BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00015428
         (810 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE77788.1| unknown [Picea sitchensis]                             292   4e-77
ref|XP_002307429.2| basal transcription factor complex subunit-r...   229   1e-57
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ...   227   4e-57
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   221   3e-55
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   220   5e-55
ref|XP_006347459.1| PREDICTED: general transcription factor IIH ...   219   7e-55
ref|XP_004241513.1| PREDICTED: general transcription factor IIH ...   219   7e-55
ref|XP_006828057.1| hypothetical protein AMTR_s00008p00264310, p...   217   4e-54
ref|XP_002532948.1| RNA polymerase II transcription factor B sub...   217   4e-54
gb|EOY16262.1| Basal transcription factor complex subunit-relate...   216   6e-54
gb|EOY16261.1| Basal transcription factor complex subunit-relate...   216   6e-54
gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus pe...   213   6e-53
ref|XP_006472763.1| PREDICTED: general transcription factor IIH ...   211   3e-52
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ...   209   7e-52
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ...   209   7e-52
ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group] g...   207   4e-51
ref|XP_004500559.1| PREDICTED: general transcription factor IIH ...   205   2e-50
ref|XP_004500558.1| PREDICTED: general transcription factor IIH ...   205   2e-50
ref|XP_003601046.1| General transcription factor IIH subunit [Me...   204   3e-50
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps...   202   9e-50

>gb|ADE77788.1| unknown [Picea sitchensis]
          Length = 306

 Score =  292 bits (747), Expect(2) = 4e-77
 Identities = 146/214 (68%), Positives = 169/214 (78%), Gaps = 6/214 (2%)
 Frame = -2

Query: 626 SXSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTT------ 465
           S +    AS LTF+QFLEH  AFFNS+LLLHQ+N LVVIGTG N+CEFIYDS+T      
Sbjct: 34  SATSSGQASSLTFSQFLEHVLAFFNSLLLLHQMNQLVVIGTGTNSCEFIYDSSTTNSEYK 93

Query: 464 KVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRV 285
           K K+ K   EF+TPST+I Q LE+FV++D  L  NN  TKN++          LCYIQR+
Sbjct: 94  KSKDTKCSQEFLTPSTIIVQQLEDFVRRDQALNTNNNATKNIHSLLSGSLSMALCYIQRI 153

Query: 284 IRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASH 105
           IR    HPQPRILCLQGSPDGPQQ+V +MNAIFSAQRSM+P+D+CIVGS+HSAFLQQASH
Sbjct: 154 IRGGPSHPQPRILCLQGSPDGPQQYVAIMNAIFSAQRSMVPVDSCIVGSQHSAFLQQASH 213

Query: 104 ITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQ 3
           ITGGIYLKPQ ++GLFQFLAMVFATDLHSRRFLQ
Sbjct: 214 ITGGIYLKPQQLEGLFQFLAMVFATDLHSRRFLQ 247



 Score = 23.9 bits (50), Expect(2) = 4e-77
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 667 MDSSAANAPQDDVSL 623
           M S+ +N PQDDVSL
Sbjct: 6   MASAGSNPPQDDVSL 20


>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
           [Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
           transcription factor complex subunit-related family
           protein [Populus trichocarpa]
          Length = 298

 Score =  229 bits (583), Expect = 1e-57
 Identities = 119/202 (58%), Positives = 147/202 (72%), Gaps = 2/202 (0%)
 Frame = -2

Query: 602 SPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTP 423
           S L+F+QFL H  AF NSILLL+QLN +VVI +G NTC++IYDS++   +L G  +   P
Sbjct: 31  SSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYIYDSSSDASQL-GSEDGRMP 89

Query: 422 STL--ISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRI 249
           S    + Q LEEF+ KD +L K  ++               LCYIQRV RS   HPQPRI
Sbjct: 90  SLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRVFRSGPLHPQPRI 149

Query: 248 LCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFV 69
           LCLQGSPDGP+Q+V VMNAIFSAQRSM+PID+C VG+ +SAFLQQAS+ITGG+Y+KPQ +
Sbjct: 150 LCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQQASYITGGVYVKPQHL 209

Query: 68  QGLFQFLAMVFATDLHSRRFLQ 3
            GLFQ+L  VFATDLHSR F+Q
Sbjct: 210 DGLFQYLTTVFATDLHSRSFIQ 231


>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Citrus sinensis]
          Length = 298

 Score =  227 bits (578), Expect = 4e-57
 Identities = 112/201 (55%), Positives = 145/201 (72%)
 Frame = -2

Query: 605 ASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMT 426
           +S L+F+QFL H  AFFN+IL L+QLN +VVI TG N+C+++YDS++   +  G     +
Sbjct: 29  SSSLSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS 88

Query: 425 PSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRIL 246
               + QNLEEF+ KD +L K   E +             LCYIQRV RS   HPQPRIL
Sbjct: 89  LCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRIL 148

Query: 245 CLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQ 66
           CLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFLQQAS+ITGG++ KPQ + 
Sbjct: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 208

Query: 65  GLFQFLAMVFATDLHSRRFLQ 3
           GLFQ+L  +F TDLHSR FLQ
Sbjct: 209 GLFQYLLTIFGTDLHSRNFLQ 229


>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  221 bits (562), Expect = 3e-55
 Identities = 118/200 (59%), Positives = 143/200 (71%), Gaps = 2/200 (1%)
 Frame = -2

Query: 596 LTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTP-- 423
           L F++FL H  AF NSILL++QLN +VVI TG N+C FI+DS++        N  M    
Sbjct: 32  LPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSSSVPANPNLENGRMPALC 91

Query: 422 STLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRILC 243
           S L+ Q LEEFV  D +L K                   LCYIQRV R+   HPQPRILC
Sbjct: 92  SNLL-QKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILC 150

Query: 242 LQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQG 63
           LQGSPDGP+Q+V VMNAIFSAQRSM+PID+C++G++HSAFLQQAS+ITGG+YLKPQ + G
Sbjct: 151 LQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDG 210

Query: 62  LFQFLAMVFATDLHSRRFLQ 3
           LFQ+L+ VFATDLHSRRFLQ
Sbjct: 211 LFQYLSTVFATDLHSRRFLQ 230


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score =  220 bits (560), Expect = 5e-55
 Identities = 113/202 (55%), Positives = 146/202 (72%), Gaps = 2/202 (0%)
 Frame = -2

Query: 602 SPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTP 423
           S L F++FL H  AF NSIL+L+QLN +VVIGTG  +C+++Y+S++      G  +   P
Sbjct: 30  SALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNH--GLEDGRMP 87

Query: 422 S--TLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRI 249
           +  T + +NLEEFV  D +  K + +   M           LCYIQ+V RS + HPQPRI
Sbjct: 88  ALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRI 147

Query: 248 LCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFV 69
           LCLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +GS +SAFLQQAS+ITGG+YLKPQ +
Sbjct: 148 LCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQM 207

Query: 68  QGLFQFLAMVFATDLHSRRFLQ 3
            GLFQ+L+ VF TDLHSR FLQ
Sbjct: 208 DGLFQYLSTVFGTDLHSRTFLQ 229


>ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
           tuberosum]
          Length = 290

 Score =  219 bits (559), Expect = 7e-55
 Identities = 110/197 (55%), Positives = 140/197 (71%)
 Frame = -2

Query: 593 TFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTPSTL 414
           TF +F+ H  AF NSILLL+Q+N +VVI TG N+C++++DS+T           M  +  
Sbjct: 36  TFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSS---------MQRAEC 86

Query: 413 ISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRILCLQG 234
           + + LE+FV KD  L + ++     +          LCYIQRV RS   HPQPRILCL G
Sbjct: 87  LLEKLEDFVDKDESLSQEDSVDGVGFSLLSGSLSMALCYIQRVFRSGPLHPQPRILCLHG 146

Query: 233 SPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQGLFQ 54
           SPDGP Q+V VMN+IFSAQRSM+PID+C++GS+HSAFLQQAS+ITGG+YLKPQ   GLFQ
Sbjct: 147 SPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQ 206

Query: 53  FLAMVFATDLHSRRFLQ 3
           +L+ VFATDLHSR FLQ
Sbjct: 207 YLSTVFATDLHSRSFLQ 223


>ref|XP_004241513.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
           lycopersicum]
          Length = 290

 Score =  219 bits (559), Expect = 7e-55
 Identities = 110/197 (55%), Positives = 140/197 (71%)
 Frame = -2

Query: 593 TFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTPSTL 414
           TF +F+ H  AF NSILLL+Q+N +VVI TG N+C++++DS+T           M  +  
Sbjct: 36  TFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSS---------MQRAEC 86

Query: 413 ISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRILCLQG 234
           + + LE+FV KD  L + ++     +          LCYIQRV RS   HPQPRILCL G
Sbjct: 87  LLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALCYIQRVFRSGPLHPQPRILCLHG 146

Query: 233 SPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQGLFQ 54
           SPDGP Q+V VMN+IFSAQRSM+PID+C++GS+HSAFLQQAS+ITGG+YLKPQ   GLFQ
Sbjct: 147 SPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQ 206

Query: 53  FLAMVFATDLHSRRFLQ 3
           +L+ VFATDLHSR FLQ
Sbjct: 207 YLSTVFATDLHSRSFLQ 223


>ref|XP_006828057.1| hypothetical protein AMTR_s00008p00264310, partial [Amborella
           trichopoda] gi|548832692|gb|ERM95473.1| hypothetical
           protein AMTR_s00008p00264310, partial [Amborella
           trichopoda]
          Length = 277

 Score =  217 bits (552), Expect = 4e-54
 Identities = 112/198 (56%), Positives = 142/198 (71%), Gaps = 2/198 (1%)
 Frame = -2

Query: 590 FAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTP--ST 417
           F+QFL     F NSILLL+QLN LVVI TG+N+C+++YDS+    E +  +    P  S 
Sbjct: 36  FSQFLNQVLPFLNSILLLNQLNQLVVIATGVNSCDYLYDSSRVGHESEKRSTKGIPGHSL 95

Query: 416 LISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRILCLQ 237
            I Q LE+F+ KD +L  ++     +           LCYIQR++R+   HPQPRILCLQ
Sbjct: 96  EILQKLEDFIAKDQQLSNSDEAPGKICSLLSGSLSLALCYIQRILRTGPVHPQPRILCLQ 155

Query: 236 GSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQGLF 57
            SPDG +Q+V +MNAIFSAQRSM+PID+C+VGSE SAFLQQAS+ITGG+Y KPQ + GLF
Sbjct: 156 ASPDGSEQYVAIMNAIFSAQRSMVPIDSCVVGSEDSAFLQQASYITGGVYQKPQHLDGLF 215

Query: 56  QFLAMVFATDLHSRRFLQ 3
           Q L+MVFATDLHSRRFL+
Sbjct: 216 QCLSMVFATDLHSRRFLK 233


>ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
           communis] gi|223527277|gb|EEF29432.1| RNA polymerase II
           transcription factor B subunit, putative [Ricinus
           communis]
          Length = 266

 Score =  217 bits (552), Expect = 4e-54
 Identities = 112/201 (55%), Positives = 140/201 (69%), Gaps = 1/201 (0%)
 Frame = -2

Query: 602 SPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTP 423
           S L F+QFL H  AF NSILLL+QLN +VVI  G N+C++IYDS+  +            
Sbjct: 30  SSLPFSQFLSHVLAFLNSILLLNQLNQVVVIANGYNSCDYIYDSSLVMNHSSDEGRIPAL 89

Query: 422 STLISQNLEEFVKKDHELYKNN-TETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRIL 246
            + + Q LE+F+ +D +L K   ++ K             LCYIQR+ RS   HPQPRIL
Sbjct: 90  YSDLLQKLEDFMIRDEKLGKGEESKRKIASSLLSGSLSMALCYIQRIFRSGPLHPQPRIL 149

Query: 245 CLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQ 66
           CLQGSPDGP+Q+V VMN+IFSAQRSM+PID+C VG  +SAFLQQAS+ITGG+Y+KPQ + 
Sbjct: 150 CLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCYVGGHNSAFLQQASYITGGVYVKPQHLD 209

Query: 65  GLFQFLAMVFATDLHSRRFLQ 3
           GLFQ+L  VFATDLHSR FLQ
Sbjct: 210 GLFQYLVTVFATDLHSRSFLQ 230


>gb|EOY16262.1| Basal transcription factor complex subunit-related isoform 2
           [Theobroma cacao]
          Length = 274

 Score =  216 bits (551), Expect = 6e-54
 Identities = 109/200 (54%), Positives = 141/200 (70%)
 Frame = -2

Query: 605 ASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMT 426
           AS L+F+QFL H  AF N+IL L+QLN +VVI TG N+C +I+DS++ + +         
Sbjct: 29  ASSLSFSQFLSHVLAFLNAILTLNQLNQVVVIATGYNSCNYIFDSSSDLNQSFENGRMPV 88

Query: 425 PSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRIL 246
             + + Q LEEF+ KD +L K   E +             LCYIQRV RS   HP PRIL
Sbjct: 89  MCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALCYIQRVFRSGALHPHPRIL 148

Query: 245 CLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQ 66
           CLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFLQQAS+ITGG++ KPQ + 
Sbjct: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYMGAQNSAFLQQASYITGGVHHKPQHLD 208

Query: 65  GLFQFLAMVFATDLHSRRFL 6
           GLFQ+L  +FATDLHSR FL
Sbjct: 209 GLFQYLMTIFATDLHSRSFL 228


>gb|EOY16261.1| Basal transcription factor complex subunit-related isoform 1
           [Theobroma cacao]
          Length = 296

 Score =  216 bits (551), Expect = 6e-54
 Identities = 109/200 (54%), Positives = 141/200 (70%)
 Frame = -2

Query: 605 ASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMT 426
           AS L+F+QFL H  AF N+IL L+QLN +VVI TG N+C +I+DS++ + +         
Sbjct: 29  ASSLSFSQFLSHVLAFLNAILTLNQLNQVVVIATGYNSCNYIFDSSSDLNQSFENGRMPV 88

Query: 425 PSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRIL 246
             + + Q LEEF+ KD +L K   E +             LCYIQRV RS   HP PRIL
Sbjct: 89  MCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALCYIQRVFRSGALHPHPRIL 148

Query: 245 CLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQ 66
           CLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFLQQAS+ITGG++ KPQ + 
Sbjct: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYMGAQNSAFLQQASYITGGVHHKPQHLD 208

Query: 65  GLFQFLAMVFATDLHSRRFL 6
           GLFQ+L  +FATDLHSR FL
Sbjct: 209 GLFQYLMTIFATDLHSRSFL 228


>gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
          Length = 295

 Score =  213 bits (542), Expect = 6e-53
 Identities = 113/201 (56%), Positives = 135/201 (67%)
 Frame = -2

Query: 605 ASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMT 426
           +S L F+ FL H   F NSILLL+QLN +VVI TG N+C +IYDS+T   +         
Sbjct: 29  SSSLPFSVFLSHVLTFLNSILLLNQLNQVVVIATGYNSCSYIYDSSTSTNQGSDNGRMPA 88

Query: 425 PSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRIL 246
               + Q LEEFV +D +L K                   LCYIQRV RS   HPQPRIL
Sbjct: 89  RCVNLLQKLEEFVIEDEQLIKEGLREGIASSLLSGSLSMALCYIQRVFRSGPLHPQPRIL 148

Query: 245 CLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQ 66
           CLQGS DGP+Q+V +MNAIFSAQRS +PID+C +GS +SAFLQQAS+ITGG+YLKPQ   
Sbjct: 149 CLQGSSDGPEQYVAIMNAIFSAQRS-VPIDSCYMGSSNSAFLQQASYITGGVYLKPQQPN 207

Query: 65  GLFQFLAMVFATDLHSRRFLQ 3
           GLFQ+L+ VFATDLHSR FLQ
Sbjct: 208 GLFQYLSTVFATDLHSRAFLQ 228


>ref|XP_006472763.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X2 [Citrus sinensis]
          Length = 293

 Score =  211 bits (536), Expect = 3e-52
 Identities = 107/201 (53%), Positives = 140/201 (69%)
 Frame = -2

Query: 605 ASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMT 426
           +S L+F+QFL H  AFFN+IL L+QLN +VVI TG N+C+++YDS++   +  G     +
Sbjct: 29  SSSLSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS 88

Query: 425 PSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRIL 246
               + QNLEEF+ KD +L K   E +             LCYIQRV RS   HPQPR  
Sbjct: 89  LCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-- 146

Query: 245 CLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQ 66
              GSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFLQQAS+ITGG++ KPQ + 
Sbjct: 147 ---GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 203

Query: 65  GLFQFLAMVFATDLHSRRFLQ 3
           GLFQ+L  +F TDLHSR FLQ
Sbjct: 204 GLFQYLLTIFGTDLHSRNFLQ 224


>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           2 [Fragaria vesca subsp. vesca]
          Length = 298

 Score =  209 bits (533), Expect = 7e-52
 Identities = 108/201 (53%), Positives = 135/201 (67%)
 Frame = -2

Query: 605 ASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMT 426
           +S L F+++L H   F NSILLL+QLN +VVI TG ++C +IYDS +   +         
Sbjct: 29  SSSLPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYIYDSASAPGQGSDQGRMPA 88

Query: 425 PSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRIL 246
             + + + LEEFV KD +L K  +                LCYIQ+V RS   HP PRIL
Sbjct: 89  LCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALCYIQKVFRSGPQHPHPRIL 148

Query: 245 CLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQ 66
           CLQGS DGP+Q+V +MNAIFSAQRSM+PID+C +GS +SAFLQQAS+ITGG+YLKPQ   
Sbjct: 149 CLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFLQQASYITGGVYLKPQQPD 208

Query: 65  GLFQFLAMVFATDLHSRRFLQ 3
           GL Q+L  VFATDLHSR FLQ
Sbjct: 209 GLLQYLTTVFATDLHSRAFLQ 229


>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           1 [Fragaria vesca subsp. vesca]
          Length = 300

 Score =  209 bits (533), Expect = 7e-52
 Identities = 108/201 (53%), Positives = 135/201 (67%)
 Frame = -2

Query: 605 ASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMT 426
           +S L F+++L H   F NSILLL+QLN +VVI TG ++C +IYDS +   +         
Sbjct: 29  SSSLPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYIYDSASAPGQGSDQGRMPA 88

Query: 425 PSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRIL 246
             + + + LEEFV KD +L K  +                LCYIQ+V RS   HP PRIL
Sbjct: 89  LCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALCYIQKVFRSGPQHPHPRIL 148

Query: 245 CLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQ 66
           CLQGS DGP+Q+V +MNAIFSAQRSM+PID+C +GS +SAFLQQAS+ITGG+YLKPQ   
Sbjct: 149 CLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFLQQASYITGGVYLKPQQPD 208

Query: 65  GLFQFLAMVFATDLHSRRFLQ 3
           GL Q+L  VFATDLHSR FLQ
Sbjct: 209 GLLQYLTTVFATDLHSRAFLQ 229


>ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
           gi|41053068|dbj|BAD08012.1| putative TFIIH basal
           transcription factor complex p34 subunit [Oryza sativa
           Japonica Group] gi|113535279|dbj|BAF07662.1|
           Os02g0125800 [Oryza sativa Japonica Group]
           gi|215768495|dbj|BAH00724.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 289

 Score =  207 bits (527), Expect = 4e-51
 Identities = 107/200 (53%), Positives = 136/200 (68%), Gaps = 2/200 (1%)
 Frame = -2

Query: 596 LTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTPST 417
           L FA F  H   + NS+LLL+ LNH+VVI  G+++C +I+DS+       G  +      
Sbjct: 30  LPFADFFAHLIHYVNSLLLLNHLNHVVVIAAGLSSCTYIFDSSDA--SASGAADVAATFA 87

Query: 416 LISQNLEEFVKKDHELYKNNTETK--NMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRILC 243
             S+ ++EF+ +D     +N      N            LCYIQRV RS   HPQPRILC
Sbjct: 88  KASRKMDEFIAEDARATSSNGSVADGNAASLLSGALSLALCYIQRVFRSGTRHPQPRILC 147

Query: 242 LQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQG 63
           LQGSPDGP+Q+V VMN+IFSAQRSM+PID+CIVG++ SAFLQQAS+ITGG+YLKPQ + G
Sbjct: 148 LQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNG 207

Query: 62  LFQFLAMVFATDLHSRRFLQ 3
           LFQ+LA VFATDLHSR FL+
Sbjct: 208 LFQYLAAVFATDLHSRTFLR 227


>ref|XP_004500559.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X2 [Cicer arietinum]
          Length = 294

 Score =  205 bits (521), Expect = 2e-50
 Identities = 106/199 (53%), Positives = 131/199 (65%)
 Frame = -2

Query: 599 PLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTPS 420
           P  F++FL    AF NSILLL QLN LVVI TG N+C +IYDST+               
Sbjct: 31  PFHFSEFLSQVLAFLNSILLLGQLNQLVVIATGCNSCGYIYDSTSNRNHASTNGTMPALY 90

Query: 419 TLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRILCL 240
           + +  NLEEF+ +D +L   +                 LCYIQR  RS   HPQPRILCL
Sbjct: 91  SNLLHNLEEFLARDQKLTMPHAPVTVPSSLLSGSLSMALCYIQRAFRSGPMHPQPRILCL 150

Query: 239 QGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQGL 60
           QGS DGP+Q+V +MNAIFSAQRS +P+D+C +GS +SAFLQQAS+ITGGIY +P  + GL
Sbjct: 151 QGSTDGPEQYVAIMNAIFSAQRSSVPVDSCYIGSNNSAFLQQASYITGGIYYRPPQMDGL 210

Query: 59  FQFLAMVFATDLHSRRFLQ 3
           FQ+L+ VFATDLHSR FL+
Sbjct: 211 FQYLSTVFATDLHSRAFLR 229


>ref|XP_004500558.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Cicer arietinum]
          Length = 315

 Score =  205 bits (521), Expect = 2e-50
 Identities = 106/199 (53%), Positives = 131/199 (65%)
 Frame = -2

Query: 599 PLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTPS 420
           P  F++FL    AF NSILLL QLN LVVI TG N+C +IYDST+               
Sbjct: 31  PFHFSEFLSQVLAFLNSILLLGQLNQLVVIATGCNSCGYIYDSTSNRNHASTNGTMPALY 90

Query: 419 TLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRILCL 240
           + +  NLEEF+ +D +L   +                 LCYIQR  RS   HPQPRILCL
Sbjct: 91  SNLLHNLEEFLARDQKLTMPHAPVTVPSSLLSGSLSMALCYIQRAFRSGPMHPQPRILCL 150

Query: 239 QGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQGL 60
           QGS DGP+Q+V +MNAIFSAQRS +P+D+C +GS +SAFLQQAS+ITGGIY +P  + GL
Sbjct: 151 QGSTDGPEQYVAIMNAIFSAQRSSVPVDSCYIGSNNSAFLQQASYITGGIYYRPPQMDGL 210

Query: 59  FQFLAMVFATDLHSRRFLQ 3
           FQ+L+ VFATDLHSR FL+
Sbjct: 211 FQYLSTVFATDLHSRAFLR 229


>ref|XP_003601046.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355490094|gb|AES71297.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 340

 Score =  204 bits (519), Expect = 3e-50
 Identities = 105/203 (51%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
 Frame = -2

Query: 599 PLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDSTTKVKELKGFNEFMTPS 420
           P  F++FL    AF NSILLL QLN +VVI TG N+C ++YDS +               
Sbjct: 32  PFHFSEFLSQVLAFLNSILLLGQLNQVVVIATGCNSCSYVYDSASDKNHASTNGTMPAIY 91

Query: 419 TLISQNLEEFVKKDHEL----YKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPR 252
           + +  NL+EFV KD +L    +K  T   ++            CYIQR  RS   HPQPR
Sbjct: 92  SNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLLSGALSMAL---CYIQRAFRSGPMHPQPR 148

Query: 251 ILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQF 72
           ILCLQGS DGP+Q+V +MNAIFSAQRS++P+D+C +GS +SAFLQQAS+ITGGIY +P  
Sbjct: 149 ILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCFIGSNNSAFLQQASYITGGIYYRPPQ 208

Query: 71  VQGLFQFLAMVFATDLHSRRFLQ 3
           ++GLFQ+L+ VFATDLHSR FL+
Sbjct: 209 MEGLFQYLSTVFATDLHSREFLR 231


>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
           gi|482574167|gb|EOA38354.1| hypothetical protein
           CARUB_v10009867mg [Capsella rubella]
          Length = 301

 Score =  202 bits (515), Expect = 9e-50
 Identities = 108/203 (53%), Positives = 144/203 (70%), Gaps = 5/203 (2%)
 Frame = -2

Query: 596 LTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFIYDS--TTKVKELKGFNEFMTP 423
           +TF+QFL H  AF N++L L+QLN +VVI TG ++CE+IYDS  T+     +     M P
Sbjct: 32  ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCEYIYDSSLTSNHGSFERDRTGMPP 91

Query: 422 --STLISQNLEEFVKKDHELYKNN-TETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPR 252
             ++L+++ LE+FV KD EL +    E +             LCYIQRV RS + HPQPR
Sbjct: 92  LFASLLNK-LEDFVTKDEELSREEGNEDRTPSCLLSGSLSMALCYIQRVFRSGHLHPQPR 150

Query: 251 ILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQF 72
           ILCLQGSPDGP+Q+V VMN+IFSAQR M+PID+C +G ++SAFLQQAS+ITGG++  P+ 
Sbjct: 151 ILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQ 210

Query: 71  VQGLFQFLAMVFATDLHSRRFLQ 3
           + GLFQ+L  +FATDLHSR F+Q
Sbjct: 211 LDGLFQYLTTIFATDLHSRGFVQ 233