BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00016383
         (556 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 207   2e-51
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   171   1e-40
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   171   1e-40
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   168   9e-40
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   168   9e-40
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   167   2e-39
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   167   2e-39
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   167   2e-39
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   166   5e-39
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   166   5e-39
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...    98   2e-18

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  207 bits (526), Expect = 2e-51
 Identities = 101/144 (70%), Positives = 116/144 (80%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QRLLRPLRAD+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPG
Sbjct: 358 LSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +PFT+P PVNP+DA+T  +FREF      S   T+ + LE S E+  +HTSLKV    
Sbjct: 418 FLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQS 477

Query: 363 LSTEQLRALHELGSTRLGGPLLPK 434
           LS EQL ALHELG++R GGP+LPK
Sbjct: 478 LSPEQLSALHELGNSRCGGPMLPK 501


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 669

 Score =  171 bits (432), Expect = 1e-40
 Identities = 86/144 (59%), Positives = 105/144 (72%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QR+LRPL +   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPG
Sbjct: 358 LSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +PFT+P PVNP+DA+T  +F+ F   A A     +  +LE  AE    H SL++    
Sbjct: 418 FDSPFTRPQPVNPDDAETTHSFQAFCQAAAA-----VETTLEQQAETPDEHQSLRLDCPT 472

Query: 363 LSTEQLRALHELGSTRLGGPLLPK 434
           LS  QL ALH+LG+ R GGPLLP+
Sbjct: 473 LSEHQLWALHKLGNARCGGPLLPQ 496


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  171 bits (432), Expect = 1e-40
 Identities = 90/147 (61%), Positives = 107/147 (72%), Gaps = 3/147 (2%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QR+LRPL++ I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PG
Sbjct: 358 LSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREF---SYTAEASTPTTIADSLEGSAENLASHTSLKVG 353
           F +PF +P PVNP+DA+T ++F+ F   + TAEA        +LE  AE    H SL + 
Sbjct: 418 FDSPFARPQPVNPDDAETTQSFQAFCQATITAEA--------ALEQQAETPDEHQSLSLK 469

Query: 354 HADLSTEQLRALHELGSTRLGGPLLPK 434
              L   QL ALHELG+TR GGPLLPK
Sbjct: 470 CPTLPEHQLWALHELGNTRCGGPLLPK 496


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  168 bits (425), Expect = 9e-40
 Identities = 84/144 (58%), Positives = 103/144 (71%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PG
Sbjct: 358 LSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +PF +P PVNP+DA+T ++F+ F          T+  +L   +E    H SL +  + 
Sbjct: 418 FDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEXTLAQQSETPDEHQSLSLKCST 472

Query: 363 LSTEQLRALHELGSTRLGGPLLPK 434
           L   QL ALHELG+ R GGPLLPK
Sbjct: 473 LPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  168 bits (425), Expect = 9e-40
 Identities = 87/144 (60%), Positives = 105/144 (72%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PG
Sbjct: 358 LSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +PF +P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +  + 
Sbjct: 418 FDSPFARPQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCST 472

Query: 363 LSTEQLRALHELGSTRLGGPLLPK 434
           L   QL ALHELG+ R GGPLLPK
Sbjct: 473 LPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  167 bits (423), Expect = 2e-39
 Identities = 87/144 (60%), Positives = 104/144 (72%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PG
Sbjct: 358 LSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +PF +P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +    
Sbjct: 418 FDSPFARPQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCPT 472

Query: 363 LSTEQLRALHELGSTRLGGPLLPK 434
           L   QL ALHELG+ R GGPLLPK
Sbjct: 473 LPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  167 bits (423), Expect = 2e-39
 Identities = 87/144 (60%), Positives = 104/144 (72%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PG
Sbjct: 358 LSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +PF +P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +    
Sbjct: 418 FDSPFARPQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCPT 472

Query: 363 LSTEQLRALHELGSTRLGGPLLPK 434
           L   QL ALHELG+ R GGPLLPK
Sbjct: 473 LPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  167 bits (423), Expect = 2e-39
 Identities = 87/144 (60%), Positives = 104/144 (72%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PG
Sbjct: 358 LSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +PF +P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +    
Sbjct: 418 FDSPFARPQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCPT 472

Query: 363 LSTEQLRALHELGSTRLGGPLLPK 434
           L   QL ALHELG+ R GGPLLPK
Sbjct: 473 LPEHQLWALHELGNARCGGPLLPK 496


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  166 bits (419), Expect = 5e-39
 Identities = 82/130 (63%), Positives = 96/130 (73%)
 Frame = +3

Query: 51  IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDA 230
           I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNPEDA
Sbjct: 372 ISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDA 431

Query: 231 DTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTR 410
           D    F++FS    ++   T+   LE SAE+   HT LKV  + LS  QL A+H LG +R
Sbjct: 432 DISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHALGHSR 491

Query: 411 LGGPLLPKIT 440
            GGPLLP++T
Sbjct: 492 CGGPLLPELT 501


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  166 bits (419), Expect = 5e-39
 Identities = 86/144 (59%), Positives = 104/144 (72%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PG
Sbjct: 358 LSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPG 417

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +PF +P PVNP+DA+T ++F+ F   A A+   T+A   E   E    H SL +  + 
Sbjct: 418 FDSPFARPQPVNPDDAETTQSFQAFC-QATATVEATLAQQSETPDE----HQSLSLKCST 472

Query: 363 LSTEQLRALHELGSTRLGGPLLPK 434
           L   QL ALHELG+ R G PLLPK
Sbjct: 473 LPEHQLWALHELGNARCGAPLLPK 496


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
           gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
           [Tulip virus X]
          Length = 1361

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 61/143 (42%), Positives = 73/143 (51%)
 Frame = +3

Query: 3   LSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPG 182
           LSG+L+ RLLRP R + Q +++FF+G P   KLIKAL WQP+ LEF V TV    R PPG
Sbjct: 357 LSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPG 416

Query: 183 FHNPFTKPHPVNPEDADTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLKVGHAD 362
           F +P  +P PVN  DA T  A       A  S P                         +
Sbjct: 417 FRHPLCRPLPVNEVDALTTAA------CANQSLPLD-----------------------N 447

Query: 363 LSTEQLRALHELGSTRLGGPLLP 431
           LS +QL ALH LGS R  G  LP
Sbjct: 448 LSEDQLEALHVLGSLRTDGESLP 470