVFISCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60
Query: 364 RNKITYEKP 338
R++ +YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_002266482.1| PREDICTED: general transcription factor IIH subunit 5 [Vitis
vinifera] gi|297742669|emb|CBI34818.3| unnamed protein
product [Vitis vinifera]
Length = 70
Score = 99.4 bits (246), Expect = 1e-18
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNA KGL ISCDIPM +FII++NA+ P ++KFII VLDSTH+FVQP V I+S ISEF
Sbjct: 1 MVNATKGLFISCDIPMAQFIINMNASMPASQKFIIHVLDSTHLFVQPHVAEMIRSAISEF 60
Query: 364 RNKITYEKPA 335
R + +YEKPA
Sbjct: 61 REQNSYEKPA 70
>ref|NP_172702.1| nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis
thaliana] gi|38566546|gb|AAR24163.1| At1g12400
[Arabidopsis thaliana] gi|40823747|gb|AAR92302.1|
At1g12400 [Arabidopsis thaliana]
gi|332190754|gb|AEE28875.1| nucleotide excision repair,
TFIIH, subunit TTDA [Arabidopsis thaliana]
Length = 71
Score = 99.0 bits (245), Expect = 2e-18
Identities = 44/69 (63%), Positives = 59/69 (85%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKG+ +SCDIPMT+FI+++N + PP++KFII VLDSTH+FVQP V I+S IS+F
Sbjct: 1 MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60
Query: 364 RNKITYEKP 338
R++ +YEKP
Sbjct: 61 RDQNSYEKP 69
>gb|EMT14713.1| General transcription factor IIH subunit 5 [Aegilops tauschii]
Length = 70
Score = 98.6 bits (244), Expect = 2e-18
Identities = 42/69 (60%), Positives = 60/69 (86%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKGL ISCDIPM +FI+++NA+ P +EKFI+ +LD THMF+QP++G I+S+++EF
Sbjct: 1 MVNAIKGLFISCDIPMAQFIVNMNASMPASEKFIVHILDPTHMFIQPNMGDYIKSKMAEF 60
Query: 364 RNKITYEKP 338
R++ +YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_002329886.1| predicted protein [Populus trichocarpa]
gi|566147873|ref|XP_006368720.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|566147875|ref|XP_006368721.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|566147877|ref|XP_006368722.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346807|gb|ERP65289.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346808|gb|ERP65290.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346809|gb|ERP65291.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
Length = 70
Score = 97.8 bits (242), Expect = 3e-18
Identities = 46/70 (65%), Positives = 57/70 (81%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNA KGL ISCDIPM +FII+LNA+ P ++KFII +LDSTHMFVQP V I+S IS+F
Sbjct: 1 MVNATKGLFISCDIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDF 60
Query: 364 RNKITYEKPA 335
R + +YEKP+
Sbjct: 61 REQNSYEKPS 70
>ref|XP_006363721.1| PREDICTED: general transcription factor IIH subunit 5-like [Solanum
tuberosum]
Length = 70
Score = 96.3 bits (238), Expect = 1e-17
Identities = 44/70 (62%), Positives = 59/70 (84%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNA+KGL +SCDIPMT+FII++NA+ P ++KFII VLD+TH+FV+ D+ I+S IS+F
Sbjct: 1 MVNAVKGLYLSCDIPMTQFIINMNASLPQSQKFIIHVLDNTHLFVRSDMAGMIRSAISDF 60
Query: 364 RNKITYEKPA 335
R+ TYEKPA
Sbjct: 61 RDANTYEKPA 70
>ref|XP_004147953.1| PREDICTED: general transcription factor IIH subunit 5-like [Cucumis
sativus] gi|449494289|ref|XP_004159503.1| PREDICTED:
general transcription factor IIH subunit 5-like [Cucumis
sativus]
Length = 70
Score = 96.3 bits (238), Expect = 1e-17
Identities = 44/69 (63%), Positives = 56/69 (81%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKG+ ISCDIPM +FII+ NA+ P + +FII +LD+THMFVQP V I++ ISEF
Sbjct: 1 MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
Query: 364 RNKITYEKP 338
R +I+YEKP
Sbjct: 61 REQISYEKP 69
>ref|XP_001757645.1| predicted protein [Physcomitrella patens]
gi|168009908|ref|XP_001757647.1| predicted protein
[Physcomitrella patens] gi|162691339|gb|EDQ77702.1|
predicted protein [Physcomitrella patens]
gi|162691341|gb|EDQ77704.1| predicted protein
[Physcomitrella patens]
Length = 73
Score = 95.5 bits (236), Expect = 2e-17
Identities = 41/69 (59%), Positives = 57/69 (82%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKG+L++CDIPM + +IS+N + P A KFI+ +LD TH++VQPDVG +QS++ EF
Sbjct: 1 MVNAIKGILVTCDIPMAQLLISINDSMPNAHKFIVYMLDDTHIYVQPDVGKMLQSKLQEF 60
Query: 364 RNKITYEKP 338
R++ TYEKP
Sbjct: 61 RDQNTYEKP 69
>ref|XP_006417239.1| hypothetical protein EUTSA_v10009271mg [Eutrema salsugineum]
gi|557095010|gb|ESQ35592.1| hypothetical protein
EUTSA_v10009271mg [Eutrema salsugineum]
Length = 70
Score = 95.1 bits (235), Expect = 2e-17
Identities = 43/69 (62%), Positives = 57/69 (82%)
Frame = -1
Query: 544 MVNAIKGLLISCDIPMTEFIISLNAAKPPAEKFIIQVLDSTHMFVQPDVGHQIQSQISEF 365
MVNAIKG+ ISCDIPM +FI+++N++ P ++KFII VLD TH+FVQP V I+S ISEF
Sbjct: 1 MVNAIKGVFISCDIPMAQFIVNMNSSMPSSQKFIIHVLDGTHLFVQPHVEQMIRSTISEF 60
Query: 364 RNKITYEKP 338
R++ +YEKP
Sbjct: 61 RDQNSYEKP 69