BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00017146
         (1952 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001775586.1| predicted protein [Physcomitrella patens] gi...   352   3e-94
emb|CBI22720.3| unnamed protein product [Vitis vinifera]              340   1e-90
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   329   2e-87
ref|XP_006859054.1| hypothetical protein AMTR_s00068p00192690 [A...   329   3e-87
gb|EOY23205.1| RNA polymerase III subunit RPC82 family protein, ...   324   7e-86
ref|XP_006421933.1| hypothetical protein CICLE_v10004721mg [Citr...   306   2e-80
gb|EXC19135.1| DNA-directed RNA polymerase III subunit RPC3 [Mor...   306   3e-80
ref|XP_006490400.1| PREDICTED: DNA-directed RNA polymerase III s...   294   8e-77
ref|XP_002985756.1| hypothetical protein SELMODRAFT_424745 [Sela...   294   8e-77
gb|EMJ20202.1| hypothetical protein PRUPE_ppa004195mg [Prunus pe...   288   5e-75
ref|XP_002321920.2| RNA polymerase 3 subunit RPC82 family protei...   287   1e-74
ref|XP_004168254.1| PREDICTED: DNA-directed RNA polymerase III s...   280   1e-72
emb|CBI26210.3| unnamed protein product [Vitis vinifera]              280   1e-72
ref|XP_004140835.1| PREDICTED: DNA-directed RNA polymerase III s...   279   4e-72
ref|XP_006363319.1| PREDICTED: DNA-directed RNA polymerase III s...   278   6e-72
ref|XP_004240730.1| PREDICTED: DNA-directed RNA polymerase III s...   277   1e-71
ref|XP_002974451.1| hypothetical protein SELMODRAFT_414649 [Sela...   276   3e-71
ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polyp...   273   2e-70
ref|XP_006589539.1| PREDICTED: DNA-directed RNA polymerase III s...   271   1e-69
ref|XP_004489521.1| PREDICTED: DNA-directed RNA polymerase III s...   264   1e-67

>ref|XP_001775586.1| predicted protein [Physcomitrella patens] gi|162673004|gb|EDQ59533.1|
            predicted protein [Physcomitrella patens]
          Length = 520

 Score =  352 bits (903), Expect = 3e-94
 Identities = 209/536 (38%), Positives = 305/536 (56%), Gaps = 14/536 (2%)
 Frame = +3

Query: 123  KVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQHNCVQGFKISSDD-GSATGKAPT 299
            KV  CLVY+G L L ++A+F+ELNPS LK+ LLVL+QH+CVQ +K+  +  GSA  +  T
Sbjct: 3    KVVKCLVYRGPLALADIARFSELNPSTLKSSLLVLVQHSCVQAYKVEHEGVGSAPPRVST 62

Query: 300  QYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXXXXHGRLSFDQLKERAKAQSAERK 479
             Y    D +LHRMRFPKFL  VR                HGRL+ +Q+ +R  A++ ++ 
Sbjct: 63   SYVPLCDNILHRMRFPKFLLAVREDLGEEVGSLVEGLLEHGRLTLEQITQRTAAKAGKKV 122

Query: 480  DGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPR-SSVDPKKKVPRGATRR----IKLDV 644
                  G++E+F KLV A F+ERCP AEP + P+ S+V+P KKVPRGA +     +    
Sbjct: 123  ----VKGVKETFAKLVAARFIERCPAAEPSLQPKDSNVEPPKKVPRGAAKARGPILSAQD 178

Query: 645  NFETEEQRIAAAASLPDVERFNFYLPKRNDHHTGAFGKKRKYVTLEEDSRTGMPS----- 809
                  QRI  AA+  + +RF   +           G     V  E    + +P      
Sbjct: 179  TVSEVVQRILKAAAPDETDRFRLPISMA--------GMSAPIVDNETTDPSSLPQKVNDI 230

Query: 810  --DDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFCATRSIATTGKQDTS 983
              D+ E LWRVN+ +F+ + R + CV   R+RLD  A  +L  M  AT +  T+ +Q  S
Sbjct: 231  LIDEKEVLWRVNFEQFLRKLRHQTCVDMVRTRLDAGAAIILSAMLQATGNQETSARQHHS 290

Query: 984  APLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFLSRTGDHSGNYIINIRRIIQ 1163
             PLS + IT AVRS+ +G  MT++RIR  + Q+ S  VGFL++ G+   +Y IN+  II+
Sbjct: 291  VPLSMDAITQAVRSTPDGQHMTLERIRGLVAQLASDGVGFLAKAGEGGNSYAINMHNIIE 350

Query: 1164 VTQTSEVEAIVSNRFGAESRRIFSMLSMNGPMEQSKIAGKALLDARQSLGVLYRLLKDGY 1343
              Q +EVE IV  RFG E  RI+ +L++ G +EQ +I G+  +  +    +LYRLLK+ Y
Sbjct: 351  ARQRNEVEGIVLQRFGRECCRIYRLLAIKGQLEQKQI-GERAMAPKNVKELLYRLLKEQY 409

Query: 1344 LQL-QEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAALNLVQRLAXXXXXXXXXXX 1520
            +Q+ QEIA+T++H  +K+ YLW+VN  A+  +++DD+YHAA NL  R A           
Sbjct: 410  VQVQQEIAKTSEHIASKSIYLWKVNYRAVLYRVLDDLYHAATNLCLRHAHEIQKEQEVGL 469

Query: 1521 XXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIATILETSLLKLDDSILLFDCF 1688
                      ++    P+   +  Q++Q +RI +I  IL+ SLLKLDD+ILLF  F
Sbjct: 470  FMITI-----NTYTHPPLSQAAPAQQDQVKRISRITKILDASLLKLDDAILLFHDF 520


>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  340 bits (873), Expect = 1e-90
 Identities = 221/560 (39%), Positives = 318/560 (56%), Gaps = 15/560 (2%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            M ++   +LA  LI SHFG+LV KVC+CL+ KG LTL  + +FTEL P Q+K+C+LVLIQ
Sbjct: 1    MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 234  HNCVQGFKISSDDGSATGKAP---TQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXX 404
            HNCVQ F I  + G   G+AP   TQY      +LHRMRF KFL+ V             
Sbjct: 61   HNCVQAFAIQQEVG--FGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILE 118

Query: 405  XXXXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVI-PPR 581
                HGRL+ +Q+ +RAK+  +E +   ++A L ESF KLV AHFVERCP +EP + PP 
Sbjct: 119  GLLQHGRLTLEQILDRAKSNQSEGEPVVQDA-LRESFLKLVRAHFVERCPASEPFLAPPS 177

Query: 582  SSVDPKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYL---PKRNDHHTGAF 752
                P +K  RGA +  KL    +T EQR  AAA+  D +RF+  +      +D      
Sbjct: 178  EEETPARK--RGA-KSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPNVTA 234

Query: 753  GKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDR 932
            G+KRK   LE D  TG  S + + LWR N+ EFV   R KAC+A  ++RLD  A  VL  
Sbjct: 235  GEKRKQDALELDKETG-ASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSA 293

Query: 933  MFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQVGFLS 1109
            M  ATRS     K + S PLS + I   V  S+ G  MT++R+R SL+Q+ C+P V   +
Sbjct: 294  MLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAA 353

Query: 1110 RTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMN-GPMEQSKIAGKA 1286
                   +Y ++++ II++ Q  EVE+I   R+G ++ RIF +LS +   +E  KI+   
Sbjct: 354  E------SYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTT 407

Query: 1287 LLDARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKT-FYLWRVNESALKAQIVDDMYHAA 1463
             ++ + +  +LY+L KD YLQ++++   N H   ++ F LW+V +  L   ++++MYH+A
Sbjct: 408  FVEKKDTAKILYQLWKDEYLQMEKL---NLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSA 464

Query: 1464 LNLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQA-----ERIRKIA 1628
            LNL  R+A                       + +Q II L   +R  A     ER+RK+ 
Sbjct: 465  LNLSLRVAY--------------------ELEQEQEIIQLPREKRVGALGNRFERLRKVR 504

Query: 1629 TILETSLLKLDDSILLFDCF 1688
             +LE+SL+KLDD+I+LF+ F
Sbjct: 505  ILLESSLMKLDDAIMLFNDF 524


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
            vinifera]
          Length = 511

 Score =  329 bits (844), Expect = 2e-87
 Identities = 216/554 (38%), Positives = 310/554 (55%), Gaps = 9/554 (1%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            M ++   +LA  LI SHFG+LV KVC+CL+ KG LTL  + +FTEL P Q+K+C+LVLIQ
Sbjct: 1    MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 234  HNCVQGFKISSDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXXX 413
            HNCVQ F I  +      +  TQY      +LHRMRF KFL+ V                
Sbjct: 61   HNCVQAFAIQQE----APRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLL 116

Query: 414  XHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVI-PPRSSV 590
             HGRL+ +Q+ +RAK  S +R+   ++A L ESF KLV AHFVERCP +EP + PP    
Sbjct: 117  QHGRLTLEQILDRAK--SNQREPVVQDA-LRESFLKLVRAHFVERCPASEPFLAPPSEEE 173

Query: 591  DPKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYLPKRNDHHTGAFGKKRKY 770
             P +K  RGA +  KL    +T EQR  AAA+  D +RF+  +    D         RK 
Sbjct: 174  TPARK--RGA-KSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDD---SPNRKQ 227

Query: 771  VTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFCATR 950
              LE D  TG  S + + LWR N+ EFV   R KAC+A  ++RLD  A  VL  M  ATR
Sbjct: 228  DALELDKETG-ASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATR 286

Query: 951  SIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQVGFLSRTGDHS 1127
            S     K + S PLS + I   V  S+ G  MT++R+R SL+Q+ C+P V   +      
Sbjct: 287  SEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAE----- 341

Query: 1128 GNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMN-GPMEQSKIAGKALLDARQ 1304
             +Y ++++ II++ Q  EVE+I   R+G ++ RIF +LS +   +E  KI+    ++ + 
Sbjct: 342  -SYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKD 400

Query: 1305 SLGVLYRLLKDGYLQLQEIARTNDHAPAKT-FYLWRVNESALKAQIVDDMYHAALNLVQR 1481
            +  +LY+L KD YLQ++++   N H   ++ F LW+V +  L   ++++MYH+ALNL  R
Sbjct: 401  TAKILYQLWKDEYLQMEKL---NLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLR 457

Query: 1482 LAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQA-----ERIRKIATILETS 1646
            +A                       + +Q II L   +R  A     ER+RK+  +LE+S
Sbjct: 458  VAY--------------------ELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESS 497

Query: 1647 LLKLDDSILLFDCF 1688
            L+KLDD+I+LF+ F
Sbjct: 498  LMKLDDAIMLFNDF 511


>ref|XP_006859054.1| hypothetical protein AMTR_s00068p00192690 [Amborella trichopoda]
            gi|548863166|gb|ERN20521.1| hypothetical protein
            AMTR_s00068p00192690 [Amborella trichopoda]
          Length = 515

 Score =  329 bits (843), Expect = 3e-87
 Identities = 214/561 (38%), Positives = 305/561 (54%), Gaps = 16/561 (2%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            MV+  A++LA +LI S FGDLV KVC CL+ KG L L  LA  TEL   QLK CLLVLIQ
Sbjct: 1    MVANQARQLAVDLITSDFGDLVAKVCKCLLKKGALPLARLAMETELPREQLKKCLLVLIQ 60

Query: 234  HNCVQGFKISSDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXXX 413
            HNCVQ F+   + G     + T+Y   LD ++HR+RFPKFL  +R               
Sbjct: 61   HNCVQAFQTKKEVGGRV-MSTTEYTALLDDIIHRLRFPKFLILIRDQFDEQCECLLGILL 119

Query: 414  XHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEP--VIPPRSS 587
             HGR +F+QL +R      E   G     +   F KLV A +VERCP +EP  V+     
Sbjct: 120  SHGRSTFEQLMQRLFENQPE-VSGDITDQMRTRFAKLVQARYVERCPASEPQLVLDSEEG 178

Query: 588  VDPKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYLPKRNDHHTGA------ 749
               KKK+               T+E+R   AA+  + ERF+F     ND  T +      
Sbjct: 179  TITKKKLK-----------EIVTDEERAVMAAAPLEAERFSFPTYSDNDASTESEIMADQ 227

Query: 750  ---FGKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGT 920
                G+KRK   +E D  + + + + + LWR N+ EFV   R KAC+A  R RLD+ A  
Sbjct: 228  SILVGEKRKRGVMEMDDDSIVLACEKDVLWRANFEEFVCSLRHKACIANVRPRLDIGAAV 287

Query: 921  VLDRMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVG 1100
            VL+ +   TR+     K + SAP S   I  A+  S  G    ++ +R +L Q+ +    
Sbjct: 288  VLEAILKETRAKEKQNKAEYSAPFSMNSIVQALLGSPHG---HLEHVRAALNQLGA---- 340

Query: 1101 FLSRTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLS-MNGPMEQSKIA 1277
              S TG   G+Y I++++II+  Q SE+E+IV  R+G+E  RIF +L+  NG +EQ +I 
Sbjct: 341  --SCTGATEGSYRISLKKIIEAAQNSEMESIVLKRYGSEGCRIFRLLADKNGMIEQKQIP 398

Query: 1278 GKALLDARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYH 1457
              AL++ +++  +LY+L+KD YLQ++E+A     A  K F LWRVN S+L+ +I++DMYH
Sbjct: 399  NLALIETKKAFELLYKLMKDDYLQMEEVA----SAQGKLF-LWRVNRSSLQEKILNDMYH 453

Query: 1458 AALNLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNR----QREQAERIRKI 1625
            AA NL QRLA                    ++++  +  +   NR    Q ++ +RIRK+
Sbjct: 454  AASNLCQRLAH-------------------ETTEEHELQLLKKNRITELQEKKVDRIRKV 494

Query: 1626 ATILETSLLKLDDSILLFDCF 1688
              ILE S+L+LDDSI+LF  F
Sbjct: 495  KPILEASILRLDDSIMLFHNF 515


>gb|EOY23205.1| RNA polymerase III subunit RPC82 family protein, putative isoform 1
            [Theobroma cacao]
          Length = 523

 Score =  324 bits (831), Expect = 7e-86
 Identities = 209/559 (37%), Positives = 303/559 (54%), Gaps = 14/559 (2%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            MV+++  K A  LI +HFGDLV KVC CL+ KG LTL  + +FTEL  SQ+KN LLVLIQ
Sbjct: 1    MVTQHGIKYAVLLITTHFGDLVAKVCECLLRKGPLTLQAIVRFTELTSSQVKNSLLVLIQ 60

Query: 234  HNCVQGFKISSDDGSATG-KAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXX 410
            HNCVQ F +        G K  +QY    + ++HR RFPKFL+ V               
Sbjct: 61   HNCVQAFILEQPGSHGDGAKLNSQYIALFNNIIHRWRFPKFLTIVSQKLDKQCVELIEAL 120

Query: 411  XXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVI--PPRS 584
              HGRL+  Q+ +RAK+   E  D   +A + E+F KL++AHFVERCP AEPV+  P   
Sbjct: 121  LLHGRLTLKQMSDRAKSAQNEGDDVILDA-VREAFIKLLNAHFVERCPAAEPVLTKPTEE 179

Query: 585  SVDPKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYL---------PKRNDH 737
                +K+VP+ A    K+    ET EQR+  AA+  +  RF                N+ 
Sbjct: 180  ETSARKRVPKSA----KILEGKETLEQRVLEAATPSEALRFLLVTRTEPAADGGKDENNS 235

Query: 738  HTGAFGKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAG 917
             +   GKKRK   LE ++  G  +D+   LWR N+ EF+ R R KA +   R+ LD  A 
Sbjct: 236  SSMTVGKKRKLDALESETE-GEATDEQVVLWRANFEEFIRRLRHKAFIENVRACLDDGAV 294

Query: 918  TVLDRMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQ 1094
             V+  M  ATR+     K + S PLS   I   V  S+EG  +T DR+R SL+Q+ C P 
Sbjct: 295  IVISAMLEATRTAEKKVKTENSVPLSLNSIYEEVIKSEEGRNITFDRVRASLVQLSCPPF 354

Query: 1095 VGFLSRTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGP-MEQSK 1271
            V  ++       +Y I+ ++II++ Q  EVE+IV  R+G ++ R+F +LS     +E  K
Sbjct: 355  VKAVNE------SYSIDFKKIIELAQNDEVESIVLKRYGRDAYRMFRLLSSTARLLETDK 408

Query: 1272 IAGKALLDARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDM 1451
            IA  A ++ + +  +LY+L KD YL ++++  T   A    F LW+VN++ L   ++D+M
Sbjct: 409  IADTAFVEKKDTTKILYKLWKDDYLHMEKLQLTG--ARQSQFLLWKVNKNTLWEHVLDEM 466

Query: 1452 YHAALNLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIAT 1631
            +HAALNL  R+A                       + +Q    L+  Q ++  R+RK+  
Sbjct: 467  FHAALNLSLRVA----------------------HELEQEKELLNLPQDKRVNRLRKVRL 504

Query: 1632 ILETSLLKLDDSILLFDCF 1688
            +LE+S +KLDD+I+LF  F
Sbjct: 505  LLESSQMKLDDAIMLFHDF 523


>ref|XP_006421933.1| hypothetical protein CICLE_v10004721mg [Citrus clementina]
            gi|568874593|ref|XP_006490399.1| PREDICTED: DNA-directed
            RNA polymerase III subunit RPC3-like isoform X1 [Citrus
            sinensis] gi|557523806|gb|ESR35173.1| hypothetical
            protein CICLE_v10004721mg [Citrus clementina]
          Length = 527

 Score =  306 bits (785), Expect = 2e-80
 Identities = 202/560 (36%), Positives = 299/560 (53%), Gaps = 15/560 (2%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            M++    K A  +I +HFGDLV KVC CL+ KG LT   + ++TEL+  Q+KN LLVLIQ
Sbjct: 1    MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60

Query: 234  HNCVQGFKISSDDGSATG-KAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXX 410
             NCVQ F     DG A G KA TQY +  D +LHR+RF KFL+ +               
Sbjct: 61   QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120

Query: 411  XXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSV 590
              HGRL+  Q+ +RAK+ S +  +  +   L E+  KLV AH+VERCP +EP++ P S  
Sbjct: 121  LEHGRLTLKQMFDRAKS-SEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179

Query: 591  D-PKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYL-------PKRNDHHTG 746
            + P +K    + ++I      ET EQ++  AA   +  RF+           K  + +  
Sbjct: 180  EGPARKKGSKSAKKIG---EPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV 236

Query: 747  AFGKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVL 926
              G+KRK+  LE D   G+ +D+   ++R N+  F+ R R K C+   R+ LD  A  VL
Sbjct: 237  TPGEKRKHDVLELD-ECGV-ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294

Query: 927  DRMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFL 1106
              M  AT S     K   S PLS   I   V  S+ G  MT+D +R SL+Q+     G L
Sbjct: 295  SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-----GEL 349

Query: 1107 SRTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGP-MEQSKIAGK 1283
            S     S +Y I+  +II++ Q  EVE++VS R+G ++ RIF +LS +G  +E  KI+  
Sbjct: 350  SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409

Query: 1284 ALLDARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAA 1463
              ++ + +  +LY+L KDGYL ++++  T   A    F LW+VN   L   ++D+M+HAA
Sbjct: 410  TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467

Query: 1464 LNLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQR-----EQAERIRKIA 1628
            LNL  R++                       D ++ ++ L   +R     ++  RIRK+ 
Sbjct: 468  LNLSLRVSY--------------------ELDREKELLNLPADKRTGPLQDRYNRIRKVR 507

Query: 1629 TILETSLLKLDDSILLFDCF 1688
             +LE+S +KLDD+ILLF  F
Sbjct: 508  ILLESSQMKLDDAILLFHDF 527


>gb|EXC19135.1| DNA-directed RNA polymerase III subunit RPC3 [Morus notabilis]
          Length = 564

 Score =  306 bits (783), Expect = 3e-80
 Identities = 209/597 (35%), Positives = 298/597 (49%), Gaps = 59/597 (9%)
 Frame = +3

Query: 75   KLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQHNCVQGF 254
            K A  LI SHFG+LV  VC  L+ KG LTL +L +FTEL P Q+KN LL+LIQHNCVQ F
Sbjct: 8    KFAVHLITSHFGNLVANVCENLLRKGPLTLQQLIRFTELTPLQIKNSLLILIQHNCVQPF 67

Query: 255  KISSDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXXXXHGRLSF 434
                          TQY +  D +LHR+RFPKFL  V                 HGRL+ 
Sbjct: 68   SSEQIGAGGNEVKVTQYLVLFDNILHRLRFPKFLEIVSEELDKNCGEILEGLLQHGRLTL 127

Query: 435  DQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSVDPKKKVPR 614
            +Q+ ERA       +D   +  + ESF+KL+++ FVERCP  EP + P +     K   R
Sbjct: 128  EQIYERA-------RDNAVQDAVRESFQKLLNSRFVERCPAPEPFVEPSTIKSSNK---R 177

Query: 615  GATRRIKLDVNFETEEQRIAAAASLPDVERFNFYLP---------KRNDHHTG-AFGKKR 764
            GA +  KLD   ETEEQR+ AAA+  D  RF+   P         K  D  +    G+KR
Sbjct: 178  GA-KSAKLDEVSETEEQRVLAAAASLDTLRFSILTPSGTEFDEDKKDGDSSSSMGVGEKR 236

Query: 765  KYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFCA 944
            K+   + D   G   +++  LWR N+ EF    R KAC+   R+RLDV A TVL  M  A
Sbjct: 237  KHGAADSDDAFGSNENEV-ILWRANFEEFTRYLRHKACIENVRARLDVGAATVLKAMLDA 295

Query: 945  TRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQVGFLSRTGD 1121
            TRS     K + S  LS + I   V  S+ G  +T+DR+R SL+Q+ CS      S T D
Sbjct: 296  TRSAEKKVKTENSVSLSMDTIFEEVMKSEAGRSLTLDRVRASLVQLGCSS-----SGTDD 350

Query: 1122 HSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGPMEQS-KIAGKALLDA 1298
                Y I++++II++ Q  EVE+IV  R+G ++ R+F +LS  G ++++ KIA    ++ 
Sbjct: 351  ---TYSIDLKQIIELAQKEEVESIVLRRYGRDAYRMFRLLSKAGLLQETDKIADMTFVEK 407

Query: 1299 RQSLGVLYRLLKDGYLQLQ----------------------------------------- 1355
            +++  +L +L KD YL ++                                         
Sbjct: 408  KEAPKILGKLWKDEYLHMEVEYFNLLIKFTLSSNMAICDVVDKPRLTLSGMSDLVLMDQN 467

Query: 1356 -EIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAALNLVQRLAXXXXXXXXXXXXXXX 1532
             EI          TFYLW+VN+  L   ++D+MYHAALNL  R+                
Sbjct: 468  KEIVNKFVVDRNTTFYLWKVNKPILWQHVLDEMYHAALNLSLRV---------------- 511

Query: 1533 XXXXAKSSDGKQPIITLSNRQR-----EQAERIRKIATILETSLLKLDDSILLFDCF 1688
                    D K+ ++T+   +R     ++ +R++     LE+SL+KLDD+++LF  F
Sbjct: 512  ----IHELDQKKELLTIPPEKRTGPLEKEFKRLKNAKFFLESSLMKLDDALMLFRHF 564


>ref|XP_006490400.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like isoform
            X2 [Citrus sinensis]
          Length = 512

 Score =  294 bits (753), Expect = 8e-77
 Identities = 196/560 (35%), Positives = 292/560 (52%), Gaps = 15/560 (2%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            M++    K A  +I +HFGDLV KVC CL+ KG LT   + ++TEL+  Q+KN LLVLIQ
Sbjct: 1    MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60

Query: 234  HNCVQGFKISSDDGSATG-KAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXX 410
             NCVQ F     DG A G KA TQY +  D +LHR+RF KFL+ +               
Sbjct: 61   QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120

Query: 411  XXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSV 590
              HGRL+  Q+ +RAK+ S +  +  +   L E+  KLV AH+VERCP +EP++ P S  
Sbjct: 121  LEHGRLTLKQMFDRAKS-SEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179

Query: 591  D-PKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYL-------PKRNDHHTG 746
            + P +K    + ++I      ET EQ++  AA   +  RF+           K  + +  
Sbjct: 180  EGPARKKGSKSAKKIG---EPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV 236

Query: 747  AFGKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVL 926
              G+KRK+  LE D   G+ +D+   ++R N+  F+ R R K C+   R+ LD  A  VL
Sbjct: 237  TPGEKRKHDVLELD-ECGV-ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294

Query: 927  DRMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFL 1106
              M  AT S     K   S PLS   I   V  S+ G  MT+D +R SL+Q         
Sbjct: 295  SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQ--------- 345

Query: 1107 SRTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGP-MEQSKIAGK 1283
                       ++  +II++ Q  EVE++VS R+G ++ RIF +LS +G  +E  KI+  
Sbjct: 346  -----------LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394

Query: 1284 ALLDARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAA 1463
              ++ + +  +LY+L KDGYL ++++  T   A    F LW+VN   L   ++D+M+HAA
Sbjct: 395  TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452

Query: 1464 LNLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQR-----EQAERIRKIA 1628
            LNL  R++                       D ++ ++ L   +R     ++  RIRK+ 
Sbjct: 453  LNLSLRVSY--------------------ELDREKELLNLPADKRTGPLQDRYNRIRKVR 492

Query: 1629 TILETSLLKLDDSILLFDCF 1688
             +LE+S +KLDD+ILLF  F
Sbjct: 493  ILLESSQMKLDDAILLFHDF 512


>ref|XP_002985756.1| hypothetical protein SELMODRAFT_424745 [Selaginella moellendorffii]
            gi|300146665|gb|EFJ13334.1| hypothetical protein
            SELMODRAFT_424745 [Selaginella moellendorffii]
          Length = 521

 Score =  294 bits (753), Expect = 8e-77
 Identities = 196/559 (35%), Positives = 305/559 (54%), Gaps = 14/559 (2%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            M +  A KLAC LI+  FGDLV  VC CL+ +G L+LPE+  FT L   QL +CLLVLIQ
Sbjct: 1    MAAGYAGKLACFLIKDQFGDLVHSVCECLISRGQLSLPEIGSFTLLARPQLASCLLVLIQ 60

Query: 234  HNCVQGFKISSDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVR-XXXXXXXXXXXXXX 410
            HNCVQ FK+  +D     +A  +Y   +D ++ R  FP F+  +R               
Sbjct: 61   HNCVQAFKVLDEDNL---EARLRYTAIVDHIVLRACFPLFVELIREKTGNDQSEELALGL 117

Query: 411  XXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSV 590
              HGRL+ +QL +R  A+ +  +D   ++   E+F  L+    VERCP  E V+    + 
Sbjct: 118  LQHGRLTLEQLIKR-DAECSNSEDA--QSQFMEAFTNLLQHKLVERCPRPEAVLGFSDNA 174

Query: 591  D---PKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERF----NFYLPKRNDHHTGA 749
                P KK  RG++++  L +NFET+ +R+ AAA+  + ERF     + + +     T +
Sbjct: 175  GDGRPAKKA-RGSSKKRSLPLNFETQVRRVLAAAAPMEAERFRGPSRWIMDEDAAASTPS 233

Query: 750  FGKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLD 929
             G+KRK+  L + S      D+ E LWRVN+ E V   R KAC           A TV++
Sbjct: 234  TGEKRKHGALWDSS----SMDEKEVLWRVNFEECVKLLRHKACACHVNFSFGSDAKTVVE 289

Query: 930  RMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFLS 1109
             M  ATR   TT K   S  L+  +I   +RS       T   +R +L +M   + GF++
Sbjct: 290  AMLEATRKTETTVKAAFSDALTLNDIL-ILRSD-----WTAPVVRNALKRMV--EEGFIN 341

Query: 1110 RTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGPMEQSKIAGKAL 1289
              GD   +Y + +++I+++ + +EVE+IVS RFG  S RI  +LS  G  EQ  I+ K L
Sbjct: 342  SVGDAGSHYTVAMQKIVELARKTEVESIVSQRFGKPSSRILRLLSKKGGSEQKAISEKCL 401

Query: 1290 LDARQSLGVLYRLLKDGYLQLQEIART-NDHAPAKTFYLWRVNESALKAQIVDDMYHAAL 1466
            +  +++  +LY+L+K+ Y++LQE+ ++  D APA+TFYLW V+ S L + +++DMYHAA 
Sbjct: 402  IPDKEAWQLLYQLMKERYIELQEVPKSAGDRAPARTFYLWHVDFSKLSSVVLEDMYHAAY 461

Query: 1467 NLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPII-----TLSNRQREQAERIRKIAT 1631
            NL +++                     +    K+ +I     +LSN Q+++ +R++ I  
Sbjct: 462  NLHRQIEH-------------------RLEHEKELLIIPTTGSLSNEQQQKLDRLQSIVK 502

Query: 1632 ILETSLLKLDDSILLFDCF 1688
            ILE S+ KL ++I+L+D +
Sbjct: 503  ILEVSIFKLMNTIMLYDFY 521


>gb|EMJ20202.1| hypothetical protein PRUPE_ppa004195mg [Prunus persica]
          Length = 524

 Score =  288 bits (738), Expect = 5e-75
 Identities = 194/548 (35%), Positives = 284/548 (51%), Gaps = 10/548 (1%)
 Frame = +3

Query: 75   KLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQHNCVQGF 254
            K A  +I S+FG+LV KVC  L+ +G L+L +L  FTEL P Q+KN LL+LIQHNCVQ F
Sbjct: 9    KYAVHIITSNFGNLVAKVCEILLRRGHLSLKQLIGFTELTPQQVKNSLLILIQHNCVQPF 68

Query: 255  KISSDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXXXXHGRLSF 434
                 +G       TQY    D ++HR RF KFL+ V                 +GRL+ 
Sbjct: 69   SFDQSEGPKV----TQYIALFDNIIHRGRFAKFLAVVSQELDTDRELILKDLLENGRLTL 124

Query: 435  DQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSVD-PKKKVP 611
             Q+ E A++ S  + D  ++  ++ESF KLV+AHFVERCP  EPV+   +  + P KK  
Sbjct: 125  KQIIEGAES-SKSQGDSADKDSVQESFLKLVNAHFVERCPAPEPVLGQATKQEGPAKK-- 181

Query: 612  RGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYLPKRNDHHTGAFGKKRKYVTLEEDS 791
            RGA     ++V  ET EQR+ AAA+ P+  RF+  +    D    A G K   +++ E  
Sbjct: 182  RGAKSAKMVEVP-ETIEQRVIAAAAPPEAIRFSIMI----DSEADAPGGKSDNMSVGEKV 236

Query: 792  RTGM-----PSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFCATRSI 956
              G+        D   LWR N+ EF+   R KACV   R+RLD  A  VL  M  ATR+ 
Sbjct: 237  GIGIVISIYQGYDEVVLWRANFEEFIRCLRHKACVENVRARLDDEAAVVLRAMLKATRTA 296

Query: 957  ATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFLSRTGDHSGNY 1136
                K + S PLS   I   V +S+ G  +T+ R+R SL  +C        R  D   +Y
Sbjct: 297  EKKVKTENSVPLSLNTIYEEVINSEAGRSLTMGRVRDSLSGLCDSS---QERDVDEDESY 353

Query: 1137 IINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNG-PMEQSKIAGK---ALLDARQ 1304
              ++++I+++ Q  EVE IV  R+G ++  +F +LS+ G P+E  KI+     +L++  +
Sbjct: 354  SADLKKILELAQDDEVELIVLKRYGKDAYTMFRILSLAGRPIETDKISDMSQLSLVEKNE 413

Query: 1305 SLGVLYRLLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAALNLVQRL 1484
            +  +LY L KD YL ++ +  T   A    F +WRV++  +   ++D+M+H ALNL  RL
Sbjct: 414  TPKILYNLWKDDYLHMERLVVTG--ARQSQFLVWRVDKPIIWKHVLDEMFHTALNLSLRL 471

Query: 1485 AXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIATILETSLLKLDD 1664
            A                           P   L     +Q +  R +  +L+ SLLKLDD
Sbjct: 472  ACEEERFKEITDL---------------PAHKLLGEMAKQWQLYRNVILVLQASLLKLDD 516

Query: 1665 SILLFDCF 1688
            +++LF  F
Sbjct: 517  ALMLFHDF 524


>ref|XP_002321920.2| RNA polymerase 3 subunit RPC82 family protein [Populus trichocarpa]
            gi|550322612|gb|EEF06047.2| RNA polymerase 3 subunit
            RPC82 family protein [Populus trichocarpa]
          Length = 520

 Score =  287 bits (735), Expect = 1e-74
 Identities = 196/557 (35%), Positives = 301/557 (54%), Gaps = 12/557 (2%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            MVS+   K A  +I +HFG LV KVC+CL+ KG L L E+ ++TEL+ + ++NCLLVLIQ
Sbjct: 1    MVSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQ 60

Query: 234  HNCVQGFKISSDDG-SATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXX 410
            HNC+Q F +  + G     K  + Y +  D VLHR+RF KF++ V               
Sbjct: 61   HNCLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETL 120

Query: 411  XXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSV 590
              HGRLS +Q+ +  + +S+    G  EA L+E+  KLV A +VERCP++EP +   S  
Sbjct: 121  LQHGRLSSEQIFDGFRDRSS---SGGMEA-LQENMHKLVMARYVERCPISEPFLALPSEE 176

Query: 591  DPKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYL--------PKRNDHHTG 746
            +      RGA +  K  +  ET EQR+  AA  P+  RF+F L         K  ++ + 
Sbjct: 177  EAAPVRRRGA-KSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSS 235

Query: 747  AFGKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVL 926
              G KRK   LE D   G+ +D   ALWRVN+ EF+ R R K C+   R+RLD  A TV 
Sbjct: 236  NIGDKRKLDALESDIDGGV-ADKQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAATVF 294

Query: 927  DRMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFL 1106
              M  A+RS     K  +S PLS+  I   V  S++G  MT+D + + L+ + S      
Sbjct: 295  TAMLDASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVLVGLSSSPP--F 352

Query: 1107 SRTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNG-PMEQSKIAGK 1283
             R  D+S  Y I+ +  I+V QT   E+IV  ++G ++ R+F +LS  G  +E  KI+  
Sbjct: 353  VRVVDNS--YSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMFRLLSKAGCLLETDKISDS 408

Query: 1284 ALLDARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAA 1463
              L+ +++  +L ++ +  YLQ++++      A    F LW+VN   L+ +++DDM+HAA
Sbjct: 409  IFLEKKETANILSKMWQGDYLQMEKLI-----AGPTQFLLWKVNMINLRERVLDDMFHAA 463

Query: 1464 LNLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITL--SNRQREQAERIRKIATIL 1637
            LNL  R+A                       + ++ I+ L      +E+ E+++K+  +L
Sbjct: 464  LNLSLRVAY--------------------ELEQQKEILHLGVDGPMKEKYEKLKKVRFLL 503

Query: 1638 ETSLLKLDDSILLFDCF 1688
            E+S +KLDD+I++F  F
Sbjct: 504  ESSRMKLDDAIMIFHDF 520


>ref|XP_004168254.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Cucumis
            sativus]
          Length = 518

 Score =  280 bits (717), Expect = 1e-72
 Identities = 194/548 (35%), Positives = 286/548 (52%), Gaps = 10/548 (1%)
 Frame = +3

Query: 75   KLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQHNCVQGF 254
            K A  ++ +HFG+LV KVC  L+ KG LTL  L +FTEL PSQ+ N LL+LIQHNCVQ F
Sbjct: 9    KYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQHNCVQAF 68

Query: 255  KISSDDGSATGKAPTQYAIFLDTVLHRMRFPKF--LSTVRXXXXXXXXXXXXXXXXHGRL 428
               +D G A+ K  T Y      +LHRMRF KF  +++ +                +GRL
Sbjct: 69   ---TDFGDAS-KDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEGLLQNGRL 124

Query: 429  SFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSVDPKKKV 608
            S +QL ER     AE ++ P    + +S  KL++AHFVERCP  EP + P+    P +K 
Sbjct: 125  SMEQLVER-----AESRNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEPPPRK- 178

Query: 609  PRGATRRIKLDVNFETEEQRIAAAASLPDVERFNF----YLPKRNDHHTGAFGKKRKYVT 776
             RGA +  K+    ET EQR+  AA   +V RF+        ++++HH+   G+KRK+  
Sbjct: 179  -RGA-KAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQKRKHDD 236

Query: 777  LEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFCATRSI 956
            LE    +G    D   LWR NY EF+   R KAC+   RS+ D     VL  +  ATRS 
Sbjct: 237  LEIAQDSG--DADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSS 294

Query: 957  ATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFLSRTGDHSGNY 1136
                K + + PLS + I   V  ++ G  MT+DR+  SL  +  P +       D+  + 
Sbjct: 295  EKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGI------DDYKISM 348

Query: 1137 I--INIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGPM-EQSKIAGKALLDARQS 1307
               ++   II+  QT EVE+IV  R+G ++ R+F  LS  G + E  KI+  + +D  ++
Sbjct: 349  FTTVDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEA 408

Query: 1308 LGVLYRLLKDGYLQLQEIARTNDHAPAKTF-YLWRVNESALKAQIVDDMYHAALNLVQRL 1484
              +LYRL KD YL ++++A T    P  +   LWRV+   L   ++D+MYHA+LNL  RL
Sbjct: 409  PKILYRLWKDEYLYMEKVALT---VPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRL 465

Query: 1485 AXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIATILETSLLKLDD 1664
            A                       +  +P++       ++      +  +L +SL+KLDD
Sbjct: 466  A--------HEIEENKELLSLPKDNNNKPLV-------KKMHHFENVRNLLRSSLVKLDD 510

Query: 1665 SILLFDCF 1688
            +++LF  F
Sbjct: 511  ALMLFHDF 518


>emb|CBI26210.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  280 bits (717), Expect = 1e-72
 Identities = 191/553 (34%), Positives = 279/553 (50%), Gaps = 15/553 (2%)
 Frame = +3

Query: 75   KLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQHNCVQGF 254
            KLA  LI + FGD   KVC+CL+ KG L L ++ +  +L+P Q+K  L VLIQHNCVQ F
Sbjct: 8    KLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQHNCVQAF 67

Query: 255  KISSDDGSATGKAP-TQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXXXXHGRLS 431
             +  + G   G    TQY +  D +LHRMRFPK L+ V                 HG L+
Sbjct: 68   AMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAFLKHGWLT 127

Query: 432  FDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEP-VIPPRSSVDPKKKV 608
              Q+ +R  +   E     ++A L  SF KLV+AH+VERCP  +P ++PP     P +K 
Sbjct: 128  LQQILDRVPSNQNEGNCTVQDA-LRGSFTKLVNAHYVERCPAPDPFLVPPDEEKTPARKH 186

Query: 609  PRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYLPKRNDHHTG---------AFGKK 761
               + + ++     E  EQ   A A+    + F        D +             GKK
Sbjct: 187  DANSAKAVE---ELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIGNPPGVVIGKK 243

Query: 762  RKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFC 941
            RK   L+ D+ +G  S+  +  WR NY E V   R KAC+   R+RLD  A  VL  M  
Sbjct: 244  RKQDALKLDTESGAASEK-DVPWRANYKELVCHLRHKACIENVRARLDSGAAIVLSAMLE 302

Query: 942  ATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQVGFLSRTG 1118
            AT+S     K++ S  LS   IT AV  S+ G  MT++RIR SL+Q+ C P      RT 
Sbjct: 303  ATQSAEKNVKEEISVLLSISTITEAVMQSEAGCSMTLERIRASLVQLGCHPNGVGADRT- 361

Query: 1119 DHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMN-GPMEQSKIAGKALLD 1295
                 Y I++++II++ Q  EVE++V  R+G E+ RIF +LS +  P+E +KI+    ++
Sbjct: 362  -----YNIDLKKIIELAQNDEVESMVLKRYGREAHRIFRLLSKSCCPLETTKISDTTFIE 416

Query: 1296 ARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAALNLV 1475
             +++  +LY+L KD  L +++I    + +    F LW+V +      I+D+MYHAALNL 
Sbjct: 417  KKEAAKILYKLWKDECLHMEKIVL--NESRQSQFMLWKVKKDTFWRHILDEMYHAALNL- 473

Query: 1476 QRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQA--ERIRKIATILETSL 1649
                                            II L   +   A  ER  ++A +L+ SL
Sbjct: 474  -----------------------------SIQIIELRRDKHVGALRERDVRLAILLQASL 504

Query: 1650 LKLDDSILLFDCF 1688
            +KLDD+++LF  F
Sbjct: 505  MKLDDALMLFHDF 517


>ref|XP_004140835.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Cucumis
            sativus]
          Length = 518

 Score =  279 bits (713), Expect = 4e-72
 Identities = 194/548 (35%), Positives = 285/548 (52%), Gaps = 10/548 (1%)
 Frame = +3

Query: 75   KLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQHNCVQGF 254
            K A  ++ +HFG+LV KVC  L+ KG LTL  L +FTEL PSQ+ N LL+LIQHNCVQ F
Sbjct: 9    KYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQHNCVQAF 68

Query: 255  KISSDDGSATGKAPTQYAIFLDTVLHRMRFPKF--LSTVRXXXXXXXXXXXXXXXXHGRL 428
               +D G A  K  T Y      +LHRMRF KF  +++ +                +GRL
Sbjct: 69   ---TDFGDAP-KDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEGLLQNGRL 124

Query: 429  SFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSVDPKKKV 608
            S +QL ER     AE ++ P    + +S  KL++AHFVERCP  EP + P+    P +K 
Sbjct: 125  SMEQLVER-----AESRNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEPPPRK- 178

Query: 609  PRGATRRIKLDVNFETEEQRIAAAASLPDVERFNF----YLPKRNDHHTGAFGKKRKYVT 776
             RGA +  K+    ET EQR+  AA   +V RF+        ++++HH+   G+KRK+  
Sbjct: 179  -RGA-KAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQKRKHDD 236

Query: 777  LEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFCATRSI 956
            LE    +G    D   LWR NY EF+   R KAC+   RS+ D     VL  +  ATRS 
Sbjct: 237  LEIAQDSG--DADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSS 294

Query: 957  ATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFLSRTGDHSGNY 1136
                K + + PLS + I   V  ++ G  MT+DR+  SL  +  P +       D+  + 
Sbjct: 295  EKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGM------DDYKISM 348

Query: 1137 I--INIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGPM-EQSKIAGKALLDARQS 1307
               ++   II+  QT EVE+IV  R+G ++ R+F  LS  G + E  KI+  + +D  ++
Sbjct: 349  FTTVDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEA 408

Query: 1308 LGVLYRLLKDGYLQLQEIARTNDHAPAKTF-YLWRVNESALKAQIVDDMYHAALNLVQRL 1484
              +LYRL KD YL ++++A T    P  +   LWRV+   L   ++D+MYHA+LNL  RL
Sbjct: 409  PKILYRLWKDEYLYMEKVALT---VPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRL 465

Query: 1485 AXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIATILETSLLKLDD 1664
            A                       +  +P++       ++      +  +L +SL+KLDD
Sbjct: 466  A--------HEIEENKELLSLPKDNNNKPLV-------KKMHHFENVRNLLRSSLVKLDD 510

Query: 1665 SILLFDCF 1688
            +++LF  F
Sbjct: 511  ALMLFHDF 518


>ref|XP_006363319.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc3-like [Solanum
            tuberosum]
          Length = 525

 Score =  278 bits (711), Expect = 6e-72
 Identities = 194/559 (34%), Positives = 287/559 (51%), Gaps = 14/559 (2%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            MVS +  KLA  LI S+FGDL  KVC+CL+ +G  TL ++   TEL  + +KNCLLVLI 
Sbjct: 1    MVSPHGIKLAVYLISSYFGDLNAKVCDCLLRRGTQTLYQVVSSTELTRTNVKNCLLVLIH 60

Query: 234  HNCVQGFKISSDDG-SATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXX 410
            HNCVQ F +    G     K  TQY    D ++H++RFPKF+  V               
Sbjct: 61   HNCVQAFALQQPGGFGEEPKVITQYMALFDNIIHKLRFPKFIEIVSEEMGKECEEIFEGL 120

Query: 411  XXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSV 590
              HGRL+  ++ ER K  S +     + A   +SF  LV+A FVERCP  +P++ P ++ 
Sbjct: 121  LQHGRLTLTEIIERYKEASKQGDSSADAA--RDSFNSLVNARFVERCPAPDPLLEPPAAE 178

Query: 591  DPKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERF------NFYLPKRNDHHTGA- 749
            +   K  RGA       +  +T EQ+  AAA+  +  RF      N  + + +   T   
Sbjct: 179  ETAAK-KRGAK---SAKIQAQTMEQQALAAAAPMESMRFLVEDIWNDSVERADKRTTDVK 234

Query: 750  FGKKRKYVTLE---EDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGT 920
             G KRK   LE   +DS TG      E LWR N+ EF+ R R KACVA  + R++  A  
Sbjct: 235  CGMKRKQGDLESNTKDSATGKK----EVLWRANFEEFIRRLRHKACVANVKVRVNNDAAV 290

Query: 921  VLDRMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQV 1097
            VL      +R   T  + D S P S   I + V   + GLGM ++RIR SL  + C   +
Sbjct: 291  VLAATLELSRHSETKLRIDNSVPQSINAIYDEVIKREGGLGMDLERIRASLDDLGCEAPL 350

Query: 1098 GFLSRTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLS-MNGPMEQSKI 1274
              +  T      Y ++++ II+  +  EVE+IV  R+G E+ R+F +LS  +  +E  KI
Sbjct: 351  MEIDET------YSVDLKNIIEQARIEEVESIVLKRYGREAYRMFRLLSKADRLVETDKI 404

Query: 1275 AGKALLDARQSLGVLYRLLKDGYLQLQE-IARTNDHAPAKTFYLWRVNESALKAQIVDDM 1451
            +    ++ + ++ +L++L KD YL++++ IAR    A    F LW++N+ +L   I+D+M
Sbjct: 405  SDTTFVEKKDAVKILFKLWKDDYLEMKKVIARA---AKQSEFILWKINKQSLWEHILDEM 461

Query: 1452 YHAALNLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIAT 1631
            YHAALNL  R+                          + P   L      +  R+RK+  
Sbjct: 462  YHAALNLRLRITHEKEQEKEIL---------------QMPKDKLVGELGNKYMRLRKVCI 506

Query: 1632 ILETSLLKLDDSILLFDCF 1688
            +LE+SL+ LDDS++LF  F
Sbjct: 507  VLESSLMNLDDSLMLFHDF 525


>ref|XP_004240730.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc3-like [Solanum
            lycopersicum]
          Length = 525

 Score =  277 bits (709), Expect = 1e-71
 Identities = 190/556 (34%), Positives = 290/556 (52%), Gaps = 11/556 (1%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            MVS +  KLA  LI S+FG+L  KVC+CL+ +G  TL ++   TEL+   +KNCLLVLI 
Sbjct: 1    MVSPHGIKLAVYLISSYFGELNAKVCDCLLRRGTQTLHQVVSSTELSRKNVKNCLLVLIH 60

Query: 234  HNCVQGFKISSDDG-SATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXX 410
            HNCVQ F I    G     K  TQY    D ++H++RFPKF+  V               
Sbjct: 61   HNCVQAFAIRQPGGFGEEAKIITQYMALFDNIIHKLRFPKFIEIVSEELGKECEEILEWL 120

Query: 411  XXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSV 590
              HGRLS  Q+  + K Q++++ D   +A  ++SF +LV+A FVERCP  +P++ P +  
Sbjct: 121  LQHGRLSLSQIIVKYK-QASKQGDSSADAA-QDSFNRLVNARFVERCPAPDPLLEPPAEE 178

Query: 591  DPKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERF------NFYLPKRNDHHTGA- 749
            +   K  RGA       +  +T EQ+  AAA+  +  RF      N  + K +   T   
Sbjct: 179  ETAAK-KRGAK---SAKIQAQTMEQQALAAAAPMESMRFLVENIWNDSVEKADKRTTDVK 234

Query: 750  FGKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLD 929
             G KRK   LE +++     +  E LWR N+ EF+ R R KACVA  + R++  A  VL 
Sbjct: 235  CGMKRKQEDLESNTKDPATGEK-EVLWRANFEEFIRRLRHKACVANVKVRVNNDAAIVLA 293

Query: 930  RMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQVGFL 1106
                 +R   T  + D S P S   I + V   + GLGM ++RIR SL  + C   +  +
Sbjct: 294  ATLELSRHSETKLRIDNSVPQSINAIYDEVIKREGGLGMDLERIRASLDDLGCEAPLMEI 353

Query: 1107 SRTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLS-MNGPMEQSKIAGK 1283
              T      Y ++++ II+  +  EVE+IV  R+G E+ R+F +LS  +  +E  KI+  
Sbjct: 354  DET------YSVDLKNIIEQARIEEVESIVLKRYGREAYRMFRLLSKADRLVETDKISDT 407

Query: 1284 ALLDARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKT-FYLWRVNESALKAQIVDDMYHA 1460
              ++ + ++ +L++L KD YL+++++      AP ++ F LW++N+ +L   I+D+MYHA
Sbjct: 408  TFVEKKDAVKILFKLWKDDYLEMKKVIA---RAPKQSEFILWKINKQSLWEHILDEMYHA 464

Query: 1461 ALNLVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIATILE 1640
            ALNL  R                           + P   L      +  R+RK+  +LE
Sbjct: 465  ALNLRLRTTHEKEQEKEIL---------------QMPKDKLVGELGNKYMRLRKVCIVLE 509

Query: 1641 TSLLKLDDSILLFDCF 1688
            +SL+ LDDS++LF  F
Sbjct: 510  SSLMNLDDSLMLFHDF 525


>ref|XP_002974451.1| hypothetical protein SELMODRAFT_414649 [Selaginella moellendorffii]
            gi|300158049|gb|EFJ24673.1| hypothetical protein
            SELMODRAFT_414649 [Selaginella moellendorffii]
          Length = 504

 Score =  276 bits (705), Expect = 3e-71
 Identities = 179/486 (36%), Positives = 271/486 (55%), Gaps = 9/486 (1%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            M +  A KLAC LI+  FGDLV  VC CL+ +G L+LPE+  FT L    L +CLLVLIQ
Sbjct: 1    MAAGYAGKLACFLIKDQFGDLVHSVCECLISRGQLSLPEIGSFTLLARPHLASCLLVLIQ 60

Query: 234  HNCVQGFKISSDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVR-XXXXXXXXXXXXXX 410
            HNCVQ FK+  +D     +A  +Y   +D V+ R  FP FL  +R               
Sbjct: 61   HNCVQAFKVLDEDNL---EARLRYTAIVDHVVLRACFPLFLELIREKTGNDQSEELALGL 117

Query: 411  XXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSV 590
              HGRL+ +QL +R  A+ +  +D   ++   E+F  L+    VERCP  E V+    + 
Sbjct: 118  LQHGRLTLEQLIKR-DAECSNSEDA--QSQFMEAFTNLLQHKLVERCPRPEAVLGFSDNA 174

Query: 591  D---PKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERF----NFYLPKRNDHHTGA 749
                P KK  RG++++  L +NFET+ +R+ AAA+  + ERF     + + +     T +
Sbjct: 175  GDGRPAKKA-RGSSKKRSLPLNFETQVRRVLAAAAPMEAERFRGPSRWIMDEDAAASTPS 233

Query: 750  FGKKRKYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLD 929
              +KRK+  L + S      D+ E LWRVN+ E V   R KAC +         A TV++
Sbjct: 234  TSEKRKHGALWDSS----SMDEKEVLWRVNFEECVKLLRHKACASHVNFSFGSDAKTVVE 289

Query: 930  RMFCATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFLS 1109
             M  ATR   TT K   S  L+  +I   +RS       T   +R +L +M   + GF++
Sbjct: 290  AMLEATRKTETTVKAAFSDALTLNDIL-ILRSD-----WTAPVVRNALKRMV--EEGFIN 341

Query: 1110 RTGDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGPMEQSKIAGKAL 1289
              GD   +Y + +++I+++ + +EVE+IVS RFG  S RI  +LS  G  EQ  I+ K L
Sbjct: 342  SVGDAGSHYTVAMQKIVELARKTEVESIVSQRFGKPSSRILRLLSKKGGSEQKAISEKCL 401

Query: 1290 LDARQSLGVLYRLLKDGYLQLQEIART-NDHAPAKTFYLWRVNESALKAQIVDDMYHAAL 1466
            +  +++  +LY+L+K+ Y++LQE+ ++  D APA+TFYLW V+ S L + +++DMYHAA 
Sbjct: 402  IPDKEAWQLLYQLMKERYIELQEVPKSAGDRAPARTFYLWHVDFSKLSSVVLEDMYHAAY 461

Query: 1467 NLVQRL 1484
            NL +++
Sbjct: 462  NLHRQI 467


>ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative [Ricinus
            communis] gi|223549895|gb|EEF51382.1| DNA-directed RNA
            polymerase III 62 kDa polypeptide, putative [Ricinus
            communis]
          Length = 485

 Score =  273 bits (698), Expect = 2e-70
 Identities = 169/474 (35%), Positives = 262/474 (55%), Gaps = 3/474 (0%)
 Frame = +3

Query: 75   KLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQHNCVQGF 254
            K A  +I +HFG+LV KVC CL+ KG LT+ ++ +FTELN +Q+KN LLVLIQHNCVQ +
Sbjct: 9    KYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHNCVQAY 68

Query: 255  KISSDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXXXXHGRLSF 434
            + S DD   T    T Y    D +LHR+RF KFL+ +                 HGRL+ 
Sbjct: 69   R-SGDDLKLT----THYIALFDNILHRVRFSKFLAIISQDFHKSCVDIVEGLLEHGRLTV 123

Query: 435  DQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRSSVDPKKKVPR 614
             Q+ +RA ++++   D      ++E+  KLV+  ++E CP +EPV+ P +  + + K  +
Sbjct: 124  KQIVDRANSRNSIGLD-----SVKENLCKLVNGRYIEHCPASEPVLAPPTEEEDRAK--K 176

Query: 615  GATRRIKLDVNFETEEQRIAAAASLPDVERFNFYLPK--RNDHHTGAFGKKRKYVTLEED 788
             + +  K+ +  ET EQR+ A A   D +RF+  L    ++D          K+V     
Sbjct: 177  RSAKSAKIVIESETLEQRVLAVAVPMDAKRFSVDLDTELKDDAENDQNKSSDKHV----- 231

Query: 789  SRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFCATRSIATTG 968
                  ++D   LWR N+ EF+ R R KAC+   R RLD  A  VL  M  A+R+     
Sbjct: 232  --GDKVAEDQVVLWRANFEEFIRRLRHKACIENVRGRLDDGAAIVLSAMLDASRTEEKKV 289

Query: 969  KQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQMCSPQVGFLSRTGDHSGNYIINI 1148
            K  +S PLS   I   V  ++ G  MT+D I ++L Q+ SP   F+    D    Y I+ 
Sbjct: 290  KTASSVPLSLNSIYEEVIKNENGRNMTIDHIESALGQLGSPP-PFVKAVED---LYTIDF 345

Query: 1149 RRIIQVTQTSEVEAIVSNRFGAESRRIFSMLS-MNGPMEQSKIAGKALLDARQSLGVLYR 1325
            + II+  Q+ EVE+IV  R+G ++ RIF +LS  +  +E  KI+    ++ +++  +LY+
Sbjct: 346  KHIIEAAQSDEVESIVLKRYGRDAYRIFRLLSKASRLLETDKISDTIFVEKKETTKILYK 405

Query: 1326 LLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAALNLVQRLA 1487
            + +D YL ++++      A   TF LW+VN+  L  Q++D+M+HA+LNL  R+A
Sbjct: 406  MWQDDYLLMEKLV-----AGTATFLLWKVNKHTLWKQVLDEMFHASLNLSIRVA 454


>ref|XP_006589539.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 518

 Score =  271 bits (692), Expect = 1e-69
 Identities = 181/550 (32%), Positives = 283/550 (51%), Gaps = 5/550 (0%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            MV+++  K A  LI  HFG +V KVC  L   G LTL +L ++T+L   Q++N LLVL+Q
Sbjct: 1    MVTQHGIKFAVHLITKHFGKIVAKVCENLFIHGPLTLDQLVRYTDLTKDQVRNSLLVLVQ 60

Query: 234  HNCVQGFKIS---SDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXX 404
            HNCVQ F  +    DD +   +  TQY +  D++LHR+RFPKFL  V             
Sbjct: 61   HNCVQAFVSAPQDDDDDADRLRVRTQYLVLFDSILHRLRFPKFLEIVSRKLDEECVKLLD 120

Query: 405  XXXXHGRLSFDQLKERAKAQSAERKDGPEEAGLEESFRKLVDAHFVERCPVAEPVIPPRS 584
                 GRL+  Q+ +R   +S  +++      + E+  KL+ A FVERCP  EPV+    
Sbjct: 121  GLLRDGRLTLKQMVDR---ESQRKENAVPTKVVRETLCKLLTARFVERCPAPEPVVSTSF 177

Query: 585  SVDPKKKVPRGATRRIKLDVNFETEEQRIAAAASLPDVERFNFYLPKRNDHHTGAFGKKR 764
                 +K  RGA +  K+    ET EQR+  AA   DV RF+     R            
Sbjct: 178  KETTTRK--RGA-KSAKIFEAPETLEQRVVDAAVPGDVIRFSLAADTRCSVDRETNSDDA 234

Query: 765  KYVTLEEDSRTGMPSDDIEALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMFCA 944
            + +++EE+      + + + LWR N+ EF+   R K  +   R++ D    TVL  +  A
Sbjct: 235  QMISVEEE-----VAKEGQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEA 289

Query: 945  TRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQVGFLSRTGD 1121
            TRS+    K + S PLS + I   V  +  G  MTVDRIR SL+Q+ CSP +        
Sbjct: 290  TRSVQKKVKTENSVPLSLDTIITEVMKTDTGRTMTVDRIRASLVQLGCSPSMIL------ 343

Query: 1122 HSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGPM-EQSKIAGKALLDA 1298
               +Y I++++II+  +  EVE+IV  R+G +  RIF +L+ +    +  +IA   L++ 
Sbjct: 344  -EESYSIDLKKIIEPARNEEVESIVLKRYGTDGYRIFRLLAKDCCFHDTDQIAASTLVEK 402

Query: 1299 RQSLGVLYRLLKDGYLQLQEIARTNDHAPAKTFYLWRVNESALKAQIVDDMYHAALNLVQ 1478
            +++  +LY+L KD YL ++++  T   A   T  +W+VN+  L   ++D+MYHAALNL  
Sbjct: 403  KEASKLLYKLWKDNYLYMEKVGATVG-AKQTTILMWKVNKPLLWEYVLDEMYHAALNLSL 461

Query: 1479 RLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIATILETSLLKL 1658
            R+A                        G  P+       +++ +++  +  +L +SL+KL
Sbjct: 462  RMA------FEQEKDEELLKVPKDKRQGPGPL-------QKKYKKLLNVWLLLGSSLMKL 508

Query: 1659 DDSILLFDCF 1688
            DD+++LF  F
Sbjct: 509  DDALMLFHDF 518


>ref|XP_004489521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like isoform
            X1 [Cicer arietinum] gi|502119266|ref|XP_004496559.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC3-like [Cicer arietinum]
          Length = 513

 Score =  264 bits (674), Expect = 1e-67
 Identities = 188/553 (33%), Positives = 281/553 (50%), Gaps = 8/553 (1%)
 Frame = +3

Query: 54   MVSRNAQKLACELIQSHFGDLVGKVCNCLVYKGMLTLPELAKFTELNPSQLKNCLLVLIQ 233
            MVS+   K A  LI +HFG +V KVC  L+ +G LTL  L +FTEL+   +KN LLVLIQ
Sbjct: 1    MVSQWGIKFAVHLITNHFGKIVAKVCETLLRQGPLTLELLIRFTELSKEHVKNSLLVLIQ 60

Query: 234  HNCVQGFKISSDDGSATGKAPTQYAIFLDTVLHRMRFPKFLSTVRXXXXXXXXXXXXXXX 413
            HNCVQ F     D   + +  TQY +  D +LHR RFPKF+  V                
Sbjct: 61   HNCVQAFICEGGDVDES-RVKTQYLVLFDNILHRPRFPKFMEIVLQELDKHCEKVLEGLL 119

Query: 414  XHGRLSFDQLKERAKAQSAERKDGPEEA-GLEESFRKLVDAHFVERCPVAEPVIPPRSSV 590
              GRL+  Q+ +RA   +++  D    A  + E+  KL+ A +VERCP AE  I     +
Sbjct: 120  RDGRLTLKQMIDRASQGASQENDSAVVADAVRENLCKLLMARYVERCPAAEVTIVEEEII 179

Query: 591  DPKKKVPRGATRRIKLDVNF---ETEEQRIAAAASLPDVERFNFYLPKRNDHHTGAFGKK 761
              K    RGA    K D NF   ET  QR+  AA   D  RF+          T   G  
Sbjct: 180  TKK----RGA----KSDQNFKAPETTIQRVIEAAVPGDAIRFSL---------TADTGCN 222

Query: 762  RKYVTLEEDSRTGMPSDDIE-ALWRVNYGEFVNRFRQKACVAQARSRLDVSAGTVLDRMF 938
                T   D      ++  +  LWRVN+ EF+   R K  +   R+R+D  A TV+  M 
Sbjct: 223  SDEETKPADINVAENNEKEQLILWRVNFEEFLRYLRDKLLIENVRARMDDGAATVVRAML 282

Query: 939  CATRSIATTGKQDTSAPLSQEEITNAVRSSKEGLGMTVDRIRTSLLQM-CSPQVGFLSRT 1115
             ATR++    K + S PL  +++   V  ++ GL MT+DR++  L+Q+ CS Q+ F    
Sbjct: 283  EATRNVDKRVKIENSVPLELDQLFTEVIKTENGLQMTMDRVKAYLVQLGCSSQISFA--- 339

Query: 1116 GDHSGNYIINIRRIIQVTQTSEVEAIVSNRFGAESRRIFSMLSMNGPM-EQSKIAGKALL 1292
                  Y I+++ II + +  EVE+IV  R+G ++ R+F  LS         KIA   L+
Sbjct: 340  ------YTIDLKHIIHLARNEEVESIVLKRYGRDAYRMFRHLSKEKQFCPTDKIAESTLV 393

Query: 1293 DARQSLGVLYRLLKDGYLQLQEIARTNDHAPAKT-FYLWRVNESALKAQIVDDMYHAALN 1469
            + +++  +L RLLKD YL ++++  +   +  +T   +WRVN+  L   ++D+MYHAALN
Sbjct: 394  EKKEAPKLLNRLLKDNYLHMEKLNVSVVGSNKQTQLLMWRVNQPLLWEYVLDEMYHAALN 453

Query: 1470 LVQRLAXXXXXXXXXXXXXXXXXXXAKSSDGKQPIITLSNRQREQAERIRKIATILETSL 1649
            L  R+A                    +  +  +  IT S   +++ +R++ +  +L +SL
Sbjct: 454  LSLRMA-------------FEQEKDEEILNVPKDKITASEPLQKKYKRLQNVCLLLGSSL 500

Query: 1650 LKLDDSILLFDCF 1688
            LKLDD+++LF  F
Sbjct: 501  LKLDDALMLFHDF 513