BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00016265
         (1411 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A...   270   1e-69
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   268   3e-69
gb|EMJ07614.1| hypothetical protein PRUPE_ppa016881mg [Prunus pe...   268   4e-69
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao...   266   2e-68
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...   265   3e-68
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   265   3e-68
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]               265   5e-68
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   263   1e-67
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   263   2e-67
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   260   9e-67
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...   260   1e-66
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   259   3e-66
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   259   3e-66
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   258   3e-66
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   256   1e-65
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   256   2e-65
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   255   4e-65
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus...   254   6e-65
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe...   252   3e-64
ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein...   249   2e-63

>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
            gi|548857220|gb|ERN15034.1| hypothetical protein
            AMTR_s00032p00242160 [Amborella trichopoda]
          Length = 624

 Score =  270 bits (690), Expect = 1e-69
 Identities = 181/449 (40%), Positives = 244/449 (54%), Gaps = 18/449 (4%)
 Frame = +1

Query: 118  DLENLLLECAGRSMSLDGHQDNSKTR-KRRPSFSDSENGSDSNKYSEPDDSDQDDEMPNL 294
            DLE+LLLE AGR+ S  G +  S+T+ KRR   S S++GSD    SE DD       P+ 
Sbjct: 5    DLEHLLLEAAGRT-STSGRKKPSQTQPKRRHEGSYSDDGSDPKYESEDDDDSDGPGYPSR 63

Query: 295  KHS--KMPLKKRFET---------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 441
            K S  ++PLKKRFET         G                                   
Sbjct: 64   KPSGSQVPLKKRFETADKDDMRGKGDRDGGSDDSDSGLSVGSDLYKDENDREELSRMTEL 123

Query: 442  EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGADKGKAR 621
            EREM+L +RA++RD+   +K A  +    D  +S             RSS +        
Sbjct: 124  EREMILTDRADRRDNLMRMKKAERQ---GDKSRSTGKELMAPPQARGRSSAKSDRMANKD 180

Query: 622  ALTELIAKKRKAQDTDSQRRR----NDKASKDSSPXXXXXXXXXXXXXXXXXXXHEGSPR 789
            ALTEL+AK ++     S+R+      +KA+  +SP                    E S  
Sbjct: 181  ALTELLAKMQRKSRNRSERQDLMVVRNKAAAAASPVSDSPPSSGVRSSSDG---REVSVE 237

Query: 790  GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIG-EKHG 966
              +  +       S   ++ DI  ITI+RS+LAKWF+EPFFE  I GCFVR+GIG  + G
Sbjct: 238  LGESDEDEGPTSGSEHPTFEDIKGITIRRSRLAKWFLEPFFEEAIVGCFVRVGIGTSRSG 297

Query: 967  RRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDEL 1146
            +  YRLC V+NVDAS  DP ++Y FE R T KYLNC WG E++AARWQM R+SDS+P E 
Sbjct: 298  QSIYRLCMVRNVDAS--DPDRQYKFENRTTHKYLNCVWGSEASAARWQMARISDSAPLEK 355

Query: 1147 EYVDLREEMERKGGKMIRTDEVEEKLTQLEQI-NNYVYSAETVKQMLQEKKMASQRPSNI 1323
            E+++   E+ER GG+M    +V +K   ++++ +++VYSA TVKQMLQEKK AS RPSNI
Sbjct: 356  EFLEWVREVERGGGRMPTKQDVIDKGEAIQRLSSSFVYSAATVKQMLQEKKSASTRPSNI 415

Query: 1324 AAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            AAEK++LRKE+  AES  D  EAER+R +
Sbjct: 416  AAEKDRLRKEMELAESRLDHAEAERVRAR 444


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
            gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
            [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  268 bits (686), Expect = 3e-69
 Identities = 179/459 (38%), Positives = 232/459 (50%), Gaps = 26/459 (5%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            M DLENLLLE AGR+ S    +    +R+R  S+SD    SDS      DDSD+D    +
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGS--SDSR-----DDSDEDRGYAS 53

Query: 292  LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423
             K S  ++PLKKR E                                             
Sbjct: 54   RKPSGSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113

Query: 424  XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 603
                 F+REM+LAERA+K+  K   +    +     +  S          R +RSS R A
Sbjct: 114  AGMTEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSA 173

Query: 604  DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 762
            D+  A+  AL EL AK+ K QD  + R+  D +     S+D S                 
Sbjct: 174  DRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSMKRKPLASSNLSSSSQ 233

Query: 763  XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 933
                  S     G+  G        S   ++ D+ +ITI+RSKLAKW MEPFFE +I GC
Sbjct: 234  SDSDSRSQSDDEGSNAGMLDSDDDRSDVPTFEDVKEITIRRSKLAKWLMEPFFEELIVGC 293

Query: 934  FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1113
            FVR+GIG       YRLC VKNVDA  TDP K Y  E + T KYLN  WG+E++AARWQM
Sbjct: 294  FVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQM 351

Query: 1114 IRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1293
              +SD  P E EY     E+ER  G+M    ++ EK   +++IN++VYSAETVKQMLQEK
Sbjct: 352  AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQMLQEK 411

Query: 1294 KMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            K AS RP N+AAEK++LRKEL  A+S +D+   ERI+ K
Sbjct: 412  KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTK 450


>gb|EMJ07614.1| hypothetical protein PRUPE_ppa016881mg [Prunus persica]
          Length = 601

 Score =  268 bits (685), Expect = 4e-69
 Identities = 176/449 (39%), Positives = 233/449 (51%), Gaps = 18/449 (4%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ S    +     RK+R   S S++GSDS      +DSD D    +
Sbjct: 1    MADLENLLLEAAGRTNSAGKKRQRLPPRKQRGG-SYSDDGSDSRD----EDSDYDRSYAS 55

Query: 292  LKHSKMPLKKRFET----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 441
             K S++PLKKR E           G                                   
Sbjct: 56   RKPSRVPLKKRLEHERSSDEESDYGDGSDHEGANSDDSDVGPDLYKNEADRKWLAELSEL 115

Query: 442  EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGADKGKAR 621
            EREM+L +RAEK+D K  ++    +   + S +S          R +RSS R ADK  A 
Sbjct: 116  EREMILTDRAEKKDGKDFMEKLRSKRGNARSTQSRKETSPLPLSRGVRSSARTADKSAAM 175

Query: 622  --ALTELIAKKRKAQDTDSQRRRND-----KASKDSSPXXXXXXXXXXXXXXXXXXXHEG 780
              AL +L AK+ K QD+ +  +  D     + S+ +SP                   H  
Sbjct: 176  DDALNQLRAKRLKQQDSKAHHKLRDALRASEGSQGTSPIKSKWSLSNSSQIENASGLHSE 235

Query: 781  SPRGNKRGKXXXXXXX-SGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGE 957
                +  G+        S   ++ +I +ITI RSKLAKWFMEPFFE +I GCFVR+GIG 
Sbjct: 236  DEASSADGELLDSDDDVSEPPTFQEIKEITIPRSKLAKWFMEPFFEELIVGCFVRVGIGR 295

Query: 958  KHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSP 1137
                  YRLC V+NVDA +  P ++Y  E + T KYLNC WG ES+AA+WQM  VSDS+P
Sbjct: 296  SSSGPVYRLCMVQNVDAMN--PDRQYKLEGKVTHKYLNCVWGSESSAAKWQMAMVSDSAP 353

Query: 1138 DELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPS 1317
             E E+    +E+ER  G+M    EV EK   L++ N YVYSA TVKQMLQEKK AS RP 
Sbjct: 354  QEEEFKQWFKEVERTAGRMPSKQEVLEKREMLQKSNTYVYSATTVKQMLQEKKYASSRPV 413

Query: 1318 NIAAEKEKLRKELMHAESMDDQEEAERIR 1404
            NIA EK+KLR++L  AE +++ + A  ++
Sbjct: 414  NIAVEKDKLRRQLEIAERVENFKNASGLK 442


>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  266 bits (680), Expect = 2e-68
 Identities = 177/470 (37%), Positives = 236/470 (50%), Gaps = 37/470 (7%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ +   ++ +    +RR   S S+ GSDS      DDSD D    +
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRD----DDSDDDHGYAS 56

Query: 292  LKHS--KMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-------- 441
             K S  ++PLKKR +                                             
Sbjct: 57   RKPSGSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRR 116

Query: 442  --------EREMLLAERAEKRDSKQL---IKSAAERHPPSDSKKSXXXXXXXXXYREMRS 588
                    ERE++L+ERA+KR  K+    I+S  E   PS S+K           R +RS
Sbjct: 117  KLAQMTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSS---RGVRS 173

Query: 589  SVRGADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXX 762
            S R AD+  A+  AL EL AK+ K QD ++ R+  D +   S                  
Sbjct: 174  SARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSL 233

Query: 763  XXXHEGSPRGNKRGKXXXXXXXSGAA--------------SYADICKITIKRSKLAKWFM 900
                +         +        G                ++ DI +ITI+RSKLAKWFM
Sbjct: 234  SSSSQSDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFM 293

Query: 901  EPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFW 1080
            EPFFE +I GC+VR+GIG       YRLC V+NVDA  T+P++ Y  E + T+KYLN  W
Sbjct: 294  EPFFEELIVGCYVRVGIGRSKSGPIYRLCMVRNVDA--TEPERTYKLENKTTYKYLNVVW 351

Query: 1081 GDESNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYS 1260
            G+ES+AARWQM  +SDS P E E+  L  E+ER GG+M    +V EK   L++   +VYS
Sbjct: 352  GNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYS 411

Query: 1261 AETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            A TVKQMLQEKK  S RP NIAAEK++LR++L  A+S  D+ E ERI+M+
Sbjct: 412  AATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMR 461


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
            gi|557088572|gb|ESQ29352.1| hypothetical protein
            EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  265 bits (677), Expect = 3e-68
 Identities = 178/459 (38%), Positives = 229/459 (49%), Gaps = 26/459 (5%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            M DL++LLLE AGR+ +    + +     RR   S S+ GSDS      DDSD++    +
Sbjct: 1    MVDLDDLLLEAAGRTNAPGRSRHSHPPSSRRREGSYSDGGSDSR-----DDSDEERGYAS 55

Query: 292  LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423
             K S  ++PLKKR E                                             
Sbjct: 56   RKPSGSQVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 115

Query: 424  XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 603
                 F+REM+LAERA+K+  K   +    +     +  S          R +RSS R A
Sbjct: 116  AGMTEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSARSA 175

Query: 604  DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 762
            D+  A+  AL EL AK+ K Q+  S R+  D +     S+D S                 
Sbjct: 176  DRAAAKDDALNELRAKRMKQQEPASLRKLRDASKGGSGSRDFSSMKRKPLASSNLSNSSQ 235

Query: 763  XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 933
                  S     G+  G        S   ++ DI  ITI+RSKLAKW MEPFFE +I GC
Sbjct: 236  SDSDSRSQSDDEGSNGGMVDSDDDRSDVPTFEDIKDITIRRSKLAKWLMEPFFEELIVGC 295

Query: 934  FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1113
            FVR+GIG       YRLC VKNVDA  TDP K Y  E + T KYLNC WG ES+AARWQM
Sbjct: 296  FVRVGIGRSKNGPIYRLCMVKNVDA--TDPDKTYKLENKTTHKYLNCIWGHESSAARWQM 353

Query: 1114 IRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1293
              +SD  P E EY     E+ER  G+M    ++ EK   +++IN++VYSAETVKQMLQEK
Sbjct: 354  AMISDGYPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVKQMLQEK 413

Query: 1294 KMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            K AS RP NIAAEK++LRKEL  A+  +D+   ERI+ K
Sbjct: 414  KSASVRPMNIAAEKDRLRKELEVAQIKNDEAGVERIKAK 452


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
            gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
            78902-80833 [Arabidopsis thaliana]
            gi|332195649|gb|AEE33770.1| Paf1C-like transcription
            factor [Arabidopsis thaliana]
          Length = 643

 Score =  265 bits (677), Expect = 3e-68
 Identities = 176/459 (38%), Positives = 231/459 (50%), Gaps = 26/459 (5%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            M DLENLLLE AGR+ S    +    +R+R  S+SD    SDS      DDSD+D    +
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGS--SDSR-----DDSDEDRGYAS 53

Query: 292  LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423
             K S  ++PLKKR E                                             
Sbjct: 54   RKPSGSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113

Query: 424  XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 603
                 F+REM+L+ERA+K+  K   +    +     +  S          R +RSS R A
Sbjct: 114  AGMTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSA 173

Query: 604  DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 762
            D+  A+  AL EL AK+ K QD  + R+  D +     S+D S                 
Sbjct: 174  DRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQ 233

Query: 763  XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 933
                  S     G+  G        S   ++ D+ ++TI+RSKLAKW MEPFFE +I GC
Sbjct: 234  SDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGC 293

Query: 934  FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1113
            FVR+GIG       YRLC VKNVDA  TDP K Y  E + T KYLN  WG+E++AARWQM
Sbjct: 294  FVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQM 351

Query: 1114 IRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1293
              +SD  P E EY     E+ER  G+M    ++ EK   +++ N++VYSAETVKQMLQEK
Sbjct: 352  AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEK 411

Query: 1294 KMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            K AS RP N+AAEK++LRKEL  A+S +D+   ERI+ K
Sbjct: 412  KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSK 450


>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
          Length = 643

 Score =  265 bits (676), Expect = 5e-68
 Identities = 176/459 (38%), Positives = 230/459 (50%), Gaps = 26/459 (5%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            M DLENLLLE AGR+ S         +R+R  S+SD    SDS      DDSD+D    +
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSSHPPSSRRREGSYSDGS--SDSR-----DDSDEDRGYAS 53

Query: 292  LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423
             K S  ++PLKKR E                                             
Sbjct: 54   RKPSGSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113

Query: 424  XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 603
                 F+REM+L+ERA+K+  K   +    +     +  S          R +RSS R A
Sbjct: 114  AGMTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSA 173

Query: 604  DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 762
            D+  A+  AL EL AK+ K QD  + R+  D +     S+D S                 
Sbjct: 174  DRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQ 233

Query: 763  XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 933
                  S     G+  G        S   ++ D+ ++TI+RSKLAKW MEPFFE +I GC
Sbjct: 234  SDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGC 293

Query: 934  FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1113
            FVR+GIG       YRLC VKNVDA  TDP K Y  E + T KYLN  WG+E++AARWQM
Sbjct: 294  FVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQM 351

Query: 1114 IRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1293
              +SD  P E EY     E+ER  G+M    ++ EK   +++ N++VYSAETVKQMLQEK
Sbjct: 352  AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEK 411

Query: 1294 KMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            K AS RP N+AAEK++LRKEL  A+S +D+   ERI+ K
Sbjct: 412  KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSK 450


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  263 bits (672), Expect = 1e-67
 Identities = 173/463 (37%), Positives = 232/463 (50%), Gaps = 30/463 (6%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ +   +++     +RR   S S+ GSDS      DD       P+
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 292  LKHSKMPLKKRFET----------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423
               S++PLKKR +                                               
Sbjct: 61   --GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKL 118

Query: 424  XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 603
                  EREM+L+ERA+K+  K L +    +     + +S          R +R+S R A
Sbjct: 119  AQMSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSA 178

Query: 604  DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDS-----SPXXXXXXXXXXXXXXXX 762
            D+  A+  AL EL A++ K QD ++ R+  D + + S     SP                
Sbjct: 179  DRAAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSS 238

Query: 763  XXXH------EGSPR-GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESI 921
                      EGS   G            S   ++ DI +ITI+RSKLAKWFMEP+FE +
Sbjct: 239  ESESRSHSEDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEEL 298

Query: 922  IEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAA 1101
            I GCFVR+GIG       YRLC V+NVDA+  DP + Y  E + T+KYLN  WG+ES+AA
Sbjct: 299  IVGCFVRVGIGRSKSGPIYRLCLVRNVDAA--DPDRPYKLENKTTYKYLNVIWGNESSAA 356

Query: 1102 RWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQM 1281
            RWQM  +SDS+P E EY     E+ER GG+M    ++ EK   + + N +VYSA TVKQM
Sbjct: 357  RWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQM 416

Query: 1282 LQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            LQEKK AS RP N+AAEK++LR+EL  A+S  D  E ERIR +
Sbjct: 417  LQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRAR 459


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  263 bits (671), Expect = 2e-67
 Identities = 179/467 (38%), Positives = 237/467 (50%), Gaps = 34/467 (7%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNS-KTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMP 288
            MADLENLLLE AGR+    G   +S    +RR   S S+ GSDS      DDSD +   P
Sbjct: 1    MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRD----DDSDDELNYP 56

Query: 289  NLKHS--KMPLKKRFET----------------GXXXXXXXXXXXXXXXXXXXXXXXXXX 414
            + K S  ++PLKKR +                                            
Sbjct: 57   SRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDR 116

Query: 415  XXXXXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSV 594
                     +REM+L++RA K+D K L+   A +     +  +          R MR+S 
Sbjct: 117  RKLSEMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSR-MRASA 175

Query: 595  RGADKG-KARALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXXX 771
            R AD+  K  AL EL AK+ K QD +++RR  + AS++S P                   
Sbjct: 176  RSADRSAKNVALNELRAKRLKQQDPEARRRLRE-ASRNSGPRRFSPPKRKSFTSANLSSS 234

Query: 772  HEGSPRGNKRGKXXXXXXXSGAA--------------SYADICKITIKRSKLAKWFMEPF 909
                                G A              S+ DI +ITI+RSKLAKWFMEPF
Sbjct: 235  SHSDSDSRSHSDDEGSTGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFMEPF 294

Query: 910  FESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDE 1089
            FE +I GCFVR+GIG       YRLC VKNVD+S  DP ++Y  E R T KYLN  WG+E
Sbjct: 295  FEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDSS--DPDRQYKLENRTTHKYLNVVWGNE 352

Query: 1090 SNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAET 1269
            S+AARWQM  VSDS P E E+    +E+ER GG+M    +V EK   +++I  +VYSA+T
Sbjct: 353  SSAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAIQKIITFVYSADT 412

Query: 1270 VKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            VKQMLQEKK +S RP N+AAEK++LR+E+  A+S +D+ E ERI+ +
Sbjct: 413  VKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEVERIKTR 459


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  260 bits (665), Expect = 9e-67
 Identities = 176/455 (38%), Positives = 227/455 (49%), Gaps = 22/455 (4%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ S   ++ ++ + KRR        GS S   S  DDSD +    +
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRR------REGSYSGSDSRDDDSDDNRGYGS 54

Query: 292  LKHS--KMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----FERE 450
             K S  ++PLKKR +                                          ERE
Sbjct: 55   RKPSGSQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDSSNESDDDNHGQMTELERE 114

Query: 451  MLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGADKGKAR--A 624
            M++ ER +K+  K L      R     S +S          R  R + R AD+  A+  A
Sbjct: 115  MMIFERDDKKVDKNLRDKFRSRREER-STRSTKETPPLPSSRSARLAARSADRAAAKDDA 173

Query: 625  LTELIAKKRKAQDTDSQRRRNDKASKDS-------------SPXXXXXXXXXXXXXXXXX 765
            L EL AK+ K QD ++ RR  D +   S             +P                 
Sbjct: 174  LNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESRSHS 233

Query: 766  XXHEGSPRGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRL 945
                 +  G            SG  +Y DI +ITI+RSKLAKWFMEPFFE +I GCFVR+
Sbjct: 234  DDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRV 293

Query: 946  GIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVS 1125
            GIG       YRLC V+NVDA  T+P + Y  E R T KYLN  WG+ES+AARWQM  VS
Sbjct: 294  GIGRSKNGPIYRLCMVRNVDA--TEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVS 351

Query: 1126 DSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMAS 1305
            DS P E E+     E+ER GG+M    +V EK   +++IN +VYSA TVKQMLQEKK AS
Sbjct: 352  DSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKSAS 411

Query: 1306 QRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
             RP N+AAEK++LR+EL  A+S  D  + ERI+ +
Sbjct: 412  SRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKR 446


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
            gi|482569554|gb|EOA33742.1| hypothetical protein
            CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score =  260 bits (664), Expect = 1e-66
 Identities = 176/459 (38%), Positives = 228/459 (49%), Gaps = 26/459 (5%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            M DLENLLLE AGR+      + +     RR   S S+  SDS      DDSD D    +
Sbjct: 1    MGDLENLLLEAAGRTNPAGKSRHSHPPSSRRREGSYSDGSSDSR-----DDSDDDRGFAS 55

Query: 292  LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423
             K S  ++PLKKR E                                             
Sbjct: 56   RKPSGSQVPLKKRLEAEREDRAARNESGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 115

Query: 424  XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 603
                 F+REM+LAERA+K+  K   +    +     +  S          R +RSS R A
Sbjct: 116  AGMTEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSA 175

Query: 604  DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 762
            D+  A+  AL EL AK+ K QD  + R+  D +     S+D S                 
Sbjct: 176  DRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSLKRKPLASSNLSNSSQ 235

Query: 763  XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 933
                  S     G+  G        S   ++ DI +ITI+RSKLAKW MEPFFE +I GC
Sbjct: 236  SDSDSRSQSDDEGSNAG-LDSDDDRSDMPTFEDIKEITIRRSKLAKWLMEPFFEELIVGC 294

Query: 934  FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1113
            FVR+GIG       YRLC V+NVDA  TDP K Y  E + T KYLN  WG+E++AARWQM
Sbjct: 295  FVRVGIGRSKSGPIYRLCMVRNVDA--TDPDKTYKLENKTTHKYLNVIWGNETSAARWQM 352

Query: 1114 IRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1293
              +SD  P E EY     E+ER  G+M    ++ EK   +++IN+++YSAETVKQMLQEK
Sbjct: 353  AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFIYSAETVKQMLQEK 412

Query: 1294 KMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            K AS RP N+AAEK++LRKEL  A+S +D+   ERI+ K
Sbjct: 413  KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTK 451


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  259 bits (661), Expect = 3e-66
 Identities = 175/470 (37%), Positives = 234/470 (49%), Gaps = 37/470 (7%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNS--KTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEM 285
            MADLENLLLE AGR+    G   NS   +R+R+   S S+ GSDS      DD       
Sbjct: 1    MADLENLLLEAAGRT-GKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRK 59

Query: 286  PNLKHSKMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-------- 441
            P+   S++PLKKR ET                                            
Sbjct: 60   PS--GSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQ 117

Query: 442  --------EREMLLAERAEKRDSKQL---IKSAAERHPPSDSKKSXXXXXXXXXYREMRS 588
                    +RE++LA+RA+K+  K L   I+S  +   P+ S+K           R +RS
Sbjct: 118  KLAQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSS---RGVRS 174

Query: 589  SVRGADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXX 762
            S R AD+  A+  AL EL AK+ K QD ++ R+  D +   +                  
Sbjct: 175  SARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARL 234

Query: 763  XXXHEGSPRGNKRGKXXXXXXXSGAAS--------------YADICKITIKRSKLAKWFM 900
                  S  G++           G  +              Y DI +ITI+R+KLAKWFM
Sbjct: 235  SSSSSESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFM 294

Query: 901  EPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFW 1080
            EP+FE +I GCFVR+GIG       YRLC V+NVDA+  +P K Y  E ++T+KYLN  W
Sbjct: 295  EPWFEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAA--EPDKPYKLENKSTYKYLNVTW 352

Query: 1081 GDESNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYS 1260
            G +S+AARWQM  VSDS+P E EY     E ER GG++    ++ EK   + + N +VYS
Sbjct: 353  GADSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYS 412

Query: 1261 AETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            A TVKQMLQEKK AS RP N+AAEK++LR+EL  A+S  D+ E ERI  +
Sbjct: 413  AATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEAR 462


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  259 bits (661), Expect = 3e-66
 Identities = 177/468 (37%), Positives = 234/468 (50%), Gaps = 35/468 (7%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDN---SKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDE 282
            MADLENLLLE AGR+     ++++   S+ RKR  S+SD   GSDS      DDSD D  
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDG--GSDSRD----DDSDDDRG 54

Query: 283  MPNLKHS--KMPLKKRFET----------------GXXXXXXXXXXXXXXXXXXXXXXXX 408
              N K S  ++PLKKR ET                G                        
Sbjct: 55   YANRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDED 114

Query: 409  XXXXXXXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRS 588
                       +RE++LA+RA+K+  K L +    +       +S          R +RS
Sbjct: 115  DRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRS 174

Query: 589  SVRGADKGKAR--ALTELIAKKRKAQDTDSQRRRND--KASKDSSPXXXXXXXXXXXXXX 756
            S R AD+  A+  AL EL AK+ K QD ++ R+  D  + S  S                
Sbjct: 175  SARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASL 234

Query: 757  XXXXXHEGSPR----------GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEP 906
                   GS            G            S   +Y DI +ITI+R+KLAKWFMEP
Sbjct: 235  SSSSSESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEP 294

Query: 907  FFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGD 1086
            +FE +I GCFVR+GIG       YRLC V+NVDA+  +P K Y  E ++T+KYLN  WG 
Sbjct: 295  WFEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAA--EPDKPYKLENKSTYKYLNVTWGA 352

Query: 1087 ESNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAE 1266
            +++AARWQM  VSDS P E EY     E+E  GG++    ++ EK   + + N +VYSA 
Sbjct: 353  DTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAA 412

Query: 1267 TVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            TVKQMLQEKK AS RP N+AAEK++LR+EL  A+S  D+ E ERI  +
Sbjct: 413  TVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINAR 460


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  258 bits (660), Expect = 3e-66
 Identities = 175/455 (38%), Positives = 227/455 (49%), Gaps = 22/455 (4%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ S   ++ ++ + KRR        GS S   S  DDSD +    +
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRR------REGSYSGSDSRDDDSDDNRGYGS 54

Query: 292  LKHS--KMPLKKRFET-----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFERE 450
             K S  ++PLKKR +                                          ERE
Sbjct: 55   RKPSGSQVPLKKRLDPTERDDDQGSQEEGDYDGGASEHEGDSSNESDDDNHGQMTELERE 114

Query: 451  MLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGADKGKAR--A 624
            M++ ER +K+  K L      R     S +S          R  R + R AD+  A+  A
Sbjct: 115  MMIFERDDKKVDKNLRDKFRSRREER-STRSTKETPPLPSSRSARLAARSADRAAAKDDA 173

Query: 625  LTELIAKKRKAQDTDSQRRRNDKASKDS-------------SPXXXXXXXXXXXXXXXXX 765
            L EL AK+ K QD ++ RR  D +   S             +P                 
Sbjct: 174  LNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESRSHS 233

Query: 766  XXHEGSPRGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRL 945
                 +  G            SG  +Y DI +ITI+RSKLAKWFMEPFFE +I GCFVR+
Sbjct: 234  DDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRV 293

Query: 946  GIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVS 1125
            GIG       YRLC V+NVDA  T+P + Y  E R T KYLN  WG+ES+AARWQM  VS
Sbjct: 294  GIGRSKNGPIYRLCMVRNVDA--TEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVS 351

Query: 1126 DSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMAS 1305
            DS P E E+     E+ER  G+M    +V EK   +++IN +VYSA TVKQMLQEKK AS
Sbjct: 352  DSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQMLQEKKSAS 411

Query: 1306 QRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
             RP N+AAEK++LR+EL  A+S  D+ + ERI+ +
Sbjct: 412  SRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKR 446


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  256 bits (655), Expect = 1e-65
 Identities = 175/467 (37%), Positives = 240/467 (51%), Gaps = 34/467 (7%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ +   ++ +    +R+   S S+ GSDS      DDSD D    +
Sbjct: 1    MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRD----DDSDDDRGYAS 56

Query: 292  LKHS--KMPLKKRFET----------------GXXXXXXXXXXXXXXXXXXXXXXXXXXX 417
             K S  ++PLKKR +                                             
Sbjct: 57   RKPSGSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRR 116

Query: 418  XXXXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVR 597
                    +REM+L++RA K++ K L +S   +     S  S          R +RSS R
Sbjct: 117  KLAGMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSR-IRSSAR 175

Query: 598  GADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXX 756
             AD+  A+  AL EL AK+ K QD ++ R+  D +     S+  SP              
Sbjct: 176  SADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSS 235

Query: 757  XXXXXH-------EGSPR--GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPF 909
                         EGS    G            S   ++ DI ++TI+RSKLAKW MEPF
Sbjct: 236  SQSESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPF 295

Query: 910  FESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDE 1089
            FE +I GCFVR+GIG       YRLC V+NVDA  T+P ++Y  E + T KYLN  WG+E
Sbjct: 296  FEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDA--TEPDRQYKLENKITHKYLNVIWGNE 353

Query: 1090 SNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAET 1269
            ++AARWQM  VSDS+P E EY    +E+ER GG+M+   ++ EK   ++++NN+VYSA T
Sbjct: 354  ASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAAT 413

Query: 1270 VKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            VKQMLQ+KK AS RP NIAAEK++LR+E+  A S +D+ E ERI+ +
Sbjct: 414  VKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTR 460


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  256 bits (654), Expect = 2e-65
 Identities = 172/467 (36%), Positives = 233/467 (49%), Gaps = 34/467 (7%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ +   ++ +    +RR   + S+ GSDS       D D DDE+  
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSR------DDDSDDELNY 54

Query: 292  LKH----SKMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF------ 441
                   S++PLKKR +                                    +      
Sbjct: 55   ASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDR 114

Query: 442  ---------EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSV 594
                     +REM+L++RA K+D K L+   A +     +             R MR+S 
Sbjct: 115  RKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR-MRASA 173

Query: 595  RGADKG-KARALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXXX 771
            R AD+  K  AL EL AK+ K QD ++ RR  + AS+++ P                   
Sbjct: 174  RSADRSAKNDALNELRAKRLKQQDPEAHRRLRE-ASRNAGPRHFSPPKRKTFTSTSLSSS 232

Query: 772  HEGSPRGNKRGKXXXXXXXSGAA--------------SYADICKITIKRSKLAKWFMEPF 909
                                G A              S+ DI +ITI+RSKLAKWFMEPF
Sbjct: 233  SHSESESRSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPF 292

Query: 910  FESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDE 1089
            FE +I GCFVR+GIG       YRLC VKNVDAS  +P ++Y  E + T+KYLN  WG+E
Sbjct: 293  FEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--EPDRQYKLENKTTYKYLNVVWGNE 350

Query: 1090 SNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAET 1269
            S+AARWQM  VSDS+P E E+    +E++  GG+M    +V EK   +++   +VYSA T
Sbjct: 351  SSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAAT 410

Query: 1270 VKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            VKQMLQEKK AS RP N+AAEK++LR+EL  A+S  D+ E ERI+ +
Sbjct: 411  VKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTR 457


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  255 bits (651), Expect = 4e-65
 Identities = 174/466 (37%), Positives = 234/466 (50%), Gaps = 33/466 (7%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ +   ++ +  + +RR   + S+ GSDS       D D DDE+  
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSR------DEDSDDELNY 54

Query: 292  LKH----SKMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF------ 441
                   S++PLKKR +                                    +      
Sbjct: 55   ASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDR 114

Query: 442  ---------EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSV 594
                     +REM+L++RA K+D K L+   A +                   R MR+S 
Sbjct: 115  RKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSR-MRASA 173

Query: 595  RGADKG-KARALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXXX 771
            R AD+  K  AL EL AK+ K QD ++ RR  + +    S                    
Sbjct: 174  RSADRSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLSSSS 233

Query: 772  H-----------EGSPR--GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFF 912
            H           EGS    G            S   S+ D+ +ITI+RSKLAKWFMEPFF
Sbjct: 234  HSESESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFF 293

Query: 913  ESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDES 1092
            E +I GCFVR+GIG       YRLC VKNVDAS  +P ++Y  E + T+KYLN  WG+ES
Sbjct: 294  EELIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--EPDRQYKLENKTTYKYLNVVWGNES 351

Query: 1093 NAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETV 1272
            +AARWQM  VSDS+P E E+    +E++R GG+M    +V EK   +++   +VYSA TV
Sbjct: 352  SAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATV 411

Query: 1273 KQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            KQMLQEKK AS RP N+AAEK++LR+EL  A+S  D+ E ERI+ +
Sbjct: 412  KQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTR 457


>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  254 bits (649), Expect = 6e-65
 Identities = 174/468 (37%), Positives = 237/468 (50%), Gaps = 35/468 (7%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ +   ++ +    +RR   + S+ GSDS       D D DDE+  
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSR------DDDSDDELNY 54

Query: 292  LKH----SKMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF------ 441
                   S++PLKKR +                                           
Sbjct: 55   ASRKPSGSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDD 114

Query: 442  ----------EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSS 591
                      +REM+L++RA K+D K L+   A +                   R MR+S
Sbjct: 115  RRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSR-MRAS 173

Query: 592  VRGADKG-KARALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXX 768
             R AD+  K  AL EL AK+ K QD ++ R+  + AS+++ P                  
Sbjct: 174  ARSADRSAKNDALNELRAKRLKQQDPEAHRKLRE-ASRNAGPRHFSPPKRKPFTSTSLSS 232

Query: 769  XH------------EGSPRGNKRGKXXXXXXXSGAA--SYADICKITIKRSKLAKWFMEP 906
                          EGS      G        +G+   S+ DI +ITI+RSKLAKWFMEP
Sbjct: 233  SSHSESESRSHSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEP 292

Query: 907  FFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGD 1086
            FFE +I GCFVR+GIG       YRLC VKNVDAS  +P ++Y  E + T+KYLN  WG+
Sbjct: 293  FFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--EPDRQYKLENKTTYKYLNVVWGN 350

Query: 1087 ESNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAE 1266
            ES+AARWQM  VSDS+P E E+    +E++R GG+M    +V EK   +++   +VYSA 
Sbjct: 351  ESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAA 410

Query: 1267 TVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            TVKQMLQEKK AS RP N+AAEK++LR+EL  A+S  D+ E +RI+ +
Sbjct: 411  TVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKAR 458


>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  252 bits (643), Expect = 3e-64
 Identities = 173/465 (37%), Positives = 235/465 (50%), Gaps = 32/465 (6%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADLENLLLE AGR+ S    + +  + +RR   S S+ GSDS      DDSD      +
Sbjct: 1    MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRG----DDSDDGRGYAS 56

Query: 292  LKHS--KMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-------- 441
             K S  ++PLKKR +                                    +        
Sbjct: 57   RKPSGTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRK 116

Query: 442  -------EREMLLAERAEKRDSKQLIKSAAERH--PPSDSKKSXXXXXXXXXYREMRSSV 594
                   +RE++L++RA+K+D K L +    +   PP  S +             +RSS 
Sbjct: 117  LAEMSELQRELILSDRAQKKDDKSLKEKFRPKKETPPLPSSR-------------VRSSA 163

Query: 595  RGADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXX 768
            R AD+  A+  AL EL AK+ K QD ++ R+  D AS+ SS                   
Sbjct: 164  RSADRAAAKDDALNELRAKRLKQQDPEAHRKLRD-ASRGSSGSRSFSHMTRKSFTAVGRS 222

Query: 769  XHEGSPRGNKRGKXXXXXXX-----------SGAASYADICKITIKRSKLAKWFMEPFFE 915
                S   ++                     S   ++ DI +ITI+RSKLAKW MEPFFE
Sbjct: 223  SSSQSDSDSRSHSEDDGSTGEDPMMDSDDERSEGLTFDDIKEITIRRSKLAKWLMEPFFE 282

Query: 916  SIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESN 1095
             +I GCFVR+GIG       YRLC V+NVDAS  DP +KY  E + T KYLN  WG+E++
Sbjct: 283  ELIVGCFVRVGIGRSKSGPIYRLCMVRNVDAS--DPDRKYKLENKTTHKYLNVVWGNENS 340

Query: 1096 AARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVK 1275
            AARWQM  +SDS+P E E+     E+ER GG++    +V EK   +++IN +VYSA TVK
Sbjct: 341  AARWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVK 400

Query: 1276 QMLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            QM++EKK AS RP NIA EK++LR+EL  A+S  D  E ERI+ +
Sbjct: 401  QMIEEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTR 445


>ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 619

 Score =  249 bits (637), Expect = 2e-63
 Identities = 173/464 (37%), Positives = 239/464 (51%), Gaps = 31/464 (6%)
 Frame = +1

Query: 112  MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 291
            MADL++LLLE AGR+ S    + +  + KRR   S S+ GSDS      DDSD      +
Sbjct: 1    MADLDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRG----DDSDDGRGYAS 56

Query: 292  LKHS--KMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-------- 441
             K S  ++PLKKR +                                    +        
Sbjct: 57   RKPSGSQVPLKKRLDPSEVDDERDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEDDRRK 116

Query: 442  -------EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRG 600
                   +RE++L++RA+K+D K L +    +     + +S          R +RSS R 
Sbjct: 117  LAEMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSR-VRSSARS 175

Query: 601  ADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXX 759
            AD+  A+  AL EL AK+ K QD ++ R+  D +     SK+ S                
Sbjct: 176  ADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNFS-HTIKKSFSAVRRSSS 234

Query: 760  XXXXHEGSPRGNKRGKXXXXXXXSG------AASYADICKITIKRSKLAKWFMEPFFESI 921
                 E     +  G        S         ++ DI +ITI+RS+LAKW MEPFFE +
Sbjct: 235  SQSDSESRSHSDDEGSSADDAIDSDDERGNQGLTFEDIKEITIRRSRLAKWLMEPFFEEL 294

Query: 922  IEGCFVRLGIGE-KHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNA 1098
            I GCFVR+GIG+ K GR  YRLC V+NVD+S  DP ++Y  E + T KYLN  WG+E++A
Sbjct: 295  IVGCFVRVGIGKTKSGRPIYRLCSVRNVDSS--DPDRQYKLENKTTHKYLNVVWGNENSA 352

Query: 1099 ARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQ 1278
            ARWQM  VSDS P E EY     E+E+ GG++   ++V EK   +++ N +VYSAETVKQ
Sbjct: 353  ARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAETVKQ 412

Query: 1279 MLQEKKMASQRPSNIAAEKEKLRKELMHAESMDDQEEAERIRMK 1410
            M+QEKK AS RP NIA EK++LR+EL  A+S  D  E ERI+ +
Sbjct: 413  MIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDDAEVERIKAR 456