BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00015346
         (528 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   103   2e-20
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   100   3e-19
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   100   3e-19
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   100   3e-19
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   100   3e-19
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...    99   5e-19
ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citr...    98   1e-18
ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citr...    98   1e-18
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...    98   1e-18
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...    97   2e-18
gb|EPS74339.1| hypothetical protein M569_00411 [Genlisea aurea]        97   2e-18
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...    96   4e-18
gb|AFK43257.1| unknown [Lotus japonicus]                               96   4e-18
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...    96   5e-18
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...    96   5e-18
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g...    95   9e-18
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...    95   9e-18
gb|AAL79727.1|AC091774_18 putative ribosomal large subunit pseud...    95   9e-18
gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus...    95   1e-17
gb|EOY15126.1| Pseudouridine synthase family protein isoform 2, ...    93   3e-17

>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
           gi|548833830|gb|ERM96267.1| hypothetical protein
           AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  103 bits (258), Expect = 2e-20
 Identities = 48/96 (50%), Positives = 64/96 (66%)
 Frame = +1

Query: 241 FNDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 420
           F   V  G+ K+R+D+WLS+R+  +SRARIQSS+RQG V VNG  I K SHI++ GD++ 
Sbjct: 72  FESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKVGDMVD 131

Query: 421 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
           C ++ L PL+AEPE+M L            NKPAHM
Sbjct: 132 CTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHM 167


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
           lycopersicum]
          Length = 436

 Score =  100 bits (248), Expect = 3e-19
 Identities = 48/94 (51%), Positives = 63/94 (67%)
 Frame = +1

Query: 247 DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 426
           + V   T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG   +K SH+++ GD + C 
Sbjct: 62  ETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCT 121

Query: 427 IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
           IA L PLRAEPE++ L            NKPAHM
Sbjct: 122 IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHM 155


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
           chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  100 bits (248), Expect = 3e-19
 Identities = 48/86 (55%), Positives = 61/86 (70%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLD+W+S R+ GISRAR+QSS+R GLV VNG  I+K SH ++AGD+I+C I+ L PLR
Sbjct: 76  KVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLR 135

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AEPE++ L            NKPAHM
Sbjct: 136 AEPEDIDLDIVYEDEHVLVVNKPAHM 161


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
           sativus]
          Length = 453

 Score =  100 bits (248), Expect = 3e-19
 Identities = 48/86 (55%), Positives = 61/86 (70%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLD+W+S R+ GISRAR+QSS+R GLV VNG  I+K SH ++AGD+I+C I+ L PLR
Sbjct: 76  KVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLR 135

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AEPE++ L            NKPAHM
Sbjct: 136 AEPEDIDLDIVYEDEHVLVVNKPAHM 161


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 49/92 (53%), Positives = 63/92 (68%)
 Frame = +1

Query: 253 VGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIA 432
           V   + K RLD+W+SSR+ GISRAR+QSS+R GLV VN   ++K SH+IRAGD ++C I+
Sbjct: 70  VNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTIS 129

Query: 433 PLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
            L PLRAEPE++ L            NKPAHM
Sbjct: 130 ELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHM 161


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Solanum tuberosum]
          Length = 431

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 47/88 (53%), Positives = 61/88 (69%)
 Frame = +1

Query: 265 TPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVP 444
           T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG   +K SH+++ GD + C IA L P
Sbjct: 68  TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKP 127

Query: 445 LRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
           LRAEPE++ L            NKPAHM
Sbjct: 128 LRAEPEDIPLDIVFEDEHVLVVNKPAHM 155


>ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
           gi|557537377|gb|ESR48495.1| hypothetical protein
           CICLE_v10001736mg [Citrus clementina]
          Length = 341

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 46/86 (53%), Positives = 61/86 (70%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLDAW+SSR++GISRAR+QSS+R GLV VNG  ++K SH ++ GD+++C I+ L PLR
Sbjct: 70  KLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVKGGDMVNCTISELQPLR 129

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AE E++ L            NKPAHM
Sbjct: 130 AEAEDIPLDIVYEDDNVLVVNKPAHM 155


>ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
           gi|557537376|gb|ESR48494.1| hypothetical protein
           CICLE_v10001736mg [Citrus clementina]
          Length = 324

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 46/86 (53%), Positives = 61/86 (70%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLDAW+SSR++GISRAR+QSS+R GLV VNG  ++K SH ++ GD+++C I+ L PLR
Sbjct: 70  KLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVKGGDMVNCTISELQPLR 129

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AE E++ L            NKPAHM
Sbjct: 130 AEAEDIPLDIVYEDDNVLVVNKPAHM 155


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
           gi|222843675|gb|EEE81222.1| pseudouridine synthase
           family protein [Populus trichocarpa]
          Length = 444

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 48/94 (51%), Positives = 63/94 (67%)
 Frame = +1

Query: 247 DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 426
           + V   + K RLD+W+SSR+ GISRAR+QSS++ GLV VNG  I+K SH ++AGD ++C 
Sbjct: 85  ESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCV 144

Query: 427 IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
           I+ L PLRAEPE + L            NKPAHM
Sbjct: 145 ISELQPLRAEPENIPLDIVYEDENVLVVNKPAHM 178


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
           sinensis]
          Length = 421

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 45/86 (52%), Positives = 61/86 (70%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLDAW+SSR++GISRAR+QSS+R GLV +NG  ++K SH ++ GD+++C I+ L PLR
Sbjct: 70  KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AE E++ L            NKPAHM
Sbjct: 130 AEAEDIPLDIVYEDDNVLVVNKPAHM 155


>gb|EPS74339.1| hypothetical protein M569_00411 [Genlisea aurea]
          Length = 1063

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 44/86 (51%), Positives = 61/86 (70%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLD+W+SSR+ GISRAR+QSS+R G V VNG+ +NK S+++R GD+++C++  L PLR
Sbjct: 76  KVRLDSWISSRIGGISRARVQSSIRSGFVSVNGSVVNKVSYLVRHGDVVNCSVPELRPLR 135

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AEPE++ L            NKP HM
Sbjct: 136 AEPEDIPLDIVHEDEHILVLNKPPHM 161


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
           gi|557086678|gb|ESQ27530.1| hypothetical protein
           EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 45/86 (52%), Positives = 61/86 (70%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLD+W+SSR+ G+SRAR+QSS+R GLV VNG  ++K SH ++AGD ++C I+ L PL+
Sbjct: 82  KIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVVDKVSHNVKAGDEVNCTISELQPLK 141

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AEPE++ L            NKPAHM
Sbjct: 142 AEPEDIPLDIVYEDKHLLVVNKPAHM 167


>gb|AFK43257.1| unknown [Lotus japonicus]
          Length = 209

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 47/95 (49%), Positives = 64/95 (67%)
 Frame = +1

Query: 244 NDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISC 423
           ++++G G P  RLD+W+S+R+ GISRAR+QSS++ GLVHVNG  +NK S  +++GD I C
Sbjct: 74  DNRIGSGKP--RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131

Query: 424 NIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
            IA L  LRA PE++ L            NKPAHM
Sbjct: 132 TIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHM 166


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
           brachyantha]
          Length = 442

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
 Frame = +1

Query: 247 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 420
           + V  G  + R+DAW+SSR+ G  +SRAR+Q+S+R GLV VNG  ++K SH+++ GD++S
Sbjct: 61  EAVPAGEGRSRIDAWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKGGDMVS 120

Query: 421 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
           C ++ L PLRAEPE++ L            NKPAHM
Sbjct: 121 CTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHM 156


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 46/96 (47%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
 Frame = +1

Query: 247 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 420
           + V  G  + R+DAW+S+R+ G  +SRARIQ+S+R GLV VNG  ++K SH+++ GDI+S
Sbjct: 63  EAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVS 122

Query: 421 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
           C ++ L PLRAEPE++ L            NKPAHM
Sbjct: 123 CTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHM 158


>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
           gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
           pseudouridine synthase 2, chloroplastic; AltName:
           Full=RNA pseudouridylate synthase 2; AltName:
           Full=RNA-uridine isomerase 2; Flags: Precursor
           gi|53791796|dbj|BAD53590.1| ribosomal large subunit
           pseudouridine synthase-like [Oryza sativa Japonica
           Group] gi|54291043|dbj|BAD61720.1| ribosomal large
           subunit pseudouridine synthase-like [Oryza sativa
           Japonica Group] gi|113596634|dbj|BAF20508.1|
           Os06g0717400 [Oryza sativa Japonica Group]
           gi|215706335|dbj|BAG93191.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222636236|gb|EEE66368.1| hypothetical protein
           OsJ_22675 [Oryza sativa Japonica Group]
          Length = 445

 Score = 95.1 bits (235), Expect = 9e-18
 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
 Frame = +1

Query: 247 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 420
           + V  G  + R+DAW+S+R+ G  +SRARIQ+S+R GLV VNG  ++K SH+++ GDI+S
Sbjct: 63  EAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVS 122

Query: 421 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
           C +  L PLRAEPE++ L            NKPAHM
Sbjct: 123 CTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHM 158


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score = 95.1 bits (235), Expect = 9e-18
 Identities = 45/86 (52%), Positives = 59/86 (68%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLD+W+SSR+ GISRAR+QSS++ GLV VNG  ++K SH ++ GD ++C I+ L PLR
Sbjct: 71  KLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSHNVKFGDKVTCTISELQPLR 130

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AEPE+M L            NKP HM
Sbjct: 131 AEPEDMPLDIVYEDEHLLVVNKPPHM 156


>gb|AAL79727.1|AC091774_18 putative ribosomal large subunit pseudouridine synthase [Oryza
           sativa Japonica Group]
          Length = 275

 Score = 95.1 bits (235), Expect = 9e-18
 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
 Frame = +1

Query: 247 DKVGEGTPKQRLDAWLSSRMEG--ISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 420
           + V  G  + R+DAW+S+R+ G  +SRARIQ+S+R GLV VNG  ++K SH+++ GDI+S
Sbjct: 63  EAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVS 122

Query: 421 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
           C +  L PLRAEPE++ L            NKPAHM
Sbjct: 123 CTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHM 158


>gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 47/89 (52%), Positives = 59/89 (66%)
 Frame = +1

Query: 262 GTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLV 441
           G+ K RLD+W+SSR+ GISRAR+QSS++ GLVHVNG  ++K S  ++AGD I C IA L 
Sbjct: 77  GSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQ 136

Query: 442 PLRAEPEEMQLXXXXXXXXXXXXNKPAHM 528
            LRA PE + L            NKPAHM
Sbjct: 137 KLRAVPENIPLDIVYEDEHVLVINKPAHM 165


>gb|EOY15126.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
           cacao]
          Length = 409

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 45/86 (52%), Positives = 60/86 (69%)
 Frame = +1

Query: 271 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 450
           K RLD+W+SSR++GISRAR+QSS++ GLV VNG  ++K SH +R GD ++C I+ L PLR
Sbjct: 66  KLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDKVNCVISELQPLR 125

Query: 451 AEPEEMQLXXXXXXXXXXXXNKPAHM 528
           AEPE++ L            NKP HM
Sbjct: 126 AEPEDIPLDIVYEDDHVLVVNKPPHM 151