BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00015971
         (439 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II su...   236   2e-60
ref|XP_004239877.1| PREDICTED: DNA-directed RNA polymerase II su...   235   5e-60
ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II su...   234   9e-60
gb|EMJ24706.1| hypothetical protein PRUPE_ppa013594mg [Prunus pe...   233   2e-59
ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 ...   233   3e-59
gb|EOY06688.1| RNA polymerases M/15 Kd subunit [Theobroma cacao]      232   3e-59
ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Sela...   232   4e-59
ref|XP_006419407.1| hypothetical protein CICLE_v10006256mg [Citr...   231   6e-59
ref|XP_004295094.1| PREDICTED: DNA-directed RNA polymerase II su...   230   2e-58
ref|XP_002883036.1| hypothetical protein ARALYDRAFT_318462 [Arab...   230   2e-58
gb|ESW10991.1| hypothetical protein PHAVU_009G256100g [Phaseolus...   229   2e-58
ref|XP_002962042.1| hypothetical protein SELMODRAFT_77443 [Selag...   229   2e-58
ref|XP_006664099.1| PREDICTED: DNA-directed RNA polymerases II, ...   229   3e-58
ref|XP_006406782.1| hypothetical protein EUTSA_v10021989mg [Eutr...   229   3e-58
ref|XP_006299525.1| hypothetical protein CARUB_v10015697mg [Caps...   229   3e-58
gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypepti...   229   4e-58
ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycin...   228   5e-58
ref|XP_002312337.1| DNA-directed RNA polymerase II family protei...   228   5e-58
ref|XP_004487774.1| PREDICTED: DNA-directed RNA polymerase II su...   228   6e-58
ref|NP_188323.1| DNA-directed RNA polymerases II, IV and V subun...   228   6e-58

>ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Cucumis sativus] gi|449517969|ref|XP_004166016.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB9-like [Cucumis sativus]
          Length = 114

 Score =  236 bits (603), Expect = 2e-60
 Identities = 104/114 (91%), Positives = 110/114 (96%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVAD+NCVYRNE+HHA  ERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK VRCA CNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_004239877.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Solanum lycopersicum] gi|565378585|ref|XP_006355736.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 9A-like [Solanum tuberosum]
          Length = 114

 Score =  235 bits (599), Expect = 5e-60
 Identities = 104/114 (91%), Positives = 111/114 (97%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQE A++NCVYRNE+HH+AAERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEPAENNCVYRNEIHHSAAERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK+VRC+ C HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKSVRCSQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis
           vinifera] gi|147769002|emb|CAN66735.1| hypothetical
           protein VITISV_024186 [Vitis vinifera]
           gi|296083263|emb|CBI22899.3| unnamed protein product
           [Vitis vinifera]
          Length = 114

 Score =  234 bits (597), Expect = 9e-60
 Identities = 103/114 (90%), Positives = 111/114 (97%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED+EQKILLYACRNCDHQEVA++NCVYRNE+HH+  ERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK+VRCA CNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>gb|EMJ24706.1| hypothetical protein PRUPE_ppa013594mg [Prunus persica]
          Length = 114

 Score =  233 bits (594), Expect = 2e-59
 Identities = 102/114 (89%), Positives = 109/114 (95%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKEDK+QKILLYACRNCDHQEVAD+NCVYRNE+HHA  ERTQ+LQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQILQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK VRC+ C HGEAVFFQATARGEEGMTLFFVCCNP+CGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCSECKHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRD 114


>ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 [Medicago truncatula]
           gi|87240462|gb|ABD32320.1| DNA-directed RNA polymerase,
           subunit C11/M/9 [Medicago truncatula]
           gi|217075262|gb|ACJ85991.1| unknown [Medicago
           truncatula] gi|355483825|gb|AES65028.1| DNA-directed RNA
           polymerase II subunit RPB9 [Medicago truncatula]
           gi|388497558|gb|AFK36845.1| unknown [Medicago
           truncatula]
          Length = 114

 Score =  233 bits (593), Expect = 3e-59
 Identities = 103/114 (90%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED+EQKILLYACRNCDHQE AD+ CVYRNE+HH+ AERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK VRC  CNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>gb|EOY06688.1| RNA polymerases M/15 Kd subunit [Theobroma cacao]
          Length = 114

 Score =  232 bits (592), Expect = 3e-59
 Identities = 103/114 (90%), Positives = 110/114 (96%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED+EQKILLYACRNCDHQEVA++NCVYRNEVHH+A ERTQ+LQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEVHHSAGERTQILQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK+V CA C HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKSVICANCKHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
           gi|302811122|ref|XP_002987251.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300145148|gb|EFJ11827.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300156045|gb|EFJ22675.1| hypothetical protein
           SELMODRAFT_232741 [Selaginella moellendorffii]
          Length = 115

 Score =  232 bits (591), Expect = 4e-59
 Identities = 103/114 (90%), Positives = 109/114 (95%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED++QKILLYACRNCDHQEVAD+NCVYRNEVHH+A ERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEVHHSAGERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVASDPTLPRTK+VRC  C HGEAVFFQAT RGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVASDPTLPRTKSVRCVRCKHGEAVFFQATTRGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_006419407.1| hypothetical protein CICLE_v10006256mg [Citrus clementina]
           gi|568871362|ref|XP_006488857.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 9A-like [Citrus
           sinensis] gi|557521280|gb|ESR32647.1| hypothetical
           protein CICLE_v10006256mg [Citrus clementina]
          Length = 114

 Score =  231 bits (590), Expect = 6e-59
 Identities = 102/114 (89%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKEDK+QKILLYACRNCDHQEVAD+NCVYRNEVHH+  ERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK VRC  C HGEAVFFQAT+RGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEEGMTLFFVCCNPNCGHRWRE 114


>ref|XP_004295094.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Fragaria vesca subsp. vesca]
          Length = 114

 Score =  230 bits (586), Expect = 2e-58
 Identities = 101/114 (88%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKE+KE KILLYACRNCDHQEVAD+NCVYRNE+HH+  ERTQ+LQ
Sbjct: 1   MSTMKFCRECNNILYPKENKEDKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQILQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK VRCA C HGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCKHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_002883036.1| hypothetical protein ARALYDRAFT_318462 [Arabidopsis lyrata subsp.
           lyrata] gi|297328876|gb|EFH59295.1| hypothetical protein
           ARALYDRAFT_318462 [Arabidopsis lyrata subsp. lyrata]
          Length = 114

 Score =  230 bits (586), Expect = 2e-58
 Identities = 102/114 (89%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVAD++CVYRNEVHH+ +ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVASDPTLPRTK VRCA C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHSEAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114


>gb|ESW10991.1| hypothetical protein PHAVU_009G256100g [Phaseolus vulgaris]
          Length = 114

 Score =  229 bits (585), Expect = 2e-58
 Identities = 101/114 (88%), Positives = 109/114 (95%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED++QKILLYACRNCDHQEVAD+ CVYRNE+HH+  ERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK+VRC  CNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCTQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_002962042.1| hypothetical protein SELMODRAFT_77443 [Selaginella moellendorffii]
           gi|302775260|ref|XP_002971047.1| hypothetical protein
           SELMODRAFT_95006 [Selaginella moellendorffii]
           gi|300161029|gb|EFJ27645.1| hypothetical protein
           SELMODRAFT_95006 [Selaginella moellendorffii]
           gi|300170701|gb|EFJ37302.1| hypothetical protein
           SELMODRAFT_77443 [Selaginella moellendorffii]
          Length = 114

 Score =  229 bits (585), Expect = 2e-58
 Identities = 102/114 (89%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED++QK+LLYACRNCDHQE AD+NCVYRNEVHH A ERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKLLLYACRNCDHQEAADNNCVYRNEVHHTADERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVASDPTLPRTK VRC+ C HGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVASDPTLPRTKDVRCSRCKHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_006664099.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           9B-like [Oryza brachyantha]
          Length = 114

 Score =  229 bits (584), Expect = 3e-58
 Identities = 102/114 (89%), Positives = 109/114 (95%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED++QKILLYACRNCDHQEVAD+NCVYRN VHH+A E TQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA DPTLPRTK+VRCAVC HGEAVFFQATARGEEGMTLFFVCCNP+CGHRWR+
Sbjct: 61  DVAGDPTLPRTKSVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 114


>ref|XP_006406782.1| hypothetical protein EUTSA_v10021989mg [Eutrema salsugineum]
           gi|557107928|gb|ESQ48235.1| hypothetical protein
           EUTSA_v10021989mg [Eutrema salsugineum]
          Length = 114

 Score =  229 bits (584), Expect = 3e-58
 Identities = 101/114 (88%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKEDKEQKILLYACRNC+HQE AD++CVYRNEVHH+ +ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCEHQEAADNSCVYRNEVHHSVSERTQILT 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVASDPTLPRTK VRCA C HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114


>ref|XP_006299525.1| hypothetical protein CARUB_v10015697mg [Capsella rubella]
           gi|482568234|gb|EOA32423.1| hypothetical protein
           CARUB_v10015697mg [Capsella rubella]
          Length = 114

 Score =  229 bits (584), Expect = 3e-58
 Identities = 102/114 (89%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVAD++CVYRNEVHH+ +ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVASDPTLPRTK VRCA C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114


>gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative,
           expressed [Oryza sativa Japonica Group]
           gi|125537020|gb|EAY83508.1| hypothetical protein
           OsI_38722 [Oryza sativa Indica Group]
           gi|125579719|gb|EAZ20865.1| hypothetical protein
           OsJ_36504 [Oryza sativa Japonica Group]
          Length = 114

 Score =  229 bits (583), Expect = 4e-58
 Identities = 102/114 (89%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED++QKILLYACRNCDHQEVAD+NCVYRN VHH+A E TQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA DPTLPRTK VRCAVC HGEAVFFQATARGEEGMTLFFVCCNP+CGHRWR+
Sbjct: 61  DVAGDPTLPRTKAVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 114


>ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycine max]
           gi|255627167|gb|ACU13928.1| unknown [Glycine max]
          Length = 114

 Score =  228 bits (582), Expect = 5e-58
 Identities = 99/114 (86%), Positives = 109/114 (95%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MS MKFCRECNNILYPKED++QK+LL+ACRNCDHQEVAD+ CVYRNE+HH+  ERTQVLQ
Sbjct: 1   MSAMKFCRECNNILYPKEDRDQKVLLFACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK+VRC+ CNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKSVRCSQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_002312337.1| DNA-directed RNA polymerase II family protein [Populus trichocarpa]
           gi|222852157|gb|EEE89704.1| DNA-directed RNA polymerase
           II family protein [Populus trichocarpa]
          Length = 114

 Score =  228 bits (582), Expect = 5e-58
 Identities = 100/114 (87%), Positives = 107/114 (93%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYP+ED++QKILLYACRNCDHQE+AD NCVYRNEVHH+ AERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPREDRDQKILLYACRNCDHQEIADDNCVYRNEVHHSVAERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK V C VC H EAVFFQAT+RGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVTCTVCKHPEAVFFQATSRGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_004487774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Cicer
           arietinum]
          Length = 114

 Score =  228 bits (581), Expect = 6e-58
 Identities = 100/114 (87%), Positives = 107/114 (93%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKED++Q+ LLYACRNCDHQEVAD+ CVYRNE+HH+  ERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQRNLLYACRNCDHQEVADNYCVYRNEIHHSVGERTQVLQ 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVA+DPTLPRTK VRC  CNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|NP_188323.1| DNA-directed RNA polymerases II, IV and V subunit 9A [Arabidopsis
           thaliana] gi|75126970|sp|Q6NLH0.1|RPB9A_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           9A gi|45752612|gb|AAS76204.1| At3g16980 [Arabidopsis
           thaliana] gi|46359779|gb|AAS88753.1| At3g16980
           [Arabidopsis thaliana] gi|332642370|gb|AEE75891.1|
           DNA-directed RNA polymerase NRPB9A/NRPD9A/NRPE9A
           [Arabidopsis thaliana]
          Length = 114

 Score =  228 bits (581), Expect = 6e-58
 Identities = 101/114 (88%), Positives = 108/114 (94%)
 Frame = +2

Query: 77  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADSNCVYRNEVHHAAAERTQVLQ 256
           MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVAD++CVYRNEVHH+ +ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 257 DVASDPTLPRTKTVRCAVCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 418
           DVASDPTLPRTK VRC+ C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114