BLASTX nr result
ID: Ephedra28_contig00016520
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00016520
(443 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB94059.1| RPB140 [Hordeum vulgare] 103 3e-20
gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra... 103 3e-20
emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [... 102 4e-20
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 102 5e-20
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh... 102 5e-20
gb|AAS86826.1| RNA polymerase II second largest subunit, partial... 102 5e-20
emb|CAB43079.1| RNA polymerase II [Peltanthera floribunda] 102 5e-20
ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Ar... 102 7e-20
ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutr... 102 7e-20
gb|AAY98940.1| RNA polymerase II [Androcymbium dregei] 102 7e-20
ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab... 102 7e-20
emb|CAA79527.1| RNA polymerase II second largest subunit [Arabid... 102 7e-20
emb|CAA79528.1| RNA polymerase II second largest subunit [Arabid... 102 7e-20
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su... 101 9e-20
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su... 101 9e-20
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su... 101 9e-20
ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps... 101 9e-20
gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Trit... 101 9e-20
ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II su... 101 9e-20
gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus pe... 101 9e-20
>gb|AAB94059.1| RPB140 [Hordeum vulgare]
Length = 555
Score = 103 bits (256), Expect = 3e-20
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEG++PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ + LH
Sbjct: 452 WTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDHISKALH 511
>gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
Length = 551
Score = 103 bits (256), Expect = 3e-20
Identities = 50/60 (83%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 430 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 489
>emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp.
Oxelman 2319]
Length = 627
Score = 102 bits (255), Expect = 4e-20
Identities = 49/60 (81%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEG+SPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 447 WTIEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 506
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
tuberosum]
Length = 1191
Score = 102 bits (254), Expect = 5e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WT+EG+SPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 961 WTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1020
>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 102 bits (254), Expect = 5e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WT+EG+SPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 970 WTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1029
>gb|AAS86826.1| RNA polymerase II second largest subunit, partial [Antirrhinum
majus]
Length = 575
Score = 102 bits (254), Expect = 5e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WT+EG+SPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 446 WTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 505
>emb|CAB43079.1| RNA polymerase II [Peltanthera floribunda]
Length = 260
Score = 102 bits (254), Expect = 5e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WT+EG+SPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 85 WTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 144
>ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|NRPB2_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 2; AltName:
Full=DNA-directed RNA polymerase II 135 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit
RPB2; Short=RNA polymerase II subunit 2; Short=RNA
polymerase II subunit B2; AltName: Full=Protein EMBRYO
DEFECTIVE 1989 gi|4455279|emb|CAB36815.1| DNA-directed
RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana] gi|7268968|emb|CAB81278.1|
DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase
II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 102 bits (253), Expect = 7e-20
Identities = 49/60 (81%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEGV+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1021
>ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum]
gi|557114913|gb|ESQ55196.1| hypothetical protein
EUTSA_v10024251mg [Eutrema salsugineum]
Length = 1188
Score = 102 bits (253), Expect = 7e-20
Identities = 49/60 (81%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEGV+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1021
>gb|AAY98940.1| RNA polymerase II [Androcymbium dregei]
Length = 71
Score = 102 bits (253), Expect = 7e-20
Identities = 47/60 (78%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WT+EG++PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 5 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVNNISKALH 64
>ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein
ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata]
Length = 1188
Score = 102 bits (253), Expect = 7e-20
Identities = 49/60 (81%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEGV+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1021
>emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 102 bits (253), Expect = 7e-20
Identities = 49/60 (81%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEGV+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1021
>emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 102 bits (253), Expect = 7e-20
Identities = 49/60 (81%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEGV+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1021
>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
brachyantha]
Length = 1184
Score = 101 bits (252), Expect = 9e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEG++PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 956 WTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1015
>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
X2 [Setaria italica]
Length = 1190
Score = 101 bits (252), Expect = 9e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEG++PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1021
>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
X1 [Setaria italica]
Length = 1226
Score = 101 bits (252), Expect = 9e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEG++PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 998 WTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1057
>ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella]
gi|482554282|gb|EOA18475.1| hypothetical protein
CARUB_v10007021mg [Capsella rubella]
Length = 1188
Score = 101 bits (252), Expect = 9e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WT+EGV+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1021
>gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Triticum urartu]
Length = 1204
Score = 101 bits (252), Expect = 9e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WTIEG++PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 951 WTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1010
>ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Fragaria
vesca subsp. vesca]
Length = 1191
Score = 101 bits (252), Expect = 9e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WT+EGV+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1021
>gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus persica]
Length = 1192
Score = 101 bits (252), Expect = 9e-20
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 208 WTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMSKEEDATPFIDVTIRYNQFCLH 29
WT+EGV+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHM KE DATPF DVT+ LH
Sbjct: 962 WTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 1021