BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00015309
         (783 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A...   117   4e-24
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis...   105   1e-20
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   103   7e-20
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   100   6e-19
gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus...   100   1e-18
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   100   1e-18
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   100   1e-18
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li...    98   3e-18
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro...    96   2e-17
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...    96   2e-17
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]               92   2e-16
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe...    92   2e-16
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...    92   3e-16
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]        91   6e-16
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]               90   8e-16
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu...    90   8e-16
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li...    89   2e-15
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li...    89   2e-15
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su...    83   1e-13
ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutr...    82   3e-13

>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
           gi|548839203|gb|ERM99496.1| hypothetical protein
           AMTR_s00088p00026960 [Amborella trichopoda]
          Length = 1107

 Score =  117 bits (293), Expect = 4e-24
 Identities = 69/183 (37%), Positives = 105/183 (57%), Gaps = 3/183 (1%)
 Frame = +1

Query: 211 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 390
           STV +  +P + +A EL++FL+S +G  S+F+C I TER NWKS G   VQF+    A K
Sbjct: 4   STVKVSTIPLSALAEELLQFLESHIGPRSIFACTIVTERRNWKSKGFGRVQFETCNDAKK 63

Query: 391 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLWSAK 561
             + S +G L+ +G HL + L  +D + RPC     V+GG L  G +V E ++SV+ S  
Sbjct: 64  ANDLSLEGKLVFQGNHLSLTLGCEDIVPRPCRVENRVNGGFLKVGCLVYEDSMSVIGSWN 123

Query: 562 DCNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARIF 741
              AE   + +++ FYV    E +K+E R +DI  T+      T+   ILL+++   RI+
Sbjct: 124 LVKAELMPERKRVDFYVSERGELFKLETRFEDIVETFGCQIGGTNFDAILLQIKYAPRIY 183

Query: 742 QKV 750
            KV
Sbjct: 184 CKV 186


>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
           gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
           2 [Cucumis sativus]
          Length = 1117

 Score =  105 bits (263), Expect = 1e-20
 Identities = 64/184 (34%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
 Frame = +1

Query: 211 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 390
           ST+ + N+P + +A +L+ FL+S LG  SVF+ +I TER NWKS GS  VQF       K
Sbjct: 7   STLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAK 66

Query: 391 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVS---GGVLSAGNMVSESALSVLWSAK 561
             + S +  L+    +L   L + D + RP ++ +    GVL  G M+ E  +SVL S +
Sbjct: 67  AMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWE 126

Query: 562 DCNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARIF 741
              A    + ++I F++ H +E YK+E+  ++I  T  +   E     +LLKL+   RI+
Sbjct: 127 GVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIY 186

Query: 742 QKVS 753
           +K+S
Sbjct: 187 KKIS 190


>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1120

 Score =  103 bits (257), Expect = 7e-20
 Identities = 59/182 (32%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 205 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 384
           +S TV + N+P++  A +L++FL+S LG  +VF+ +I ++  NWKS G   VQF+     
Sbjct: 8   LSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 67

Query: 385 TKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVSGGVLSAGNMVSESALSVLWSAKD 564
           ++  + S    L+   + L +   D D I RP + +  GVL AG M+S+  +SVL S + 
Sbjct: 68  SRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGVLYAGFMLSDHRMSVLESWEG 127

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAY-INEETDTPCILLKLQTGARIF 741
                  Q +++ F+V H  + Y++E   +DI  ++ Y + E+     +LLK++ G RI+
Sbjct: 128 IAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIY 187

Query: 742 QK 747
           +K
Sbjct: 188 KK 189


>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
          Length = 1119

 Score =  100 bits (249), Expect = 6e-19
 Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 4/189 (2%)
 Frame = +1

Query: 199 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 378
           +R ++TV + N+P++ +A +L +F DS++G+GSVF+C I +E  NWKS G   VQF+   
Sbjct: 5   KRATATVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQ 64

Query: 379 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVL 549
                 + S +G L+ +G+ L +     D I RP         G+L  G +V    + VL
Sbjct: 65  DKLHCLSLSEQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVL 124

Query: 550 WSAKDCNAEFSFQGQKISFYVGHGREEYKIELRLDD-ISATYAYINEETDTPCILLKLQT 726
            + +D       + + + F+V H  E Y++E++  D + AT   +  E     +LLKL+ 
Sbjct: 125 ETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSL--ENQKSALLLKLKH 182

Query: 727 GARIFQKVS 753
             +++Q+VS
Sbjct: 183 APKLYQRVS 191


>gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
          Length = 1119

 Score = 99.8 bits (247), Expect = 1e-18
 Identities = 59/182 (32%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 205 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 384
           +S TV + N+PR+  A +L+ F++S +G  +VF+ +I ++  NWKS G+  VQF+     
Sbjct: 8   LSHTVSVFNIPRSATAKDLLHFIESKVGSSTVFALEIFSDNVNWKSRGAGRVQFEALDAK 67

Query: 385 TKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVSGGVLSAGNMVSESALSVLWSAKD 564
           ++  + S    L+I  + L +    +D I RP + +  GVL AG M+S+  +SVL S + 
Sbjct: 68  SRALSLSQLQQLLIHSHFLRLSDTSEDIIFRPLHRLQNGVLYAGLMLSDDRMSVLESWEG 127

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAY-INEETDTPCILLKLQTGARIF 741
                  Q +K+ F V H  + Y++E+  +DI  ++ Y +  E     +LLKL+ G +I+
Sbjct: 128 VAGLVVPQRRKLDFLVLHDGDCYRVEIFFEDILESHGYCLGAEGKLNALLLKLKFGPKIY 187

Query: 742 QK 747
           +K
Sbjct: 188 KK 189


>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum
           lycopersicum]
          Length = 1119

 Score = 99.8 bits (247), Expect = 1e-18
 Identities = 56/188 (29%), Positives = 101/188 (53%), Gaps = 3/188 (1%)
 Frame = +1

Query: 199 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 378
           +R ++TV + N+P++ +A +L  F DS++G+GSVF+C I +E  NWKS G   VQF+   
Sbjct: 5   KRATATVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQ 64

Query: 379 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVL 549
                 + + +G L+ +G+ L +     D I RP         G+L  G +V +  + VL
Sbjct: 65  DKLHCLSLAEQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVL 124

Query: 550 WSAKDCNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTG 729
            + +D       + + + F+V H  E Y++E++  D++      + E     +LLKL+  
Sbjct: 125 ETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTEG-TLCSVENQKSALLLKLKHA 183

Query: 730 ARIFQKVS 753
            +++Q+VS
Sbjct: 184 PKLYQRVS 191


>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score = 99.8 bits (247), Expect = 1e-18
 Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 4/189 (2%)
 Frame = +1

Query: 199 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 378
           +R+++TV + N+P+T +A +L +F +S +G+GSVF+C I +E  NWKS G   VQF+   
Sbjct: 5   KRVTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQ 64

Query: 379 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVL 549
              +  + S +G L+ +G+ L +     D I RP    Y    G+L  G ++    + VL
Sbjct: 65  SKLQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVL 124

Query: 550 WSAKDCNAEFSFQGQKISFYVGHGREE-YKIELRLDDISATYAYINEETDTPCILLKLQT 726
            + ++       + + + F+V H + E Y++E++  DI  T     E+  T  +LLKL+ 
Sbjct: 125 ETWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKT-ALLLKLKH 183

Query: 727 GARIFQKVS 753
             +++Q+VS
Sbjct: 184 APKLYQRVS 192


>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
           max]
          Length = 1121

 Score = 98.2 bits (243), Expect = 3e-18
 Identities = 56/182 (30%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 205 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 384
           +S+TV + N+P++  A +L++FL+S +G  +VF+ +I ++  NWKS G   VQF+     
Sbjct: 9   LSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 68

Query: 385 TKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVSGGVLSAGNMVSESALSVLWSAKD 564
           ++  + S    L+   + L +   D D I RP + +  GVL AG ++S+  +SVL S + 
Sbjct: 69  SRALSLSQLNHLLFHRHFLRLSETDADIIFRPQHRLHNGVLYAGFVLSDHRMSVLESWEG 128

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAY-INEETDTPCILLKLQTGARIF 741
                    +++ F+V H  + Y++E   +DI  ++ Y + E+     +LLK++ G RI+
Sbjct: 129 VAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDAKLNALLLKMKFGPRIY 188

Query: 742 QK 747
           +K
Sbjct: 189 KK 190


>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
           gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
           2 isoform 1 [Theobroma cacao]
          Length = 1149

 Score = 95.5 bits (236), Expect = 2e-17
 Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 3/187 (1%)
 Frame = +1

Query: 202 RMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGL 381
           R   T+ + N+P+T +A +L+EFL+  LG  +VF+ +I T+R NWKS G   VQF     
Sbjct: 11  RERPTLRVTNVPQTAIAKDLLEFLEYKLGTDTVFAIEISTDRNNWKSRGFGRVQFATLEA 70

Query: 382 ATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLW 552
            +K    S +  L+ + + L +     D I RP    + + GGVL  G MV +  L VL 
Sbjct: 71  KSKAHLLSLRNDLVFKSHSLKLSETYDDIIPRPIRADHRLDGGVLHVGFMVQDDYLRVLE 130

Query: 553 SAKDCNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGA 732
             +D       + +++ F++ +  E YK+E+  DD+  T       +    +LL+++   
Sbjct: 131 RWEDVRGWLMPERRRLEFWLWNNGECYKLEVLFDDVLETVGCCFNGSSCNALLLRVKYAP 190

Query: 733 RIFQKVS 753
           RI+QKVS
Sbjct: 191 RIYQKVS 197


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
           gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
           [Medicago truncatula]
          Length = 1308

 Score = 95.5 bits (236), Expect = 2e-17
 Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 4/184 (2%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 393
           TV + N+P T  A++L+ +L++ +G  SVF+ +I ++ TNWKS G   VQF+     +K 
Sbjct: 10  TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKA 69

Query: 394 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPCY---SVSGGVLSAGNMVSESALSVLWSAKD 564
              +    L++  + L +     D I RP      ++ G L AG  +    +SVL S + 
Sbjct: 70  LTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEG 129

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTP-CILLKLQTGARIF 741
                  + Q++ F+V HG + +K+E+  ++I     Y ++E   P  +LLKL+ G RI+
Sbjct: 130 VRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIY 189

Query: 742 QKVS 753
           QK++
Sbjct: 190 QKMA 193


>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score = 92.4 bits (228), Expect = 2e-16
 Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 3/183 (1%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 393
           T+ + ++P+T VA +L++F +S LG  SVF+ +I T+R NWKS G   VQF  P   +  
Sbjct: 10  TLRLTHIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAKSDA 69

Query: 394 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLWSAKD 564
              S    L+ + + L +     D I RP    + + GGVL AG M S+  L VL   + 
Sbjct: 70  LRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLERWEG 129

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARIFQ 744
                  + +++ F+V    E YK++   DDI  T     + +    +LL+++   RI+Q
Sbjct: 130 VRGWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGSACNALLLRVRYAPRIYQ 189

Query: 745 KVS 753
           KVS
Sbjct: 190 KVS 192


>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
          Length = 1118

 Score = 92.0 bits (227), Expect = 2e-16
 Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 3/183 (1%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 393
           TV + N+P+TV A EL+ FL S LG  SVF+ +I ++  NWKS G   VQF      ++ 
Sbjct: 8   TVRVSNIPQTVTAKELLSFLQSKLGTDSVFAVEIISDHKNWKSRGFGRVQFTTLEAKSEA 67

Query: 394 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLWSAKD 564
            + S + GL+ +   L +     D I RP      ++G VL AG MV    +S+L S + 
Sbjct: 68  YSLSLQNGLVFKSESLRLSETYDDIIQRPVDPKRRLNGTVLHAGFMVKGDCMSMLESWEG 127

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARIFQ 744
             A    + +++ F+V    E YK+E+  ++I  ++           +LLKL+ G RIF+
Sbjct: 128 VRAWVMPERKRVEFWVWLRDECYKLEIAFENIMESFGCRLGGEKVNALLLKLKFGPRIFR 187

Query: 745 KVS 753
           K+S
Sbjct: 188 KIS 190


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
           gi|297733815|emb|CBI15062.3| unnamed protein product
           [Vitis vinifera]
          Length = 1127

 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 6/193 (3%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 393
           TV + N+P+T +A EL  FL+S LG  ++++ +I TE  NWKS G   VQF+        
Sbjct: 8   TVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAA 67

Query: 394 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLWSAKD 564
              S +G L+  G  L +     D I RP      V  GVL  G +V +  + VL S + 
Sbjct: 68  DLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEG 127

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARIFQ 744
                  +  ++ F+V    E YK+E+  DD+  + A          +LLKL+   +IFQ
Sbjct: 128 VKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIFQ 187

Query: 745 KV---SLRESFSA 774
           K    ++   FSA
Sbjct: 188 KFAGPNIASKFSA 200


>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
          Length = 1115

 Score = 90.5 bits (223), Expect = 6e-16
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 5/192 (2%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 393
           TV + N+P+T +A +L  FL+S LG  SVF+ +I TER NWKS G   VQF +  LA K+
Sbjct: 9   TVRVTNIPQTAIATDLQTFLESKLGPNSVFAVEISTERKNWKSRGFGRVQFTS--LAAKL 66

Query: 394 CNR--STKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLWSA 558
             +  S     +    +L +     D +  P      +  GVL AG M+ +  ++VL S 
Sbjct: 67  VAQALSLSNNFVFRSRNLGIFDTHDDIVALPVDPKLRLEDGVLHAGFMIRDDRMAVLQSW 126

Query: 559 KDCNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARI 738
           +   A    +  ++ F+V    + YK+E+  +D+  T  Y  ++      LL+L+ G +I
Sbjct: 127 EGVRAWAMPERNRVEFWVWSDEDCYKLEVAFEDVLETVGYCLDDGKLYAFLLQLKYGPKI 186

Query: 739 FQKVSLRESFSA 774
           ++++S    F A
Sbjct: 187 YKRISRPSKFVA 198


>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score = 90.1 bits (222), Expect = 8e-16
 Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 3/183 (1%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 393
           T+ + N+P+T VA +L++F +S LG  SVF+ +I T+R NWKS G   VQF  P   +  
Sbjct: 10  TLRLTNIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAMSDA 69

Query: 394 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLWSAKD 564
              S    L+ + + L +     D I RP    + + GGVL AG M S+  L VL   + 
Sbjct: 70  LRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLERWEG 129

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARIFQ 744
                  + +++ F+V    E YK++   DD+  T     + +    +LL+++   R ++
Sbjct: 130 VRGWIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGSACNALLLRVRYAPRTYR 189

Query: 745 KVS 753
           KVS
Sbjct: 190 KVS 192


>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
           gi|222868578|gb|EEF05709.1| hypothetical protein
           POPTR_0015s08500g [Populus trichocarpa]
          Length = 1110

 Score = 90.1 bits (222), Expect = 8e-16
 Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 4/184 (2%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 393
           +V + N+P+T+ A E++++L + LG+ SVF+ +I T R NW S G   VQF +  +  + 
Sbjct: 9   SVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEA 68

Query: 394 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSAGNMVSESALSVLWSAKD 564
            + S K  L+++  +L +     D I RP      +  GVL  G M  E+ L VL   + 
Sbjct: 69  LSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEG 128

Query: 565 CNAEFSFQGQKISFYVGHGRE-EYKIELRLDDISATYAYINEETDTPCILLKLQTGARIF 741
               F  + ++I F++  G+E  YK+ +  +DI     Y  +      ++LKL+ G RI+
Sbjct: 129 VRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIY 188

Query: 742 QKVS 753
           QK+S
Sbjct: 189 QKIS 192


>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
          Length = 1131

 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 21/202 (10%)
 Frame = +1

Query: 211 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 390
           +TV + N+P+T +A +L+ FL+S LG+ SVF+ +I T+R+NWKS G   VQF +    +K
Sbjct: 4   ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63

Query: 391 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLWSAK 561
             N S    L+    +L +     D + RP    + V  GVL  G M  E  L VL + +
Sbjct: 64  AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123

Query: 562 DCNAEFSFQGQKISFYV--------GHGREE---------YKIELRLDDISATYAY-INE 687
                     +++ F+V          G +E         +K+E+  +D+  T  + ++E
Sbjct: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183

Query: 688 ETDTPCILLKLQTGARIFQKVS 753
                 IL KL+ G +I+QKVS
Sbjct: 184 GATVNGILFKLKYGPKIYQKVS 205


>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
          Length = 1122

 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 3/182 (1%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 393
           TV + N+P++  A +L+ FL+S +G  SVF+ +I ++ +NWKS GS  VQF+     +K 
Sbjct: 10  TVRVFNIPQSATAKDLLHFLESTVGPSSVFALEIFSDHSNWKSRGSGRVQFETFEAKSKA 69

Query: 394 CNRSTKGGLIIEGYHLDVKLRDKDHIHR---PCYSVSGGVLSAGNMVSESALSVLWSAKD 564
            + S+   L+   + L +     D + R   PC  +  G L AG  +    +SV+ S + 
Sbjct: 70  LSLSSNDKLLFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWEG 129

Query: 565 CNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARIFQ 744
                  +  ++ F+V H  + +K+E+  ++I     + ++ +    +LLKL+ G RI+Q
Sbjct: 130 VKGWVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIYQ 189

Query: 745 KV 750
           ++
Sbjct: 190 RM 191


>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 51/192 (26%), Positives = 100/192 (52%), Gaps = 4/192 (2%)
 Frame = +1

Query: 214 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGLATK 390
           T+ +   P TV A  + + L+ I+G G+VF+ +++  +  +  S    IVQF +   A+ 
Sbjct: 5   TLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHASL 64

Query: 391 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSVLWSAK 561
           + N + +  L    ++L  +  ++D + RP    +++ G  L  G ++ E  LSVLWS  
Sbjct: 65  VLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWSGT 124

Query: 562 DCNAEFSFQGQKISFYVGHGREEYKIELRLDDISATYAYINEETDTPCILLKLQTGARIF 741
           D + EF F  ++I F + +  ++YK+EL  + I     +         +L+++Q   +I+
Sbjct: 125 DVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAPKIY 184

Query: 742 QKVSLRESFSAY 777
           ++ ++R S S Y
Sbjct: 185 EQ-NIRLSGSMY 195


>ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutrema salsugineum]
           gi|557097970|gb|ESQ38406.1| hypothetical protein
           EUTSA_v10028370mg [Eutrema salsugineum]
          Length = 1124

 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 5/186 (2%)
 Frame = +1

Query: 211 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 390
           STV I N+P+T+VA EL+ FL+  LGE +VF+ +I T R NWK      VQF +  + ++
Sbjct: 8   STVKITNVPQTIVADELLRFLELHLGEDTVFALEIPTSRENWKPRDFARVQFTSLEVKSR 67

Query: 391 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSAG-NMVSESALSVLWSA 558
               S++  L+ +  +L +     D I RP      + G VL+ G     E     L   
Sbjct: 68  AHLLSSQSKLLFKSRNLRISEAYDDIIPRPVDPRKMLDGVVLTVGFPEADEGRFCALEKW 127

Query: 559 KDCNAEFSFQGQKISFYVGHGREEYKIELRLDDISATY-AYINEETDTPCILLKLQTGAR 735
           +        + +++ F+V  G E YK+E+R +DI  T     N  ++     L+L+ G +
Sbjct: 128 EGVRCWVIEEKRRVEFWVCDGGECYKLEVRFEDIVETVGCCFNGASEINAFFLRLKYGPK 187

Query: 736 IFQKVS 753
           I++KVS
Sbjct: 188 IYKKVS 193