BLASTX nr result
ID: Ephedra28_contig00016392
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00016392
(504 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio ... 96 4e-18
ref|XP_006787960.1| PREDICTED: polyadenylate-binding protein 1-l... 96 5e-18
ref|XP_004549214.1| PREDICTED: polyadenylate-binding protein 1-l... 96 5e-18
ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-l... 96 5e-18
ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-l... 96 5e-18
ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus l... 96 6e-18
pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site O... 96 6e-18
sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding prot... 96 6e-18
emb|CAA40721.1| polyA binding protein [Xenopus laevis] 96 6e-18
ref|XP_001958985.1| GF12652 [Drosophila ananassae] gi|190620283|... 95 8e-18
ref|XP_005569167.1| PREDICTED: polyadenylate-binding protein 1-l... 95 1e-17
ref|XP_005569166.1| PREDICTED: polyadenylate-binding protein 1-l... 95 1e-17
ref|XP_005569165.1| PREDICTED: polyadenylate-binding protein 1-l... 95 1e-17
ref|XP_005569164.1| PREDICTED: polyadenylate-binding protein 1-l... 95 1e-17
ref|XP_005569161.1| PREDICTED: polyadenylate-binding protein 1-l... 95 1e-17
ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-l... 95 1e-17
ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-l... 95 1e-17
ref|XP_006916708.1| PREDICTED: polyadenylate-binding protein 1 i... 94 1e-17
ref|XP_006877209.1| PREDICTED: polyadenylate-binding protein 1-l... 94 1e-17
ref|XP_006877208.1| PREDICTED: polyadenylate-binding protein 1-l... 94 1e-17
>ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein,
cytoplasmic 1 b [Danio rerio] gi|39645430|gb|AAH63948.1|
Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 96.3 bits (238), Expect = 4e-18
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLHQDVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K +PVRIMW
Sbjct: 69 LDTMNFDVIKGRPVRIMW 86
>ref|XP_006787960.1| PREDICTED: polyadenylate-binding protein 1-like [Neolamprologus
brichardi]
Length = 634
Score = 95.9 bits (237), Expect = 5e-18
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLHQDVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K +PVRIMW
Sbjct: 69 LDTMNFDVIKGQPVRIMW 86
>ref|XP_004549214.1| PREDICTED: polyadenylate-binding protein 1-like [Maylandia zebra]
gi|548352598|ref|XP_005728558.1| PREDICTED:
polyadenylate-binding protein 1-like [Pundamilia
nyererei] gi|554813558|ref|XP_005917611.1| PREDICTED:
polyadenylate-binding protein 1-like [Haplochromis
burtoni]
Length = 634
Score = 95.9 bits (237), Expect = 5e-18
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLHQDVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K +PVRIMW
Sbjct: 69 LDTMNFDVIKGQPVRIMW 86
>ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 95.9 bits (237), Expect = 5e-18
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLHQDVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K +PVRIMW
Sbjct: 69 LDTMNFDVIKGQPVRIMW 86
>ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 95.9 bits (237), Expect = 5e-18
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLHQDVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K +PVRIMW
Sbjct: 69 LDTMNFDVIKGQPVRIMW 86
>ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein
[Xenopus laevis]
Length = 633
Score = 95.5 bits (236), Expect = 6e-18
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLHQDVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K +PVRIMW
Sbjct: 69 LDTMNFDVIKGRPVRIMW 86
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of
The Pabp-Binding Site Of Eif4g In Complex With Rrm1-2 Of
Pabp And Poly(A)
Length = 213
Score = 95.5 bits (236), Expect = 6e-18
Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 5/90 (5%)
Frame = -1
Query: 255 PIASLFP-----PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAY 91
P+ S+ P P+++LYVGDLH DVTE L + F I S ++CRD +T +SLGYAY
Sbjct: 2 PLGSMNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAY 61
Query: 90 VNFLSQDEAEKAMNTLNFAMLKTKPVRIMW 1
VNF +AE+A++T+NF ++K KPVRIMW
Sbjct: 62 VNFQQPADAERALDTMNFDVIKGKPVRIMW 91
>sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus
laevis]
Length = 633
Score = 95.5 bits (236), Expect = 6e-18
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLHQDVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K +PVRIMW
Sbjct: 69 LDTMNFDVIKGRPVRIMW 86
>emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 95.5 bits (236), Expect = 6e-18
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLHQDVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K +PVRIMW
Sbjct: 69 LDTMNFDVIKGRPVRIMW 86
>ref|XP_001958985.1| GF12652 [Drosophila ananassae] gi|190620283|gb|EDV35807.1| GF12652
[Drosophila ananassae]
Length = 639
Score = 95.1 bits (235), Expect = 8e-18
Identities = 40/77 (51%), Positives = 58/77 (75%)
Frame = -1
Query: 231 LSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKAM 52
+++LYVGDLHQD+ E NL D F + S ++CRD ++ +SLGYAYVNF +AE+A+
Sbjct: 1 MASLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERAL 60
Query: 51 NTLNFAMLKTKPVRIMW 1
+T+NF +L+ KP+RIMW
Sbjct: 61 DTMNFDLLRNKPIRIMW 77
>ref|XP_005569167.1| PREDICTED: polyadenylate-binding protein 1-like isoform X7 [Macaca
fascicularis]
Length = 504
Score = 94.7 bits (234), Expect = 1e-17
Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Frame = -1
Query: 264 SPAPIASLFP-----PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLG 100
SP P+ ++ PL++LYVGDLH DVTE L + F I S ++CRD T +SLG
Sbjct: 73 SPGPLPTMNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLG 132
Query: 99 YAYVNFLSQDEAEKAMNTLNFAMLKTKPVRIMW 1
YAY+NF +AE+A++T+NF MLK +P+RIMW
Sbjct: 133 YAYINFQQPADAERALDTMNFEMLKGQPIRIMW 165
>ref|XP_005569166.1| PREDICTED: polyadenylate-binding protein 1-like isoform X6 [Macaca
fascicularis]
Length = 529
Score = 94.7 bits (234), Expect = 1e-17
Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Frame = -1
Query: 264 SPAPIASLFP-----PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLG 100
SP P+ ++ PL++LYVGDLH DVTE L + F I S ++CRD T +SLG
Sbjct: 73 SPGPLPTMNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLG 132
Query: 99 YAYVNFLSQDEAEKAMNTLNFAMLKTKPVRIMW 1
YAY+NF +AE+A++T+NF MLK +P+RIMW
Sbjct: 133 YAYINFQQPADAERALDTMNFEMLKGQPIRIMW 165
>ref|XP_005569165.1| PREDICTED: polyadenylate-binding protein 1-like isoform X5 [Macaca
fascicularis]
Length = 581
Score = 94.7 bits (234), Expect = 1e-17
Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Frame = -1
Query: 264 SPAPIASLFP-----PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLG 100
SP P+ ++ PL++LYVGDLH DVTE L + F I S ++CRD T +SLG
Sbjct: 73 SPGPLPTMNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLG 132
Query: 99 YAYVNFLSQDEAEKAMNTLNFAMLKTKPVRIMW 1
YAY+NF +AE+A++T+NF MLK +P+RIMW
Sbjct: 133 YAYINFQQPADAERALDTMNFEMLKGQPIRIMW 165
>ref|XP_005569164.1| PREDICTED: polyadenylate-binding protein 1-like isoform X4 [Macaca
fascicularis]
Length = 590
Score = 94.7 bits (234), Expect = 1e-17
Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Frame = -1
Query: 264 SPAPIASLFP-----PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLG 100
SP P+ ++ PL++LYVGDLH DVTE L + F I S ++CRD T +SLG
Sbjct: 73 SPGPLPTMNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLG 132
Query: 99 YAYVNFLSQDEAEKAMNTLNFAMLKTKPVRIMW 1
YAY+NF +AE+A++T+NF MLK +P+RIMW
Sbjct: 133 YAYINFQQPADAERALDTMNFEMLKGQPIRIMW 165
>ref|XP_005569161.1| PREDICTED: polyadenylate-binding protein 1-like isoform X1 [Macaca
fascicularis] gi|544465925|ref|XP_005569162.1|
PREDICTED: polyadenylate-binding protein 1-like isoform
X2 [Macaca fascicularis]
gi|544465927|ref|XP_005569163.1| PREDICTED:
polyadenylate-binding protein 1-like isoform X3 [Macaca
fascicularis]
Length = 698
Score = 94.7 bits (234), Expect = 1e-17
Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Frame = -1
Query: 264 SPAPIASLFP-----PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLG 100
SP P+ ++ PL++LYVGDLH DVTE L + F I S ++CRD T +SLG
Sbjct: 73 SPGPLPTMNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLG 132
Query: 99 YAYVNFLSQDEAEKAMNTLNFAMLKTKPVRIMW 1
YAY+NF +AE+A++T+NF MLK +P+RIMW
Sbjct: 133 YAYINFQQPADAERALDTMNFEMLKGQPIRIMW 165
>ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 94.7 bits (234), Expect = 1e-17
Identities = 43/78 (55%), Positives = 57/78 (73%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
PL++LYVGDLH DVTE L + F I S ++CRD T +SLGYAY+NF +AE+A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF MLK +P+RIMW
Sbjct: 69 LDTMNFEMLKGQPIRIMW 86
>ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 94.7 bits (234), Expect = 1e-17
Identities = 43/78 (55%), Positives = 57/78 (73%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
PL++LYVGDLH DVTE L + F I S ++CRD T +SLGYAY+NF +AE+A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF MLK +P+RIMW
Sbjct: 69 LDTMNFEMLKGQPIRIMW 86
>ref|XP_006916708.1| PREDICTED: polyadenylate-binding protein 1 isoform X2 [Pteropus
alecto]
Length = 633
Score = 94.4 bits (233), Expect = 1e-17
Identities = 43/78 (55%), Positives = 58/78 (74%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLH DVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K KPVRIMW
Sbjct: 69 LDTMNFDVIKGKPVRIMW 86
>ref|XP_006877209.1| PREDICTED: polyadenylate-binding protein 1-like isoform X3
[Chrysochloris asiatica]
Length = 604
Score = 94.4 bits (233), Expect = 1e-17
Identities = 43/78 (55%), Positives = 58/78 (74%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLH DVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K KPVRIMW
Sbjct: 69 LDTMNFDVIKGKPVRIMW 86
>ref|XP_006877208.1| PREDICTED: polyadenylate-binding protein 1-like isoform X2
[Chrysochloris asiatica]
Length = 633
Score = 94.4 bits (233), Expect = 1e-17
Identities = 43/78 (55%), Positives = 58/78 (74%)
Frame = -1
Query: 234 PLSTLYVGDLHQDVTEDNLRDFFKEFAGISSFKICRDSLTHKSLGYAYVNFLSQDEAEKA 55
P+++LYVGDLH DVTE L + F I S ++CRD +T +SLGYAYVNF +AE+A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 54 MNTLNFAMLKTKPVRIMW 1
++T+NF ++K KPVRIMW
Sbjct: 69 LDTMNFDVIKGKPVRIMW 86