BLASTX nr result
ID: Ephedra28_contig00015562
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00015562
(1783 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 375 e-101
gb|AGW47867.1| polyprotein [Phaseolus vulgaris] 374 e-101
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 370 1e-99
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 369 2e-99
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 369 2e-99
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 364 6e-98
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera] 362 4e-97
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana] 361 6e-97
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 357 9e-96
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768... 354 8e-95
gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana] 354 8e-95
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 353 1e-94
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 353 2e-94
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 345 3e-92
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus] 342 3e-91
emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera] 339 2e-90
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 339 3e-90
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 338 3e-90
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157... 337 8e-90
gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsi... 337 1e-89
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 375 bits (964), Expect = e-101
Identities = 218/616 (35%), Positives = 337/616 (54%), Gaps = 35/616 (5%)
Frame = -1
Query: 1753 ISIPKQNY*SCVIGKHHKLSFPTQGF-RATKFLELIHSDICDPMSYKTHSGYIYFITFID 1577
I+ P Q C++GK K+SFP + RA K LELIH+D+C P+ K+ YF+ FID
Sbjct: 495 INHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFID 554
Query: 1576 DYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKG 1397
D+SR W+Y LK K +VF+ F KF V+ + I +RSD G ++ S F +C++ G
Sbjct: 555 DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614
Query: 1396 IKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKA 1232
I+RQ+TVP +PQ NG+++R NRT++E R +L W EA+ A Y++N K+
Sbjct: 615 IRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674
Query: 1231 LYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRL 1052
+ K+P E W G KP +SH FG + +P EK+ KLDDK++K IFIGY +KGY+L
Sbjct: 675 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKL 734
Query: 1051 LDMETKNIIISREIK-----EADTESFKNDKNIPK--ETTKNSSENKNPLDKIETTIPNG 893
+ +TK IISR I E D S + D N E K + P + TT P
Sbjct: 735 YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTS 794
Query: 892 FKK*PLWYRLMLQEAENFIKGKTIGANLCFPIDLEIPKSPTEAIKKQHWKNVMDEEMAKM 713
+ I+ K C P+D + EAI+K+ W+N MDEE+ +
Sbjct: 795 -------------PTSSQIEEK------CEPMDFQ------EAIEKKTWRNAMDEEIKSI 829
Query: 712 KNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGIDYKDTFAP 533
+ + W L LP G K +G +W+Y K G +++YKARLV +G++Q+ GIDY + FAP
Sbjct: 830 QKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAP 889
Query: 532 IAKMRTI*SIISLATKKGWELHHLDVKSAFQN---------------------NLSCRIL 416
+A++ T+ IISLA + W++H +DVKSAF N + R+
Sbjct: 890 VARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLK 949
Query: 415 KSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVLLA-FHVNXXXXXXX 239
K+LYGLKQAPRAW +++++ + F K + + YI ++L+A +V+
Sbjct: 950 KALYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKEDILIACLYVDDLIFTGN 1008
Query: 238 XXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIEEYNLTNNN 59
++ +EFE+ D G + YLG+++ + +NG + QE YA ++++++ + ++N
Sbjct: 1009 NPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSN 1068
Query: 58 GRKYPLDSGAKLGEDE 11
P++ G KL + E
Sbjct: 1069 PVCTPMECGIKLSKKE 1084
>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
Length = 1471
Score = 374 bits (961), Expect = e-101
Identities = 207/598 (34%), Positives = 327/598 (54%), Gaps = 29/598 (4%)
Frame = -1
Query: 1723 CVIGKHHKLSFPTQG-FRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYL 1547
CV+ KH + SFP + + A + LELIH+DIC P++ ++ SG YFITFIDD+SR W+Y
Sbjct: 526 CVLSKHVRTSFPKKAQYWAKQPLELIHTDICGPITPESFSGKRYFITFIDDFSRKTWVYF 585
Query: 1546 LKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYN 1367
LK K + F+ F KF +V+ +I +RSD G +Y S F ++C+ +GI+R +T PY
Sbjct: 586 LKEKSEAFEVFKKFKVMVERTTDKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTAPYT 645
Query: 1366 PQ*NGISKR*NRTLVEAVRFLLHD-----AWWGEALLTANYIINHWLNKALYMKSPMEVW 1202
PQ NG+++R NRT+++ VR +L +W EA+ A Y+ N + L ++P E W
Sbjct: 646 PQQNGVAERKNRTILDMVRSMLKSKKMPKEFWAEAVQCAIYVQNRCPHVKLDDQTPQEAW 705
Query: 1201 YGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIII 1022
G KP +SH FG Y +P +++ KL+DK+K+ +FIGY TKGY+LLD +K + +
Sbjct: 706 SGQKPTVSHLKVFGSVAYAHVPDQRRTKLEDKSKRYVFIGYDEKTKGYKLLDPISKKVTV 765
Query: 1021 SR--EIKEADTESFKNDKNIPKETTKNSSENKNPLDKIETTIPNGFKK*PLWYRLMLQEA 848
SR +I EA + N + E ++S + N ETT + P ++
Sbjct: 766 SRDVQINEASEWDWNNSSEVMIEVGESSPTSINS----ETTDDEDEPRQP-----KIRSL 816
Query: 847 ENFIKGKTIGANLCFPIDLEIPKSPTEAIKKQHWKNVMDEEMAKMKNKNVWRLEELPEGR 668
+ +C D E S EA++ + W+ MDEE+ + N W L ELPEG
Sbjct: 817 HDLYDSTNEVHLVCLLADAE-NISFEEAVRDKKWQTAMDEEIKAIDRNNTWELTELPEGS 875
Query: 667 KEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGIDYKDTFAPIAKMRTI*SIISLAT 488
+ +G +W++ K+ G +++YKARLV +G+ QKEGIDY + FAP+ +M TI +IS A
Sbjct: 876 QPIGVKWIFKKKMNAQGEIERYKARLVAKGYKQKEGIDYDEVFAPVVRMETIRLLISQAA 935
Query: 487 KKGWELHHLDVKSAFQNNL---------------------SCRILKSLYGLKQAPRAWYK 371
+ W + +DVKSAF N + ++ K+LYGLKQAPRAW
Sbjct: 936 QFKWPIFQMDVKSAFLNGVLEEEVYIEQPPGYMKIGEEKKVLKLKKALYGLKQAPRAWNT 995
Query: 370 KLEEFLSTQGFTKSISDPNLFYIGESTREVLLAFHVNXXXXXXXXXXXXXXXXXKLREEF 191
+++ + GF + + L+ + +A +V+ +R EF
Sbjct: 996 RIDTYFKENGFKQCPYEHALYAKNNGGNMIFVALYVDDLIFMGNNNDMIEEFKGTMRREF 1055
Query: 190 EIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIEEYNLTNNNGRKYPLDSGAKLGE 17
E+ D G ++ +LGL++ + G ++QE YA +++++Y + N N P++ GAKL +
Sbjct: 1056 EMTDLGLMKFFLGLEVRQKETGIFVSQEKYAKEILKKYKMENCNPVSIPMEPGAKLSK 1113
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 370 bits (950), Expect = 1e-99
Identities = 219/633 (34%), Positives = 343/633 (54%), Gaps = 52/633 (8%)
Frame = -1
Query: 1753 ISIPKQNY*SCVIGKHHKLSFPTQGF-RATKFLELIHSDICDPMSYKTHSGYIYFITFID 1577
I+ P Q C++GK K+SFP + RA K LELIH+D+C P+ K+ YF+ FID
Sbjct: 495 INHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFID 554
Query: 1576 DYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKG 1397
D+SR W+Y LK K +VF+ F KF V+ + I +RSD G ++ S F +C++ G
Sbjct: 555 DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614
Query: 1396 IKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKA 1232
I+RQ+TVP +PQ NG+++R NRT++E R +L W EA+ A Y++N K+
Sbjct: 615 IRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674
Query: 1231 LYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRL 1052
+ K+P E W G K +SH FG + +P EK+ KLDDK++K IFIGY +KGY+L
Sbjct: 675 VSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKL 734
Query: 1051 LDMETKNIIISREIK-----EADTESFKNDKNIPKETTKNSSE--NKNPLDKIETTIPNG 893
+ +TK IISR I E D S + D N ++ E + P + TT P
Sbjct: 735 YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTS 794
Query: 892 FKK*PLWYRLMLQEAENFIKGKTIGA---------NL--------CFPIDLEIPKSPTEA 764
P ++ +E + ++I NL C P+D + EA
Sbjct: 795 ----PTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQ------EA 844
Query: 763 IKKQHWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVV 584
I+K+ W+N MDEE+ ++ + W L LP G K +G +W+Y K G +++YKARLV
Sbjct: 845 IEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVA 904
Query: 583 QGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAFQN----------- 437
+G+ Q+ GIDY + FAP+A++ T+ IISLA + W++H +DVKSAF N
Sbjct: 905 KGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQ 964
Query: 436 ----------NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTR 287
+ R+ K+LYGLKQAPRAW +++++ + F K + + YI
Sbjct: 965 PQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKE 1023
Query: 286 EVLLA-FHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQ 110
++L+A +V+ ++ +EFE+ D G + YLG+++ + +NG + Q
Sbjct: 1024 DILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQ 1083
Query: 109 EAYASKLIEEYNLTNNNGRKYPLDSGAKLGEDE 11
E YA ++++++ + ++N P++ G KL + E
Sbjct: 1084 EGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKE 1116
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 369 bits (947), Expect = 2e-99
Identities = 219/633 (34%), Positives = 343/633 (54%), Gaps = 52/633 (8%)
Frame = -1
Query: 1753 ISIPKQNY*SCVIGKHHKLSFPTQGF-RATKFLELIHSDICDPMSYKTHSGYIYFITFID 1577
I+ P Q C++GK K+SFP + RA K LELIH+D+C P+ K+ YF+ FID
Sbjct: 495 INHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFID 554
Query: 1576 DYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKG 1397
D+SR W+Y LK K +VF+ F KF V+ + I +RSD G ++ S F +C++ G
Sbjct: 555 DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614
Query: 1396 IKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKA 1232
I+RQ+TVP +PQ NG+ +R NRT++E R +L W EA+ A Y++N K+
Sbjct: 615 IRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674
Query: 1231 LYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRL 1052
+ K+P E W G KP +SH FG + +P EK+ KLDDK++K IFIGY +KGY+L
Sbjct: 675 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKL 734
Query: 1051 LDMETKNIIISREIK-----EADTESFKNDKNIPKETTKNSSE--NKNPLDKIETTIPNG 893
+ +TK IISR I E D S + D N ++ E + P + TT P
Sbjct: 735 YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTS 794
Query: 892 FKK*PLWYRLMLQEAENFIKGKTIGA---------NL--------CFPIDLEIPKSPTEA 764
P ++ +E + ++I NL C P+D + +A
Sbjct: 795 ----PTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQ------KA 844
Query: 763 IKKQHWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVV 584
I+K+ W+N MDEE+ ++ + W L LP G K +G +W+Y K G +++YKARLV
Sbjct: 845 IEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVA 904
Query: 583 QGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAFQN----------- 437
+G++Q+ GIDY + FAP+A++ T+ IISLA + W++H +DVKSAF N
Sbjct: 905 KGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQ 964
Query: 436 ----------NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTR 287
+ R+ K LYGLKQAPRAW +++++ + F K + + YI
Sbjct: 965 PQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKE 1023
Query: 286 EVLLA-FHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQ 110
++L+A +V+ ++ +EFE+ D G + YLG+++ + +NG + Q
Sbjct: 1024 DILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQ 1083
Query: 109 EAYASKLIEEYNLTNNNGRKYPLDSGAKLGEDE 11
E YA ++++++ + ++N P++ G KL + E
Sbjct: 1084 EGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKE 1116
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 369 bits (947), Expect = 2e-99
Identities = 219/633 (34%), Positives = 343/633 (54%), Gaps = 52/633 (8%)
Frame = -1
Query: 1753 ISIPKQNY*SCVIGKHHKLSFPTQGF-RATKFLELIHSDICDPMSYKTHSGYIYFITFID 1577
I+ P Q C++GK K+SFP + RA K LELIH+D+C P+ K+ YF+ FID
Sbjct: 495 INHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFID 554
Query: 1576 DYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKG 1397
D+SR W+Y LK K +VF+ F KF V+ + I +RSD G ++ S F +C++ G
Sbjct: 555 DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614
Query: 1396 IKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKA 1232
I+RQ+TVP +PQ NG+ +R NRT++E R +L W EA+ A Y++N K+
Sbjct: 615 IRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674
Query: 1231 LYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRL 1052
+ K+P E W G KP +SH FG + +P EK+ KLDDK++K IFIGY +KGY+L
Sbjct: 675 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKL 734
Query: 1051 LDMETKNIIISREIK-----EADTESFKNDKNIPKETTKNSSE--NKNPLDKIETTIPNG 893
+ +TK IISR I E D S + D N ++ E + P + TT P
Sbjct: 735 YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTS 794
Query: 892 FKK*PLWYRLMLQEAENFIKGKTIGA---------NL--------CFPIDLEIPKSPTEA 764
P ++ +E + ++I NL C P+D + +A
Sbjct: 795 ----PTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQ------KA 844
Query: 763 IKKQHWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVV 584
I+K+ W+N MDEE+ ++ + W L LP G K +G +W+Y K G +++YKARLV
Sbjct: 845 IEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVA 904
Query: 583 QGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAFQN----------- 437
+G++Q+ GIDY + FAP+A++ T+ IISLA + W++H +DVKSAF N
Sbjct: 905 KGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQ 964
Query: 436 ----------NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTR 287
+ R+ K LYGLKQAPRAW +++++ + F K + + YI
Sbjct: 965 PQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKE 1023
Query: 286 EVLLA-FHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQ 110
++L+A +V+ ++ +EFE+ D G + YLG+++ + +NG + Q
Sbjct: 1024 DILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQ 1083
Query: 109 EAYASKLIEEYNLTNNNGRKYPLDSGAKLGEDE 11
E YA ++++++ + ++N P++ G KL + E
Sbjct: 1084 EGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKE 1116
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1272
Score = 364 bits (935), Expect = 6e-98
Identities = 212/609 (34%), Positives = 330/609 (54%), Gaps = 44/609 (7%)
Frame = -1
Query: 1753 ISIPKQNY*SCVIGKHHKLSFPTQGF-RATKFLELIHSDICDPMSYKTHSGYIYFITFID 1577
I+ P Q C++G K+SFP + RA K LELIH+D+C P+ K+ YF+ FID
Sbjct: 495 INHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFID 554
Query: 1576 DYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKG 1397
D+SR W+Y LK K +VF+ F KF V+ + I +RSD G ++ S F +C++ G
Sbjct: 555 DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNG 614
Query: 1396 IKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKA 1232
I+RQ+TVP +PQ NG+++R NRT++E R +L W EA+ A Y++N K+
Sbjct: 615 IRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674
Query: 1231 LYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRL 1052
+ K+P E W G KP +SH FG + +P EK+ KLDDK++K IFIGY +KGY+L
Sbjct: 675 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKL 734
Query: 1051 LDMETKNIIISREIK-----EADTES----------FKNDKNIP-KETTKNSSENKNPLD 920
+ +TK IISR I E D S F+ DK P +E + P
Sbjct: 735 YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTS 794
Query: 919 KIETTIPNGFKK*PLWYRLMLQEAENFIKGKTIGANLCFPIDLEIPKSPTEAIKKQHWKN 740
+ I + +R +QE + + C + E P EAI+K+ W+N
Sbjct: 795 PTSSQIEESSSERTPRFR-SIQELYEVTENQENLTLFCLFAECE-PMDFQEAIEKKTWRN 852
Query: 739 VMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEG 560
MDEE+ ++ + W L LP G K +G +W+Y K G +++YKARLV +G++Q+ G
Sbjct: 853 AMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAG 912
Query: 559 IDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAFQN------------------- 437
IDY + FAP+A++ T+ IISLA + W++H +DVKSAF N
Sbjct: 913 IDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 972
Query: 436 --NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVLLA-FH 266
+ R+ K LYGLKQAPRAW +++++ + F K + + YI ++L+A +
Sbjct: 973 EEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYE-HALYIKIQKEDILIACLY 1031
Query: 265 VNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLI 86
V+ ++ +EFE+ D G + YLG+++ + +NG + QE YA +++
Sbjct: 1032 VDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVL 1091
Query: 85 EEYNLTNNN 59
+++ + ++N
Sbjct: 1092 KKFKMDDSN 1100
>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
Length = 2041
Score = 362 bits (928), Expect = 4e-97
Identities = 211/624 (33%), Positives = 331/624 (53%), Gaps = 42/624 (6%)
Frame = -1
Query: 1756 KISIPKQNY*SCVIGKHHKLSFP-TQGFRATKFLELIHSDICDPMSYKTHSGYIYFITFI 1580
+IS+ Q SC +GK + FP RAT LELIHSDIC PMS + S +YF FI
Sbjct: 1205 EISVNAQTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFI 1264
Query: 1579 DDYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNK 1400
DD+SR W+Y LK K V F F K+V+T+ + LR+D G +Y S F FC+
Sbjct: 1265 DDFSRMTWVYFLKTKSQVLSMFKSFKKMVETQSGQXVKVLRTDNGGEYTSKEFSVFCQEA 1324
Query: 1399 GIKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLHD-----AWWGEALLTANYIINHWLNK 1235
GI Q+T PY+PQ NG+S+R NRT++E R +L + W EA+ T+ Y++N K
Sbjct: 1325 GIVHQLTAPYSPQXNGVSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTK 1384
Query: 1234 ALYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYR 1055
++ K+P+E W G KP++ H FG Y +P K+ KLD++A+KG+F+GY +KGYR
Sbjct: 1385 SVQSKTPIEAWSGVKPSVKHLKVFGSFCYLHVPSVKRGKLDERAEKGVFVGYAAESKGYR 1444
Query: 1054 LLDMETKNIIISREIKEADTESF---------KNDKNIPK--ETTKNSSENKNPLDKIET 908
+ + I+ISR++ D S+ K D+ P E S+ + PLD T
Sbjct: 1445 IYSLSRMKIVISRDV-HFDENSYWXWDLKKVHKCDQTTPSILEPAIESTIIEGPLDVEAT 1503
Query: 907 TIPNGFKK*PL---WYRLMLQEAENFIKGKTIGANLCFPIDLEIPKSPTEAIKKQHWKNV 737
+ K PL + R L AE P TEA + W
Sbjct: 1504 SDTPVLKMRPLFDVYERCNLVHAE--------------------PTCYTEAARFLEWIEA 1543
Query: 736 MDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGI 557
M E+ ++ W+L ELPE + +G +W++ K DGS+ ++KARLVV+GF Q G+
Sbjct: 1544 MKAEIDAIERNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGV 1603
Query: 556 DYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAFQNNLSC---------------- 425
DY DTFAP+A+ TI +++LA + GW+++HLDVKSAF N +
Sbjct: 1604 DYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGH 1663
Query: 424 -----RILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFY-IGESTREVLLAFHV 263
++ K+LYGLKQAPRAWY +++ L GF +S ++ L+ + +++++ +V
Sbjct: 1664 EHKVYKLHKALYGLKQAPRAWYSRIDSHLIQLGFRRSENEATLYLKQNDDGLQLVVSLYV 1723
Query: 262 NXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIE 83
+ ++++ FE+ D G + +LG+++++ + G ++Q YA +++
Sbjct: 1724 DDMLVTGSNVKLLADFKMEMQDVFEMFDLGIMNYFLGMEIYQCSWGIFISQRKYAMDILK 1783
Query: 82 EYNLTNNNGRKYPLDSGAKLGEDE 11
++ L + PL K+ +++
Sbjct: 1784 KFKLESCKEVATPLAQNEKISKND 1807
>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
Length = 623
Score = 361 bits (926), Expect = 6e-97
Identities = 207/599 (34%), Positives = 326/599 (54%), Gaps = 43/599 (7%)
Frame = -1
Query: 1678 FRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYLLKNKKDVFQTFIKFCK 1499
F++TK +ELIH+D+C P+ K+ YF+ FIDD+SR W+Y LK K +VF+ F KF
Sbjct: 18 FKSTKTVELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 77
Query: 1498 LVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYNPQ*NGISKR*NRTLVE 1319
V+ + I +RSD G ++ S F +C++ GI+RQ+TVP +PQ NG+++R NRT++E
Sbjct: 78 HVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILE 137
Query: 1318 AVRFLLHDA-----WWGEALLTANYIINHWLNKALYMKSPMEVWYGFKPNISHFMEFGKT 1154
R +L W EA+ A Y++N K++ K+P E W G KP +SH FG
Sbjct: 138 MARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSI 197
Query: 1153 YYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIIISREIK-----EADTES 989
+ +P EK+ KLDDK++K IFIGY +KGY+L + +TK IISR I E D S
Sbjct: 198 AHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNS 257
Query: 988 ----------FKNDKNIP-KETTKNSSENKNPLDKIETTIPNGFKK*PLWYRLMLQEAEN 842
F+ DK P +E + P + I + +R +QE
Sbjct: 258 NEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFR-SIQELYE 316
Query: 841 FIKGKTIGANLCFPIDLEIPKSPTEAIKKQHWKNVMDEEMAKMKNKNVWRLEELPEGRKE 662
+ + C + E P EAI+K+ W+N MDEE+ ++ + W L LP G K
Sbjct: 317 VTENQENLTLFCLFAECE-PMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 375
Query: 661 VGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKK 482
+G +W+Y K G +++YKARLV +G++Q+ GIDY + FAP+A++ T+ IISLA +
Sbjct: 376 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQN 435
Query: 481 GWELHHLDVKSAFQN---------------------NLSCRILKSLYGLKQAPRAWYKKL 365
W++H +DVKSAF N + R+ K LYGLKQAPRAW ++
Sbjct: 436 KWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRI 495
Query: 364 EEFLSTQGFTKSISDPNLFYIGESTREVLLA-FHVNXXXXXXXXXXXXXXXXXKLREEFE 188
+++ + F K + + YI ++L+A +V+ ++ +EFE
Sbjct: 496 DKYFKEKDFIKCPYE-HALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFE 554
Query: 187 IIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIEEYNLTNNNGRKYPLDSGAKLGEDE 11
+ D G + YLG+++ + +NG + QE YA ++++++ + ++N P++ G KL + E
Sbjct: 555 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKE 613
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 357 bits (916), Expect = 9e-96
Identities = 209/627 (33%), Positives = 342/627 (54%), Gaps = 57/627 (9%)
Frame = -1
Query: 1726 SCVIGKHHKLSFPTQGFRAT-KFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIY 1550
+C +GK + SFP + T K LELIHSD+C PM ++ +G YF+TFIDD+SR W+Y
Sbjct: 493 ACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVY 552
Query: 1549 LLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPY 1370
LKNK +V F F V+ + +I LR+DGG ++ S F C+ GI ++T PY
Sbjct: 553 FLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPY 612
Query: 1369 NPQ*NGISKR*NRTLVEAVRFL-----LHDAWWGEALLTANYIINHWLNKALYM-KSPME 1208
+PQ NG+++R NRTLVE R + L + +W EA+ T+ Y+ N +K+L +PME
Sbjct: 613 SPQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPME 672
Query: 1207 VWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNI 1028
+W G KP++ H FG Y IP EK+RKLD KAK+GIF+GY +KGYR+ + + I
Sbjct: 673 IWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESKGYRVFLLNEEKI 732
Query: 1027 IISREIKEADTESFKND-----KNIPKETTKNSSE--NKNPLDKIETTIPNGFKK----- 884
+S+++ + +++ +D K I NS E N L+ + N F +
Sbjct: 733 EVSKDVTFDEKKTWSHDEKGERKAILSLVKINSQEQGGGNDLNAHIDQVSNAFNQLHISS 792
Query: 883 --------------*PLWYRLM--LQEAENFIKGKTIGANLCFPIDLEIPKSPTEAIKKQ 752
P +R + L + N ++G+ + +C + E P++ EA+K +
Sbjct: 793 RGVQNSHEEGEESVGPRGFRSINNLMDQTNEVEGEALIHEMCLMM-AEEPQALEEAMKDE 851
Query: 751 HWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFT 572
W M EE+ ++ W + P+ + + +W++ +K G K KARLV +GFT
Sbjct: 852 KWIEAMREELRMIEKNKTWEVVARPKDKNVISVKWIFRLKTDASGEAIKRKARLVARGFT 911
Query: 571 QKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAFQN--------------- 437
Q+ G+DY +TFAP+++ TI +I+++A ++GW+L +DVKSAF N
Sbjct: 912 QEYGVDYLETFAPVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLEEEVYIEQPPGF 971
Query: 436 ------NLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVL- 278
++ K+LYGLKQAPRAWY +++ + GF +SI+D FY+ ++++E+L
Sbjct: 972 IEEKEEGKVLKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDA-AFYVKKTSKEILV 1030
Query: 277 LAFHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYA 98
++ +V+ +++ EFE+ D G + +LG+++++ + G L+QE YA
Sbjct: 1031 VSLYVDDIIVTGSNVKEIERFKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYA 1090
Query: 97 SKLIEEYNLTNNNGRKYPLDSGAKLGE 17
KL++++ + PL K+ E
Sbjct: 1091 KKLLKKFGMQECKSVSTPLTPHGKIEE 1117
>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
Length = 1334
Score = 354 bits (908), Expect = 8e-95
Identities = 206/637 (32%), Positives = 336/637 (52%), Gaps = 70/637 (10%)
Frame = -1
Query: 1723 CVIGKHHKLSFPTQG-FRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYL 1547
C+ GK + S P + +++T+ L+L+H+DIC P++ + SG Y + FIDD+SR CW YL
Sbjct: 474 CLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYL 533
Query: 1546 LKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYN 1367
L K + FQ F +F V+ + K+ CLRSD G +YNS F ++CK GIKRQ+T Y
Sbjct: 534 LSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYT 593
Query: 1366 PQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKALYMKSPMEVW 1202
PQ NG+++R NR+++ R +L + +W EA+ A YI+N +KAL +P E W
Sbjct: 594 PQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKW 653
Query: 1201 YGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIII 1022
+KP++ H FG Y L+P +K+ KLD+K+ K + G +K YRL D T I+I
Sbjct: 654 SSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILI 713
Query: 1021 SREIKEADTESFK-NDKNIPKETT-----------------KNSSENKNPLDKIETTIPN 896
SR+++ + ++ DK++ +E N +++ ++ E T+
Sbjct: 714 SRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETVAE 773
Query: 895 GF--------------KK*PLWYR---------LMLQEAENFIKGKTIGAN--LCFPIDL 791
++ P+W + L+ Q+ E+ + IG + +CF
Sbjct: 774 TVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVLITQDEEDEVLALFIGPDDPVCFE--- 830
Query: 790 EIPKSPTEAIKKQHWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSL 611
EA + + W+ M+ E+ ++ N W L ELPE K +G +W++ K G +
Sbjct: 831 -------EAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEV 883
Query: 610 DKYKARLVVQGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAF---- 443
DK+KARLV +G+ Q+ G+D+ + FAP+AK TI I+ LA +KGW + LDVKSAF
Sbjct: 884 DKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGD 943
Query: 442 -----------------QNNLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPN 314
+++ ++ K+LYGLKQAPRAWY ++EEF +GF K +
Sbjct: 944 LKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHT 1003
Query: 313 LFYIGESTREVLLAFHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKS 134
LF E + ++++ +V+ + EEF + D G ++ +LG+++ +
Sbjct: 1004 LFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQD 1063
Query: 133 NNGYVLNQEAYASKLIEEYNLTNNNGRKYPLDSGAKL 23
G +NQ YA+++I++Y + N K P+ G KL
Sbjct: 1064 ERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKL 1100
>gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 354 bits (908), Expect = 8e-95
Identities = 206/637 (32%), Positives = 336/637 (52%), Gaps = 70/637 (10%)
Frame = -1
Query: 1723 CVIGKHHKLSFPTQG-FRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYL 1547
C+ GK + S P + +++T+ L+L+H+DIC P++ + SG Y + FIDD+SR CW YL
Sbjct: 379 CLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYL 438
Query: 1546 LKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYN 1367
L K + FQ F +F V+ + K+ CLRSD G +YNS F ++CK GIKRQ+T Y
Sbjct: 439 LSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYT 498
Query: 1366 PQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKALYMKSPMEVW 1202
PQ NG+++R NR+++ R +L + +W EA+ A YI+N +KAL +P E W
Sbjct: 499 PQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKW 558
Query: 1201 YGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIII 1022
+KP++ H FG Y L+P +K+ KLD+K+ K + G +K YRL D T I+I
Sbjct: 559 SSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILI 618
Query: 1021 SREIKEADTESFK-NDKNIPKETT-----------------KNSSENKNPLDKIETTIPN 896
SR+++ + ++ DK++ +E N +++ ++ E T+
Sbjct: 619 SRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETVAE 678
Query: 895 GF--------------KK*PLWYR---------LMLQEAENFIKGKTIGAN--LCFPIDL 791
++ P+W + L+ Q+ E+ + IG + +CF
Sbjct: 679 TVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVLITQDEEDEVLALFIGPDDPVCFE--- 735
Query: 790 EIPKSPTEAIKKQHWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSL 611
EA + + W+ M+ E+ ++ N W L ELPE K +G +W++ K G +
Sbjct: 736 -------EAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEV 788
Query: 610 DKYKARLVVQGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAF---- 443
DK+KARLV +G+ Q+ G+D+ + FAP+AK TI I+ LA +KGW + LDVKSAF
Sbjct: 789 DKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGD 848
Query: 442 -----------------QNNLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPN 314
+++ ++ K+LYGLKQAPRAWY ++EEF +GF K +
Sbjct: 849 LKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHT 908
Query: 313 LFYIGESTREVLLAFHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKS 134
LF E + ++++ +V+ + EEF + D G ++ +LG+++ +
Sbjct: 909 LFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQD 968
Query: 133 NNGYVLNQEAYASKLIEEYNLTNNNGRKYPLDSGAKL 23
G +NQ YA+++I++Y + N K P+ G KL
Sbjct: 969 ERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKL 1005
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 353 bits (907), Expect = 1e-94
Identities = 206/637 (32%), Positives = 335/637 (52%), Gaps = 70/637 (10%)
Frame = -1
Query: 1723 CVIGKHHKLSFPTQG-FRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYL 1547
C+ GK + S P + +++T+ L+L+H+DIC P++ + SG Y + FIDD+SR CW YL
Sbjct: 474 CLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYL 533
Query: 1546 LKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYN 1367
L K + FQ F +F V+ + K+ CLRSD G +YNS F ++CK GIKRQ+T Y
Sbjct: 534 LSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYT 593
Query: 1366 PQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKALYMKSPMEVW 1202
PQ NG+++R NR+++ R +L + +W EA+ A YI+N +KAL +P E W
Sbjct: 594 PQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKW 653
Query: 1201 YGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIII 1022
+KP++ H FG Y L+P +K+ KLD+K+ K + G +K YRL D T I+I
Sbjct: 654 SSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILI 713
Query: 1021 SREIKEADTESFK-NDKNIPKETT-----------------KNSSENKNPLDKIETTIPN 896
SR+++ + ++ DK++ +E N +++ ++ E T+
Sbjct: 714 SRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETVAE 773
Query: 895 GF--------------KK*PLWYR---------LMLQEAENFIKGKTIGAN--LCFPIDL 791
++ P+W + L+ Q+ E+ + IG +CF
Sbjct: 774 TVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVLITQDEEDEVLALFIGPGDPVCFE--- 830
Query: 790 EIPKSPTEAIKKQHWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSL 611
EA + + W+ M+ E+ ++ N W L ELPE K +G +W++ K G +
Sbjct: 831 -------EAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEV 883
Query: 610 DKYKARLVVQGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAF---- 443
DK+KARLV +G+ Q+ G+D+ + FAP+AK TI I+ LA +KGW + LDVKSAF
Sbjct: 884 DKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGD 943
Query: 442 -----------------QNNLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPN 314
+++ ++ K+LYGLKQAPRAWY ++EEF +GF K +
Sbjct: 944 LKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHT 1003
Query: 313 LFYIGESTREVLLAFHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKS 134
LF E + ++++ +V+ + EEF + D G ++ +LG+++ +
Sbjct: 1004 LFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQD 1063
Query: 133 NNGYVLNQEAYASKLIEEYNLTNNNGRKYPLDSGAKL 23
G +NQ YA+++I++Y + N K P+ G KL
Sbjct: 1064 ERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKL 1100
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 353 bits (905), Expect = 2e-94
Identities = 204/617 (33%), Positives = 328/617 (53%), Gaps = 50/617 (8%)
Frame = -1
Query: 1723 CVIGKHHKLSFPT-QGFRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYL 1547
C+ GK + SFP + +RAT LEL+H+D+C PM ++ G YF+ F DDYSR+ W+Y
Sbjct: 481 CIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYF 540
Query: 1546 LKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYN 1367
LK K + F+TF KF V+ + KI LR+D G ++ S F FC+ GI+R++T PY
Sbjct: 541 LKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAPYT 600
Query: 1366 PQ*NGISKR*NRTLVEAVRFLLH-----DAWWGEALLTANYIINHWLNKALYMKSPMEVW 1202
P+ NG+++R NRT+VE R L D +WGEA+ T Y +N K ++ +P+E W
Sbjct: 601 PEQNGVAERKNRTVVEMARSSLKAKGLPDYFWGEAVATVVYFLNISPTKDVWNTTPLEAW 660
Query: 1201 YGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIII 1022
G KP +SH FG Y L+ KLD+K+ K IF+GY +K YRL + + +II
Sbjct: 661 NGKKPRVSHLRIFGCIAYALV--NFHSKLDEKSTKCIFVGYSLQSKAYRLYNPISGKVII 718
Query: 1021 SR---------------------EIKEADTESFKNDKNIPKETTKNSSENKNPLDKIETT 905
SR ++ D ES + N P + +SS + +P+ T
Sbjct: 719 SRNVVFNEDVSWNFNSGNMMSNIQLLPTDEESAVDFGNSPNSSPVSSSVS-SPIAPSTTV 777
Query: 904 IPNGFKK*PLWYRLMLQEAE-NFIKGKTIGANLCFPIDLEIPKSPTEAIKKQHWKNVMDE 728
P+ P+ R +E + N T+ + F + + P EA+++ WKN M E
Sbjct: 778 APDESSVEPIPLRRSTREKKPNPKYSNTVNTSCQFALLVSDPICYEEAVEQSEWKNAMIE 837
Query: 727 EMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGIDYK 548
E+ ++ + W L + PEG+ +G +W++ K DGS+ K+KARLV +G++Q++G+D+
Sbjct: 838 EIQAIERNSTWELVDAPEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDFD 897
Query: 547 DTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAFQN---------------------NL 431
+TF+P+A+ T+ +++LA + ++ DVKSAF N N
Sbjct: 898 ETFSPVARFETVRVVLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENK 957
Query: 430 SCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVLL-AFHVNXX 254
++ K+LYGLKQAPRAWY K++ F GF +S ++P L+ + T E LL +V+
Sbjct: 958 VYKLRKALYGLKQAPRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDDM 1017
Query: 253 XXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIEEYN 74
+ FE+ D G ++ +LGL++ + +G ++Q+ YA L++++
Sbjct: 1018 IYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLLKKFQ 1077
Query: 73 LTNNNGRKYPLDSGAKL 23
+ N P++ KL
Sbjct: 1078 MMNCEVATTPMNINEKL 1094
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 345 bits (886), Expect = 3e-92
Identities = 203/612 (33%), Positives = 327/612 (53%), Gaps = 41/612 (6%)
Frame = -1
Query: 1723 CVIGKHHKLSFPT-QGFRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYL 1547
C+ GK K FP + RA+ LE+IH+D+C PM + G YF+ F DD+SR W+Y
Sbjct: 587 CIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYF 646
Query: 1546 LKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYN 1367
L++K + F+TF KF V+ + I LR+D ++ S FK FC+ +G+ R++T PY+
Sbjct: 647 LQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRXGEFLSNDFKVFCEEEGLHRELTTPYS 706
Query: 1366 PQ*NGISKR*NRTLVEAVRFL-----LHDAWWGEALLTANYIINHWLNKALYMKSPMEVW 1202
P+ NG+++R NRT+VE R + L + +W E + TA Y++N KA+ ++P E W
Sbjct: 707 PEQNGVAERKNRTVVEMARSMMXAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAW 766
Query: 1201 YGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIII 1022
YG KP +SH FG Y L + KLD+K+ K IFIGY + +KGY+L + + II+
Sbjct: 767 YGRKPWVSHLKVFGSVAYTLXBSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIV 826
Query: 1021 SREI----KEADTESFKNDK---NIPKETTKNSSENKNPLDKIETT-IPNGFKK*P-LWY 869
SR + K + T D I E+ SE++ P +I + P+ P L
Sbjct: 827 SRNVVFDEKASXTWRVSEDGALVEISSESEMAQSEDQQPSVQIPXSPTPSHSPSSPNLSX 886
Query: 868 RLMLQEAENFIKGKTIGANLCFPIDLEI----PKSPTEAIKKQHWKNVMDEEMAKMKNKN 701
Q +E K + + P + EA++K+ W + M EE+A ++
Sbjct: 887 SSSSQSSEETPPRKFRSLRDIYETTQVLFVADPTTFEEAVEKEEWCSAMKEEIAAIEKNE 946
Query: 700 VWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGIDYKDTFAPIAKM 521
W L ELPE + +G +W++ K DGS+ K+KARLV +G+ Q+ G+DY DTF+P+A+
Sbjct: 947 TWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARF 1006
Query: 520 RTI*SIISLATKKGWELHHLDVKSAFQNNLSC---------------------RILKSLY 404
T+ ++++LA W ++ DVKSAF N R+ +LY
Sbjct: 1007 ETVRTLLALAAHMHWCVYQFDVKSAFLNGELVEEVYXSQPEGFIVPDKEEHVYRLKXALY 1066
Query: 403 GLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVL-LAFHVNXXXXXXXXXXX 227
GLKQAPRAWY K++ + GF KS S+PNL+ + ++L + +V+
Sbjct: 1067 GLKQAPRAWYSKIDSYFVENGFEKSKSEPNLYLKRQGKNDLLIICLYVDDMIYMGSSSSL 1126
Query: 226 XXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIEEYNLTNNNGRKY 47
++++FE+ D G + +LGL++ + +G ++Q YA L++++N+ N
Sbjct: 1127 INEFKACMKKKFEMSDLGLLHFFLGLEVKQVEDGVFVSQRKYAVDLLKKFNMLNCKVVAI 1186
Query: 46 PLDSGAKLGEDE 11
P++S KL ++
Sbjct: 1187 PMNSNEKLQAED 1198
>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
Length = 1358
Score = 342 bits (877), Expect = 3e-91
Identities = 200/604 (33%), Positives = 327/604 (54%), Gaps = 36/604 (5%)
Frame = -1
Query: 1726 SCVIGKHHKLSFPTQGFRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYL 1547
+CV K K FP+ R T LELIHSDIC+ T G YFI+F DD SRY ++YL
Sbjct: 528 TCVKSKFTKKPFPSVPKRNTSLLELIHSDICELNGVLTRGGKRYFISFCDDSSRYLYVYL 587
Query: 1546 LKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYN 1367
L +K + F+ F + V+ +K +I LRSD G +Y + F FC+ +GI + T PY
Sbjct: 588 LHSKDEAFEAFKIYKAEVEKQKEKRIKILRSDRGGEYFNRRFDAFCEEEGIIHERTAPYT 647
Query: 1366 PQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANYIINHWLNKALYMKSPMEVW 1202
PQ NG+++R NRTLVE +L+ + WGEA+LTA Y+ N + + SP E+W
Sbjct: 648 PQQNGLAERKNRTLVEMANCMLNQSGLPRNMWGEAVLTACYVHNR-ITSRVIPTSPYELW 706
Query: 1201 YGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIII 1022
G KPN+ H +G YY +P K KL ++A K +FIGY + +K YRLLD E+ ++
Sbjct: 707 KGRKPNLEHLRVWGCLAYYRVPDPKTLKLGERAFKSVFIGYASHSKSYRLLDDESGIVVE 766
Query: 1021 SREIKEADTESFKNDKNIPKETTKNSSENK-NPLDKIE-----TTIPNGFKK*PLWYRLM 860
SR+++ + + ++D+N TT ++SE + P +E T + ++ +
Sbjct: 767 SRDVEFFENKFSRDDENSNGTTTSSTSEKRVQPSPIVEEPRKSTRVRKEKSYGDDFFSYL 826
Query: 859 LQEAENFIKGKTIGANLCFPIDL-EIPKSPTEAIKKQH---WKNVMDEEMAKMKNKNVWR 692
++ + K + + F ++L + PK+ EA+ + WK +++EM + W
Sbjct: 827 VEGTQ-----KKVMREVIFAVNLDDDPKTFNEAMSSRDAPLWKEAVNDEMDSIMGNGTWE 881
Query: 691 LEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGIDYKDTFAPIAKMRTI 512
L +LP+G+K +G +W++ K PDGS+ YKARLV +G+ Q+EG+DY DT+AP+A++ +I
Sbjct: 882 LADLPKGKKPIGSKWIFKRKYHPDGSISAYKARLVAKGYRQREGVDYFDTYAPVARIGSI 941
Query: 511 *SIISLATKKGWELHHLDVKSAF---------------------QNNLSCRILKSLYGLK 395
++I+++ KG +H +DVK+AF Q N CR++KSLYGLK
Sbjct: 942 RTLIAVSALKGLYIHQMDVKTAFLNGYLNEEIYLEQPEGFVMPGQENKVCRLIKSLYGLK 1001
Query: 394 QAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVLLAFHVNXXXXXXXXXXXXXXX 215
QAP+ W+++ + ++ GF + +D ++ E V++ +V+
Sbjct: 1002 QAPKQWHERFDTTVTAFGFRHNSADRCIYTKCEPGYTVVICLYVDDMLIISTHLEGISET 1061
Query: 214 XXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIEEYNLTNNNGRKYPLDS 35
L F++ D G V+ LG+++ ++ + L+Q Y K++ ++ N P D
Sbjct: 1062 KKYLSLNFKMKDLGEVDTILGIKVKRAGSQISLSQSHYIEKILTKFQHLNIKEFNTPFDP 1121
Query: 34 GAKL 23
KL
Sbjct: 1122 SVKL 1125
>emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]
Length = 894
Score = 339 bits (870), Expect = 2e-90
Identities = 191/571 (33%), Positives = 308/571 (53%), Gaps = 30/571 (5%)
Frame = -1
Query: 1627 MSYKTHSGYIYFITFIDDYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDG 1448
++++ + Y Y +DY+R CW+Y +K K +VF F +F LV+ + I LRSD
Sbjct: 101 INWENAAEYAYAGVTQNDYTRMCWVYFIKLKNEVFSVFKQFKALVENQSNLSIKILRSDN 160
Query: 1447 GTKYNSIIFKDFCKNKGIKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLHDA-----WWG 1283
GT+Y S F +FC GI+ Q+T PY PQ NG+S+R NRT++E R LL + +W
Sbjct: 161 GTEYTSSQFVEFCSTAGIECQLTTPYTPQQNGVSERKNRTVMEMARCLLFEKKMPSNFWA 220
Query: 1282 EALLTANYIINHWLNKALYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKA 1103
EA+ T+ Y++N K+L K+P E WYG KP ++H FG YY +P+ K+ KLD +A
Sbjct: 221 EAVNTSVYLLNRLPTKSLKNKTPYEEWYGVKPFVNHLKIFGSICYYHVPEPKRSKLDSRA 280
Query: 1102 KKGIFIGYPTGTKGYRLLDMETKNIIISREIK--EADTESFKNDKNIPKETTKNSSENKN 929
+KGI IGY T TKGYR+ ++T +++SR +K E T KN K + N+ E+
Sbjct: 281 QKGILIGYGTSTKGYRIFCLQTNKVVLSRNVKVDEMATWDCKNKKYAQSDVDFNNHEDFQ 340
Query: 928 PLDKIETTIPNGFKK-*PLWYRLMLQEAENFIKGKTIGANLCFPIDLEIPKSPTEAIKKQ 752
++ G + ++ R L E P S EA +
Sbjct: 341 TSKSVDDFPVRGIRSLEDIYQRCSLAITE--------------------PTSYVEAKDSE 380
Query: 751 HWKNVMDEEMAKMKNKN-VWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGF 575
W+ M EE+ KM NKN W+L E P+ K +G +W++ KL DGS+ K+KA+LVV+G+
Sbjct: 381 AWRRAMQEEL-KMINKNETWQLVERPKNHKVIGVKWVFKTKLNSDGSICKHKAKLVVKGY 439
Query: 574 TQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAFQNNLSCR--------- 422
Q+ G+DYK+TFAP+A+ TI + LA + W +H LDVKSAF N +
Sbjct: 440 AQQYGVDYKETFAPVARYDTIRLLFVLAAQNSWHIHQLDVKSAFLNGFVDKEIYVEQPDG 499
Query: 421 ------------ILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVL 278
+ K+LYGLKQAPRAWY+ +++ L+ GF +S S+ L+ + ++
Sbjct: 500 VVAPSKEDYVYLLRKALYGLKQAPRAWYETMDKHLTKLGFVRSQSEATLYVKTNDVQLLI 559
Query: 277 LAFHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYA 98
++ +V+ ++ + FE+ D G ++ +LG+++ +S + + Q+ YA
Sbjct: 560 ISLYVDDMLVTGNQPKLIQSFKDEMNKVFEMTDLGAMKYFLGMEVMQSCSRIFICQQKYA 619
Query: 97 SKLIEEYNLTNNNGRKYPLDSGAKLGEDEAA 5
+++++ + + P+ + KL +D+ +
Sbjct: 620 MDMLKKFKMQDYKPVSTPMTTNEKLSKDDGS 650
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 339 bits (869), Expect = 3e-90
Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 35/606 (5%)
Frame = -1
Query: 1723 CVIGKHHKLSFPT-QGFRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSRYCWIYL 1547
C+ GK K FP + RA+ LE+IH+D+C PM + G YF+ F DD+SR W+Y
Sbjct: 461 CIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYF 520
Query: 1546 LKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQVTVPYN 1367
L++K + F+TF KF V+ + I LR+D G ++ S FK F + +G+ R++T PY+
Sbjct: 521 LQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTTPYS 580
Query: 1366 PQ*NGISKR*NRTLVEAVRFL-----LHDAWWGEALLTANYIINHWLNKALYMKSPMEVW 1202
P NG+++R NRT+VE R + L + +W E + TA Y++N KA+ ++P E W
Sbjct: 581 PXQNGVAERKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAW 640
Query: 1201 YGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDMETKNIII 1022
YG KP +SH FG Y LI + KLD+K+ K IFIGY + +KGY+L + + II+
Sbjct: 641 YGRKPWVSHLKVFGSVAYTLIDSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIV 700
Query: 1021 SREI----KEADTESFKND---KNIPKETTKNSSENKNPLDKIETTIPNGFKK*PLWYRL 863
SR + K + T D I E+ SE++ P +I T P F+
Sbjct: 701 SRNVVFDEKASWTWRVSEDGALVEISSESEVAQSEDQQPSXQIPATDPTTFE-------- 752
Query: 862 MLQEAENFIKGKTIGANLCFPIDLEIPKSPTEAIKKQHWKNVMDEEMAKMKNKNVWRLEE 683
EA++K+ W + M EE+A ++ W L E
Sbjct: 753 -------------------------------EAVEKEEWCSAMKEEIAAIEKNETWELVE 781
Query: 682 LPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGIDYKDTFAPIAKMRTI*SI 503
LPE + +G +W++ K DGS+ K+KARLV +G+ Q+ G+DY DTF+P+A+ T+ ++
Sbjct: 782 LPEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETVRTL 841
Query: 502 ISLATKKGWELHHLDVKSAFQNNLSC---------------------RILKSLYGLKQAP 386
++LA W + DVKSAF N R+ K+LYGLKQAP
Sbjct: 842 LALAAHMHWCXYQFDVKSAFLNGELVEEVYVSQXEGFIVPXKEEHVYRLKKALYGLKQAP 901
Query: 385 RAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVL-LAFHVNXXXXXXXXXXXXXXXXX 209
RAWY K++ + GF +S S+PNL+ + ++L + +V+
Sbjct: 902 RAWYSKIDSYFVENGFERSKSEPNLYLKRQGKNDLLIICLYVDDMIYMGSSSSLINEFKA 961
Query: 208 KLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIEEYNLTNNNGRKYPLDSGA 29
++++FE+ + G + +L L++ + +G ++Q Y L++++N+ N ++S
Sbjct: 962 CMKKKFEMSBLGLLHFFLXLEVKQVEDGVFVSQRKYXVDLLKKFNMLNCKVVATXMNSNE 1021
Query: 28 KLGEDE 11
KL ++
Sbjct: 1022 KLQAED 1027
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 338 bits (868), Expect = 3e-90
Identities = 211/642 (32%), Positives = 321/642 (50%), Gaps = 55/642 (8%)
Frame = -1
Query: 1783 KQNLDGSPNKISIPKQNY*SCVIGKHHKLSFPTQGFRATKFLELIHSDICDPMSYKTHSG 1604
+Q L K+S+P + C+ K H+L F T R LEL+HSD+ + G
Sbjct: 433 EQKLIPGLTKVSLPLCEH--CITSKQHRLKFSTSNSRGKVVLELVHSDVWQA-PVPSLGG 489
Query: 1603 YIYFITFIDDYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSII 1424
YF++FIDDYSR CW+Y +K K DVF TF F V+ KI C R+D G +Y S
Sbjct: 490 AKYFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEE 549
Query: 1423 FKDFCKNKGIKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLHDA-----WWGEALLTANY 1259
F DFCK +GIKRQ TV Y PQ NG+++R NRTL+E R +L A +W EA+ TA Y
Sbjct: 550 FDDFCKKEGIKRQFTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACY 609
Query: 1258 IINHWLNKALYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGY 1079
++N + A+ +K+PME+W G + S+ FG Y + ++ KLD K++K F+GY
Sbjct: 610 LVNRAPSTAIELKTPMEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGY 669
Query: 1078 PTGTKGYRLLDMETKNIIISREI---------KEADTESFKNDK-----NIPKETTKNSS 941
G KGYRL D ++ISR++ E D + K + +E ++SS
Sbjct: 670 ADGVKGYRLWDPTAHKVVISRDVIFVEDRLQRGEVDDSTEKEKPETTQIQVEEEFEQDSS 729
Query: 940 ENKNPLDKIE--------TTIPNGFKK*PLWYRLMLQEAENFIKGKTIGANLCFPIDLEI 785
E + ++ E T + K+ P W+ + E C +
Sbjct: 730 EAEPAHEEPEPESSGAPTTRQSDREKRRPTWHSDYVMEG---------NVAYCLLTEDGE 780
Query: 784 PKSPTEAIKK---QHWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGS 614
P + EAI W M EE+ + N W L LP+GRK +G +W++ +K D
Sbjct: 781 PSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQ 840
Query: 613 LDKYKARLVVQGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAF--- 443
+++Y+ARLVV+G+ QKEGID+ + F+P+ ++ T+ ++++ L LDVK+AF
Sbjct: 841 VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHG 900
Query: 442 ------------------QNNLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDP 317
NL CR+ KSLYGLKQAPR WYK+ + F+ G+ + +DP
Sbjct: 901 DLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADP 960
Query: 316 NLFY--IGESTREVLLAFHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQL 143
++ G+ V+L +V+ +L EFE+ D G LG+Q+
Sbjct: 961 CAYFKRFGKD-NFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQI 1019
Query: 142 H--KSNNGYVLNQEAYASKLIEEYNLTNNNGRKYPLDSGAKL 23
H + N L+Q+ Y K++ +++ + PL K+
Sbjct: 1020 HRDRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLKV 1061
>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
copia-type polyprotein [Glycine max]
Length = 1042
Score = 337 bits (865), Expect = 8e-90
Identities = 193/622 (31%), Positives = 325/622 (52%), Gaps = 42/622 (6%)
Frame = -1
Query: 1756 KISIPKQNY*SCVIGKHHKLSFPTQG-FRATKFLELIHSDICDPMSYKTHSGYIYFITFI 1580
+I+ P Q +C++GKH + SFP + RA + L+L+++D+C P++ + YF+ FI
Sbjct: 185 QINHPNQLCEACLLGKHARRSFPKEANSRAKEPLQLVYTDVCGPINPPSCGNNKYFLLFI 244
Query: 1579 DDYSRYCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNK 1400
DDYSR W+Y LK K + F F F LV+ + Y I LRSD G ++ S F +FC+
Sbjct: 245 DDYSRKTWVYFLKQKSEAFVAFKNFKALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKY 304
Query: 1399 GIKRQVTVPYNPQ*NGISKR*NRTLVEAVRFLLH-----DAWWGEALLTANYIINHWLNK 1235
GI+R +TVP +PQ NG+++R NRT++ R +L +W EA+ A Y+ N K
Sbjct: 305 GIRRPLTVPRSPQQNGVAERKNRTILNMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTK 364
Query: 1234 ALYMKSPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYR 1055
+ ++P E W G KP + H FG Y +P + + KLDD+++K +FIGY +KGY+
Sbjct: 365 NVKDQTPQEAWSGVKPRVDHLRVFGSIAYAHVPDQGRFKLDDRSEKHVFIGYDASSKGYK 424
Query: 1054 LLDMETKNIIISREI------------KEADTESFKNDKNIPKE--TTKNSSENKNPLDK 917
L + I+SR++ KE + F + I +E T +S+ +P
Sbjct: 425 LYNPNNGKTIVSRDVEFYEEGTWNWEEKEDTYDFFPYFEEIDEEALTPNDSTPALSPTPS 484
Query: 916 IETTIPNGFKK*PLWYRLMLQEAENFIKGKTIGANLCFPIDLEIPKSPTEAIKKQHWKNV 737
+ R M E + + + I C +D + P + EA+K + W+
Sbjct: 485 TNEASSSSEGSSSERPRRMRNIQELYDETEVINDLFCLFVDSK-PLNFDEAMKDKRWRQA 543
Query: 736 MDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKYKARLVVQGFTQKEGI 557
M+EE+ ++ N W L LP+G + +G +W++ +K G ++++KARLV +G+ Q+ +
Sbjct: 544 MEEEIKAIEKNNTWELSSLPKGHEAIGVKWVFKIKKNAKGEVERHKARLVAKGYKQQYEV 603
Query: 556 DYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAF---------------------Q 440
DY + FAP+A+M TI +ISLA + W + DVKSAF Q
Sbjct: 604 DYDEVFAPVARMETIRLLISLAAQMKWRIFQFDVKSAFLNGYLEEDVYVEQPMGFVIEGQ 663
Query: 439 NNLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFYIGESTREVL-LAFHV 263
++ K+LYGLKQAPRAW ++++ GF ++ L+ + +VL + +V
Sbjct: 664 EGKVLKLNKALYGLKQAPRAWNTHIDKYFQDNGFVHCQNEYALYVKTFNNGDVLFICLYV 723
Query: 262 NXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNGYVLNQEAYASKLIE 83
+ + EF++ D G + YLG+++ ++ NG ++QE Y ++++
Sbjct: 724 DDLIFTGNNPNLFEDFKESMSREFDMTDMGLMSYYLGMEVKQTQNGIFVSQERYTKEVLK 783
Query: 82 EYNLTNNNGRKYPLDSGAKLGE 17
++N+ + N P++ G KL +
Sbjct: 784 KFNMLDCNPVNTPMEGGLKLSK 805
>gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1307
Score = 337 bits (863), Expect = 1e-89
Identities = 210/634 (33%), Positives = 321/634 (50%), Gaps = 61/634 (9%)
Frame = -1
Query: 1741 KQNY*SCVIGKHHKLSFP-TQGFRATKFLELIHSDICDPMSYKTHSGYIYFITFIDDYSR 1565
K+ SC++GK + FP +RA++ LEL+H D+C P++ T + Y + IDD++R
Sbjct: 425 KETCGSCLLGKQARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTR 484
Query: 1564 YCWIYLLKNKKDVFQTFIKFCKLVQTKKPYKIGCLRSDGGTKYNSIIFKDFCKNKGIKRQ 1385
Y W LLK K + F+ F F V+ + KI R+D G ++ S F+DFC +GI R
Sbjct: 485 YMWSMLLKEKSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRH 544
Query: 1384 VTVPYNPQ*NGISKR*NRTLVEAVRFLLH-----DAWWGEALLTANYIINHWLNKALYMK 1220
+T PY PQ NG+ +R NRTL+ R +L + WGEA+ + YIIN ++L +
Sbjct: 545 LTAPYTPQQNGVVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQ 604
Query: 1219 SPMEVWYGFKPNISHFMEFGKTYYYLIPKEKQRKLDDKAKKGIFIGYPTGTKGYRLLDME 1040
+P EV+ KPN+ H FG Y I RKLDD++K +++G G+K YRLLD
Sbjct: 605 TPYEVFKQRKPNVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPT 664
Query: 1039 TKNII---------------ISREIKEADTESFKNDKNIPKETTKNSSENKNPLDK---- 917
+ II S + E + +I ET KN E++N ++
Sbjct: 665 NRKIIKWNNSDSETRDISGTFSLTLGEFGNNGIQESDDI--ETEKNGEESENSHEEEGEN 722
Query: 916 ---------IETTIPNGFKK*PLWYRLMLQEAE-NFIKGKTI-----GANLCFPIDLEIP 782
E T P+ P R Q + N++ + G + I+ E P
Sbjct: 723 EHNEQEQIDAEETQPSHATPLPTLRRSTRQVGKPNYLDDYVLMAEIEGEQVLLAINDE-P 781
Query: 781 KSPTEAIKKQHWKNVMDEEMAKMKNKNVWRLEELPEGRKEVGCRWLYTVKLKPDGSLDKY 602
EA K + W++ EE+ ++ W L +LP RK +G +W++ +K DGS++KY
Sbjct: 782 WDFKEANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDGSINKY 841
Query: 601 KARLVVQGFTQKEGIDYKDTFAPIAKMRTI*SIISLATKKGWELHHLDVKSAF------- 443
KARLV +G+ Q+ GIDY + FA +A++ TI II+LA GWE+HHLDVK+AF
Sbjct: 842 KARLVAKGYVQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGELRE 901
Query: 442 --------------QNNLSCRILKSLYGLKQAPRAWYKKLEEFLSTQGFTKSISDPNLFY 305
++ K+LYGLKQAPRAW KL + L F K +P+++
Sbjct: 902 DVYVTQPEGFTNKDNEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVYR 961
Query: 304 IGESTREVLLAFHVNXXXXXXXXXXXXXXXXXKLREEFEIIDSGNVECYLGLQLHKSNNG 125
E + +++A +V+ + +FE+ D G + YLG+++ NG
Sbjct: 962 RQEEKKLLIVAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRKNG 1021
Query: 124 YVLNQEAYASKLIEEYNLTNNNGRKYPLDSGAKL 23
+L QE YA K+IEE ++N N P+ +G +L
Sbjct: 1022 IILRQERYAMKIIEEAGMSNCNPVLIPMAAGLEL 1055