BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00014925
         (1172 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE76416.1| unknown [Picea sitchensis]                             419   e-114
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   341   3e-91
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...   341   3e-91
dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japo...   336   9e-90
gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indi...   336   9e-90
ref|XP_004965639.1| PREDICTED: uncharacterized protein LOC101778...   332   1e-88
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        330   5e-88
ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   330   9e-88
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   330   9e-88
gb|AFW76096.1| pseudouridylate synthase [Zea mays]                    329   1e-87
gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]     328   3e-87
gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]     327   4e-87
gb|AFK45334.1| unknown [Medicago truncatula]                          327   4e-87
gb|ACF83621.1| unknown [Zea mays]                                     327   4e-87
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   327   7e-87
ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622...   326   1e-86
ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citr...   326   1e-86
ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago trun...   326   1e-86
ref|XP_002331405.1| predicted protein [Populus trichocarpa]           323   8e-86
ref|XP_006283804.1| hypothetical protein CARUB_v10004903mg [Caps...   319   2e-84

>gb|ADE76416.1| unknown [Picea sitchensis]
          Length = 448

 Score =  419 bits (1076), Expect = e-114
 Identities = 213/365 (58%), Positives = 262/365 (71%), Gaps = 23/365 (6%)
 Frame = +1

Query: 100  SEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHLSLNDLVFH 279
            ++ D +  HVHYDHQD C++ RWTAKESY YLY+RPW+++ +FYSHL AG LSL+DLVFH
Sbjct: 26   TDVDNEKPHVHYDHQDDCREFRWTAKESYAYLYDRPWEEVMDFYSHLAAGRLSLSDLVFH 85

Query: 280  --RKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSYFDGWQKQP 453
              +K  V R  G                 KK +GGKW RRTFKI+LSYDG+ FDGWQKQP
Sbjct: 86   ESKKGNVARPYGNAAVPSCTGILLENNS-KKPKGGKWARRTFKIVLSYDGNLFDGWQKQP 144

Query: 454  GLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRK 633
            G+NTVQGL+EK+LGKFV  KK +ELEAK   +EAA++VAGRTDKGVSA  QVCSFYTWRK
Sbjct: 145  GMNTVQGLVEKSLGKFVDEKKAQELEAKKASVEAAVAVAGRTDKGVSAFQQVCSFYTWRK 204

Query: 634  DVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGEG------- 792
            D +  ++E+EIN  A   LKV S+ EV REFHPNFSAKWRRYLYILPL +GEG       
Sbjct: 205  DTSLEDIESEINAAALGKLKVVSISEVSREFHPNFSAKWRRYLYILPLKDGEGNKTVVDG 264

Query: 793  ------DGMC--------NSTKEILKMEKVSATAESECKQLNKPYNFDVALVNQFLQQLE 930
                  D +C        ++   ++ ME ++ +A  + +   KP+NF+V  VNQ LQQLE
Sbjct: 265  GSPVTYDSLCLADEGGNQSTDMNVINMEAMNISATGKHQASVKPHNFNVDTVNQLLQQLE 324

Query: 931  GRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANR 1110
            G+SLSY+IFARDTQASRS GPATEC ++HARAAVATLP +G+    + + VMCVELVANR
Sbjct: 325  GQSLSYRIFARDTQASRSRGPATECFMHHARAAVATLPYMGQDHTSKGRTVMCVELVANR 384

Query: 1111 FLRKL 1125
            FLRK+
Sbjct: 385  FLRKM 389


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  341 bits (875), Expect = 3e-91
 Identities = 182/373 (48%), Positives = 237/373 (63%), Gaps = 23/373 (6%)
 Frame = +1

Query: 76   KITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHL 255
            KI M      +DY    +HY+H D C+  RWTA+ESY+++Y RPW+++ +FYSH + G  
Sbjct: 20   KILMENRAQRKDY----LHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRF 75

Query: 256  SLNDLVFHRKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSYFD 435
            SL+ L+            TPL               KD+ G+W R TFKI+LSYDG+ FD
Sbjct: 76   SLSSLLGTEICRDHDDAETPLIYNSAELNRAAV---KDKTGRWARATFKIVLSYDGNSFD 132

Query: 436  GWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCS 615
            GWQKQPGLNTVQGL+E++LGKFV  KK + L+ K +P+E    VAGRTDKGV+AL QVCS
Sbjct: 133  GWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCS 192

Query: 616  FYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGD 795
            FYTWR DV   ++E  IN+ A   L+ +SV +V R FHPNFSAKWRRYLYILPL++GE  
Sbjct: 193  FYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENM 252

Query: 796  GMCNSTKE---------ILKMEK--------------VSATAESECKQLNKPYNFDVALV 906
               ++T E          +K+E               V +  + E    +KP  F +  V
Sbjct: 253  EPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDEELVSADKPQTFSITRV 312

Query: 907  NQFLQQLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVM 1086
            NQ L++LEG+ LSYK+FARDT+ASR+ GP TEC +YHARAA   LPC+ +  G   ++VM
Sbjct: 313  NQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVG---RSVM 369

Query: 1087 CVELVANRFLRKL 1125
            CVELVANRFLRK+
Sbjct: 370  CVELVANRFLRKM 382


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  341 bits (875), Expect = 3e-91
 Identities = 182/373 (48%), Positives = 237/373 (63%), Gaps = 23/373 (6%)
 Frame = +1

Query: 76   KITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHL 255
            KI M      +DY    +HY+H D C+  RWTA+ESY+++Y RPW+++ +FYSH + G  
Sbjct: 20   KILMENRAQRKDY----LHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRF 75

Query: 256  SLNDLVFHRKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSYFD 435
            SL+ L+            TPL               KD+ G+W R TFKI+LSYDG+ FD
Sbjct: 76   SLSSLLGTEICRDHDDAETPLIYNSAELNRAAV---KDKTGRWARATFKIVLSYDGNSFD 132

Query: 436  GWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCS 615
            GWQKQPGLNTVQGL+E++LGKFV  KK + L+ K +P+E    VAGRTDKGV+AL QVCS
Sbjct: 133  GWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCS 192

Query: 616  FYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGD 795
            FYTWR DV   ++E  IN+ A   L+ +SV +V R FHPNFSAKWRRYLYILPL++GE  
Sbjct: 193  FYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENM 252

Query: 796  GMCNSTKE---------ILKMEK--------------VSATAESECKQLNKPYNFDVALV 906
               ++T E          +K+E               V +  + E    +KP  F +  V
Sbjct: 253  EPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKPQTFSITRV 312

Query: 907  NQFLQQLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVM 1086
            NQ L++LEG+ LSYK+FARDT+ASR+ GP TEC +YHARAA   LPC+ +  G   ++VM
Sbjct: 313  NQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVG---RSVM 369

Query: 1087 CVELVANRFLRKL 1125
            CVELVANRFLRK+
Sbjct: 370  CVELVANRFLRKM 382


>dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group]
          Length = 495

 Score =  336 bits (862), Expect = 9e-90
 Identities = 182/353 (51%), Positives = 229/353 (64%), Gaps = 4/353 (1%)
 Frame = +1

Query: 79   ITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLL---AG 249
            ++  T  +E D   +H HY+H D C  LRWTAKESYEY+Y RPW  + +FY+ L+   AG
Sbjct: 18   LSFSTAAAEGD---EHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAG 74

Query: 250  HLSLNDLVFHRKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSY 429
               L DL F +                        +  KDRGG+W+R TFKI+LSY G  
Sbjct: 75   AAGLADL-FGKDENGYSLDTNGEDYTAPSENQTSTKSSKDRGGRWERVTFKIVLSYHGGS 133

Query: 430  FDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQV 609
            FDGWQKQPGLNTVQGL+EK LG+FV  KK K+LEA+ +P+E    VAGRTDKGV+AL QV
Sbjct: 134  FDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQV 193

Query: 610  CSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGE 789
            CSFYTWRKDV + +++  IN  A + L+   V +V REFHPNF+AKWRRYLYI PL E  
Sbjct: 194  CSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDE-- 251

Query: 790  GDGMCNSTKEILKMEKVSATAES-ECKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARD 966
                    K I   E+ + T E  EC    KP +FDV  V++ ++QLEG+SLSYK+FARD
Sbjct: 252  ------DVKLISGEEQSAKTVEGPECN--IKPQSFDVGKVDKIIRQLEGKSLSYKMFARD 303

Query: 967  TQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKL 1125
            TQASRS GP TEC ++H+RAAVA L    ++    T   +C+ELVANRFLRK+
Sbjct: 304  TQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKM 356


>gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group]
            gi|125598125|gb|EAZ37905.1| hypothetical protein
            OsJ_22255 [Oryza sativa Japonica Group]
          Length = 417

 Score =  336 bits (862), Expect = 9e-90
 Identities = 182/353 (51%), Positives = 229/353 (64%), Gaps = 4/353 (1%)
 Frame = +1

Query: 79   ITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLL---AG 249
            ++  T  +E D   +H HY+H D C  LRWTAKESYEY+Y RPW  + +FY+ L+   AG
Sbjct: 18   LSFSTAAAEGD---EHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAG 74

Query: 250  HLSLNDLVFHRKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSY 429
               L DL F +                        +  KDRGG+W+R TFKI+LSY G  
Sbjct: 75   AAGLADL-FGKDENGYSLDTNGEDYTAPSENQTSTKSSKDRGGRWERVTFKIVLSYHGGS 133

Query: 430  FDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQV 609
            FDGWQKQPGLNTVQGL+EK LG+FV  KK K+LEA+ +P+E    VAGRTDKGV+AL QV
Sbjct: 134  FDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQV 193

Query: 610  CSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGE 789
            CSFYTWRKDV + +++  IN  A + L+   V +V REFHPNF+AKWRRYLYI PL E  
Sbjct: 194  CSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDE-- 251

Query: 790  GDGMCNSTKEILKMEKVSATAES-ECKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARD 966
                    K I   E+ + T E  EC    KP +FDV  V++ ++QLEG+SLSYK+FARD
Sbjct: 252  ------DVKLISGEEQSAKTVEGPECN--IKPQSFDVGKVDKIIRQLEGKSLSYKMFARD 303

Query: 967  TQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKL 1125
            TQASRS GP TEC ++H+RAAVA L    ++    T   +C+ELVANRFLRK+
Sbjct: 304  TQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKM 356


>ref|XP_004965639.1| PREDICTED: uncharacterized protein LOC101778125 [Setaria italica]
          Length = 422

 Score =  332 bits (852), Expect = 1e-88
 Identities = 179/339 (52%), Positives = 221/339 (65%), Gaps = 4/339 (1%)
 Frame = +1

Query: 121  KHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLL---AGHLSLNDLVFHRKAE 291
            +HVHY H D C  LRWTAKESYEY+Y RPW  + +FY+ L+   AG   L  L    K E
Sbjct: 36   EHVHYKHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLAKLF--GKDE 93

Query: 292  VTRTCGTPLXXXXXXXXXXXXRVK-KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTV 468
               +  T               +  KDRGG+W+R TFKI+LSY G  FDGWQKQPGLNTV
Sbjct: 94   KDYSLDTTGENYLAPSEKQTATISSKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNTV 153

Query: 469  QGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTAL 648
            QGL+EK LG+FV  +K K+LEA+ +PIE    VAGRTDKGV+AL QVCSFYTWRKDV + 
Sbjct: 154  QGLVEKHLGQFVDERKAKQLEARSLPIEGGAIVAGRTDKGVTALQQVCSFYTWRKDVKSE 213

Query: 649  EVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILK 828
            +++  I   A + LK   V EV REFHPNF+AKWRRY+YI PL E     +     E+LK
Sbjct: 214  DIKDAIKEAAPDKLKPLHVSEVAREFHPNFAAKWRRYMYIFPLDEDAKSIIGEGHSEVLK 273

Query: 829  MEKVSATAESECKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECT 1008
                        + + KP +FDVA V++ L++L G++LSYK+FARDTQASRS GP TEC 
Sbjct: 274  ----------NSEHIIKPQSFDVAKVDEILRKLAGKTLSYKMFARDTQASRSVGPPTECF 323

Query: 1009 IYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKL 1125
            ++H+RAA A L C    D     +VMCVELVANRFLRK+
Sbjct: 324  MFHSRAAAAKLYC-ANEDYKEGLSVMCVELVANRFLRKM 361


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  330 bits (847), Expect = 5e-88
 Identities = 184/382 (48%), Positives = 240/382 (62%), Gaps = 23/382 (6%)
 Frame = +1

Query: 79   ITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHLS 258
            + M T  + +DY    VHY+H D C+  RWTA+ESY+++Y RPW+ + +FYS+L+ G  S
Sbjct: 27   VEMETHSTNKDY----VHYNHSDPCRFSRWTARESYQFMYGRPWQQVLDFYSNLVNGTTS 82

Query: 259  LNDLV-FHRKAEVTRTCGTPLXXXXXXXXXXXXRVKK--DRGGKWDRRTFKILLSYDGSY 429
             + L   H+K +V                    ++KK  +R G+W R TFK++L Y G+ 
Sbjct: 83   FSSLFPLHKKYQVD---DDDYDAEIPEISDDKVKLKKSEERSGRWARATFKVVLGYHGAS 139

Query: 430  FDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQV 609
            FDGWQKQPGLNTVQGL+E++LG+FV  KK + L+ K +P+EA   VAGRTDKGV+AL QV
Sbjct: 140  FDGWQKQPGLNTVQGLVERSLGRFVDEKKAQLLKDKCLPLEACTVVAGRTDKGVTALQQV 199

Query: 610  CSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGE 789
            CSFYTWRKD+T  ++E  IN  A   LK  SV EV R FHPNFSAKWRRYLYI P ++ E
Sbjct: 200  CSFYTWRKDITCQDIEEAINNAALGKLKAKSVSEVSRVFHPNFSAKWRRYLYIFPFNDEE 259

Query: 790  GDGMCNSTKEILK-MEKVSATAESECKQLN-------------------KPYNFDVALVN 909
             +   N   E L+  EK+    ES C + N                   KP +F V+ V+
Sbjct: 260  DEEQSNKNGENLETYEKI----ESGCGEWNDESFGNLIIDDSEELESGKKPSSFSVSRVD 315

Query: 910  QFLQQLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVMC 1089
            Q L+ LEG+ LSYK+FARDT+ASR+ GP TEC IYHARAA A LP     +G   + +MC
Sbjct: 316  QLLRLLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPTSDCTEG---RKIMC 372

Query: 1090 VELVANRFLRKL*EKLLPGQIQ 1155
            VELVANRFLRK+   L+   I+
Sbjct: 373  VELVANRFLRKMVRVLVATSIR 394


>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  330 bits (845), Expect = 9e-88
 Identities = 182/379 (48%), Positives = 232/379 (61%), Gaps = 22/379 (5%)
 Frame = +1

Query: 55   TKTSATTKITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYS 234
            T    T + T  + + E      +V Y+H D CK  RWTA+ES+++++ RPW+++ +FYS
Sbjct: 15   TTKQQTRRFTKNSVVMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYS 74

Query: 235  HLLAGHLSLNDLVFHRKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLS 414
              + G LSL +L   +  +V   C   +                D+ G+W R TFKI+LS
Sbjct: 75   KSVNGQLSLLELFGTQAHDVH--CDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLS 132

Query: 415  YDGSYFDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVS 594
            Y G  FDGWQKQPGLNTVQGL+EK+LG+FV  KK ++L+ +  P+E   SVAGRTDKGVS
Sbjct: 133  YHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVS 192

Query: 595  ALHQVCSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILP 774
            AL QVCSFYTWRKDV   E+E  IN +A   ++V S+ EV R FHPNFSAKWRRYLYI P
Sbjct: 193  ALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFP 252

Query: 775  LHEG------EGDG-------------MCNSTKEILKMEKVS---ATAESECKQLNKPYN 888
            L++G      EG+G               N   E+   E V     + E E +   KP +
Sbjct: 253  LNDGENREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSIISDEDELQGAKKPRS 312

Query: 889  FDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGH 1068
            F V  VNQ LQQLEG+ LSYK+FARDT+ASR+ GP TEC +YHARA    LP      G 
Sbjct: 313  FSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSPDHEKGI 372

Query: 1069 RTKNVMCVELVANRFLRKL 1125
            R   VMCVEL+ANRFLRK+
Sbjct: 373  R---VMCVELIANRFLRKM 388


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  330 bits (845), Expect = 9e-88
 Identities = 188/398 (47%), Positives = 235/398 (59%), Gaps = 22/398 (5%)
 Frame = +1

Query: 28   LQQPPLSRETKTSATTKITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRP 207
            LQ P      +     K+T   T ++      + HY+H D CK  RWTA+ES++++Y RP
Sbjct: 5    LQCPAKPLANRYQQMEKLTQTETKTQNKI---YFHYNHTDSCKSFRWTARESFQFMYARP 61

Query: 208  WKDIQNFYSHLLAGHLSLNDLVFHRKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWD 387
            W+++ +FYS+++ G LS  +L F  +    R                     +DR G+W 
Sbjct: 62   WQEVSDFYSNVVNGRLSFLEL-FRSQMHFVRDDAKIQEDSNKTELEHFSN--EDRFGRWA 118

Query: 388  RRTFKILLSYDGSYFDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISV 567
            R  FKI LSY G  FDGWQKQPGLNTVQGL+EK+LGKFV  KK ++L+    P+E    V
Sbjct: 119  RVNFKIDLSYHGGSFDGWQKQPGLNTVQGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVV 178

Query: 568  AGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAK 747
            AGRTDKGVSAL QVCSFYTWRKDV   E+E  IN+ A   ++V SV EV R FHPNFSAK
Sbjct: 179  AGRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINSSAPGKIRVISVSEVSRVFHPNFSAK 238

Query: 748  WRRYLYILPLHEGEG-------------------DGMCNSTKEILKMEKVSATAESECKQ 870
            WRRYLYI P+++GE                    D   N   E+   E V     S+  +
Sbjct: 239  WRRYLYIFPINDGEDSEQSFDSEDLENLRSYEKYDEQRNGCAELTSEEHVEELITSDKDE 298

Query: 871  L---NKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATL 1041
            L    KP  F +  VNQ LQQLEG+ LSYKIFARDT+ASR+ GP TEC IYHARA  A L
Sbjct: 299  LEGAKKPRIFSICRVNQLLQQLEGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARL 358

Query: 1042 PCIGKHDGHRTKNVMCVELVANRFLRKL*EKLLPGQIQ 1155
            PC    +G   + VMCVELVANRFLRK+   L+   I+
Sbjct: 359  PCPDHGEG---RKVMCVELVANRFLRKMVRVLVATSIR 393


>gb|AFW76096.1| pseudouridylate synthase [Zea mays]
          Length = 422

 Score =  329 bits (844), Expect = 1e-87
 Identities = 183/369 (49%), Positives = 232/369 (62%), Gaps = 5/369 (1%)
 Frame = +1

Query: 34   QPPLSRETKTSATTKITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWK 213
            +P ++   K  A   +T     +      +HVHY H D C  LRWTAKESYEY+Y RPW 
Sbjct: 6    RPLMATAAKARAPPAVTASKAAAAAVELEEHVHYKHTDACHQLRWTAKESYEYMYARPWS 65

Query: 214  DIQNFYSHLL---AGHLSLNDLVFHRKAEVTR-TCGTPLXXXXXXXXXXXXRVKKDRGGK 381
             + +FY+ L+   AG   L  L  + + + T  T G                  K RGG+
Sbjct: 66   RVVDFYAELVRAGAGAAGLAKLFGNDEKDYTLYTAGE--NYLTPSEKPTTTTFSKGRGGR 123

Query: 382  WDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAI 561
            W+R TFK+++SY G  FDGWQKQPGLNTVQGL+EK LG+FV  +K K+LEA+ +PIE   
Sbjct: 124  WERVTFKVVISYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCA 183

Query: 562  SVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFS 741
             VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + LK   V EV REFHPNF+
Sbjct: 184  IVAGRTDKGVTALQQVCSFYTWRKDVKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFA 243

Query: 742  AKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESECKQLNKPYNFDVALVNQFLQ 921
            AKWRRY+YI PL E            IL   + S T E+    + KP +FDV+ V++ L+
Sbjct: 244  AKWRRYMYIFPLDE--------DADLILGEAQSSKTLENSEHNI-KPQSFDVSKVDEILK 294

Query: 922  QLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGK-HDGHRTKNVMCVEL 1098
             L G++LSYK+FARDTQASRS GP TEC ++H+RAAVA L    + H G     VMCVEL
Sbjct: 295  PLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMV--VMCVEL 352

Query: 1099 VANRFLRKL 1125
            VANRFLRK+
Sbjct: 353  VANRFLRKM 361


>gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
          Length = 444

 Score =  328 bits (840), Expect = 3e-87
 Identities = 182/394 (46%), Positives = 238/394 (60%), Gaps = 23/394 (5%)
 Frame = +1

Query: 43   LSRETKTSATTKITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQ 222
            +SR+ K      I      +E + K  +VHY+H D C   RWTA+ESY ++Y+R W+D+ 
Sbjct: 16   ISRKKKLGRFRDIISSVMENEAENKV-YVHYNHSDSCSSARWTARESYRFMYDRAWQDVI 74

Query: 223  NFYSHLLAGHLSLNDLVFHRKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFK 402
            +FYS+++ G L+L+ L            GT                K +R G+W+R TFK
Sbjct: 75   DFYSNVVNGRLTLSTLF-----------GTETSIHDDSETVEVSDEKGERSGRWERVTFK 123

Query: 403  ILLSYDGSYFDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTD 582
            I++SY+G  FDGWQKQPGLNTVQ ++E++LG+FV  KK + L+ K  P+E    VAGRTD
Sbjct: 124  IIISYNGGAFDGWQKQPGLNTVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTD 183

Query: 583  KGVSALHQVCSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYL 762
            KGVSA+ QVCSFYTWRKDV   ++E  IN++A   L+V SV EV R FHPNFSAKWR YL
Sbjct: 184  KGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYL 243

Query: 763  YILPLHEGEGDGM-CNSTKEI-------------------LKMEKVSATAESE---CKQL 873
            YI PL   E +   C + KE+                   ++ E V     S+    +  
Sbjct: 244  YIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNGYLENIRWENVENLIISDNMGLEAA 303

Query: 874  NKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIG 1053
            NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR+ GP TEC +YHARAA A +PC  
Sbjct: 304  NKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCSD 363

Query: 1054 KHDGHRTKNVMCVELVANRFLRKL*EKLLPGQIQ 1155
              +G   + VMCVELVANRFLRK+   L+   I+
Sbjct: 364  HGEG---REVMCVELVANRFLRKMVRVLVATSIR 394


>gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
          Length = 446

 Score =  327 bits (839), Expect = 4e-87
 Identities = 182/394 (46%), Positives = 238/394 (60%), Gaps = 23/394 (5%)
 Frame = +1

Query: 43   LSRETKTSATTKITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQ 222
            +SR+ K      I      +E + K  +VHY+H D C   RWTA+ESY ++Y+R W+D+ 
Sbjct: 16   ISRKKKLGRFRDIISSVMENEAENKV-YVHYNHSDSCSSARWTARESYRFMYDRAWQDVI 74

Query: 223  NFYSHLLAGHLSLNDLVFHRKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFK 402
            +FYS+++ G L+L+ L            GT                K +R G+W+R TFK
Sbjct: 75   DFYSNVVNGRLTLSTLF-----------GTETSIHDDSETVEVSDEKGERSGRWERVTFK 123

Query: 403  ILLSYDGSYFDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTD 582
            I++SY+G  FDGWQKQPGLNTVQ ++E++LG+FV  KK + L+ K  P+E    VAGRTD
Sbjct: 124  IIISYNGGAFDGWQKQPGLNTVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTD 183

Query: 583  KGVSALHQVCSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYL 762
            KGVSA+ QVCSFYTWRKDV   ++E  IN++A   L+V SV EV R FHPNFSAKWR YL
Sbjct: 184  KGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYL 243

Query: 763  YILPLHEGEGDGM-CNSTKEI-------------------LKMEKVSATAESE---CKQL 873
            YI PL   E +   C + KE+                   ++ E V     S+    +  
Sbjct: 244  YIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNGYLENIRWENVENLIISDNMGLEAA 303

Query: 874  NKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIG 1053
            NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR+ GP TEC +YHARAA A +PC  
Sbjct: 304  NKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPC-S 362

Query: 1054 KHDGHRTKNVMCVELVANRFLRKL*EKLLPGQIQ 1155
             +D    + VMCVELVANRFLRK+   L+   I+
Sbjct: 363  VNDHGEGREVMCVELVANRFLRKMVRVLVATSIR 396


>gb|AFK45334.1| unknown [Medicago truncatula]
          Length = 400

 Score =  327 bits (839), Expect = 4e-87
 Identities = 176/346 (50%), Positives = 224/346 (64%), Gaps = 4/346 (1%)
 Frame = +1

Query: 100  SEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHLSLNDLVFH 279
            SE+D  + HVHY+H    K  RW A+ES+E++Y RPW+ + +FYS+ + G+LSL  L+F 
Sbjct: 5    SERD--SHHVHYNHTHPSKYARWNARESFEFMYARPWQRVNHFYSNTVRGNLSL-PLLFQ 61

Query: 280  RKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSYFDGWQKQPGL 459
             +         P                KDR GKW R  FKILLSY G  FDGWQKQP L
Sbjct: 62   SQTLPVHDSRVP------EISEFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNL 115

Query: 460  NTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDV 639
            NTVQ ++E +LGKFV   K + L+ KG+PI+   +VAGRTDKGV+AL QVCSFYTW+KD+
Sbjct: 116  NTVQSVVEVSLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDI 175

Query: 640  TALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEG----EGDGMCN 807
               E+E  IN  A   L+V SVYEV R FHPNFSAKWRRYLYI PL +G    +  G   
Sbjct: 176  KPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGE 235

Query: 808  STKEILKMEKVSATAESECKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSS 987
            S    +  E   + ++ E ++ NK Y F V  VN+ LQ+LEG+ LSYK+FARDT+ASR+ 
Sbjct: 236  SCDSFIYNEICDSDSKDELEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRND 295

Query: 988  GPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKL 1125
            GP TEC ++HARA  A LP     +G  T+ VMC+ELVANRFLRK+
Sbjct: 296  GPPTECFVHHARAMEAKLPI--TENGEETR-VMCIELVANRFLRKM 338


>gb|ACF83621.1| unknown [Zea mays]
          Length = 414

 Score =  327 bits (839), Expect = 4e-87
 Identities = 182/366 (49%), Positives = 230/366 (62%), Gaps = 5/366 (1%)
 Frame = +1

Query: 43   LSRETKTSATTKITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQ 222
            ++   K  A   +T     +      +HVHY H D C  LRWTAKESYEY+Y RPW  + 
Sbjct: 1    MATAAKARAPPAVTASKAAAAAVELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVV 60

Query: 223  NFYSHLL---AGHLSLNDLVFHRKAEVTR-TCGTPLXXXXXXXXXXXXRVKKDRGGKWDR 390
            +FY+ L+   AG   L  L  + + + T  T G                  K RGG+W+R
Sbjct: 61   DFYAELVRAGAGAAGLAKLFGNDEKDYTLYTAGE--NYLTPSEKPTTTTFSKGRGGRWER 118

Query: 391  RTFKILLSYDGSYFDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVA 570
             TFK+++SY G  FDGWQKQPGLNTVQGL+EK LG+FV  +K K+LEA+ +PIE    VA
Sbjct: 119  VTFKVVISYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVA 178

Query: 571  GRTDKGVSALHQVCSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKW 750
            GRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + LK   V EV REFHPNF+AKW
Sbjct: 179  GRTDKGVTALQQVCSFYTWRKDVKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKW 238

Query: 751  RRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESECKQLNKPYNFDVALVNQFLQQLE 930
            RRY+YI PL E            IL   + S T E+    + KP +FDV+ V++ L+ L 
Sbjct: 239  RRYMYIFPLDE--------DADLILGEAQSSKTLENSEHNI-KPQSFDVSKVDEILKPLA 289

Query: 931  GRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGK-HDGHRTKNVMCVELVAN 1107
            G++LSYK+FARDTQASRS GP TEC ++H+RAAVA L    + H G     VMCVELVAN
Sbjct: 290  GKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMV--VMCVELVAN 347

Query: 1108 RFLRKL 1125
            RFLRK+
Sbjct: 348  RFLRKM 353


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  327 bits (837), Expect = 7e-87
 Identities = 185/387 (47%), Positives = 234/387 (60%), Gaps = 30/387 (7%)
 Frame = +1

Query: 55   TKTSATTKITMPTTLSEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYS 234
            T    T + T  + + E      +V Y+H D CK  RWTA+ES+++++ RPW+++ +FYS
Sbjct: 15   TTKQQTRRFTKNSVVMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYS 74

Query: 235  HLLAGHLSLNDL----VFH----RKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDR 390
              + G LSL +L    VF     +KA     C   +                D+ G+W R
Sbjct: 75   KSVNGQLSLLELFGTQVFFTMELKKAHDVH-CDDKIEEVSNETGLLEGVSNVDKSGRWAR 133

Query: 391  RTFKILLSYDGSYFDGWQKQPGLNTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVA 570
             TFKI+LSY G  FDGWQKQPGLNTVQGL+EK+LG+FV  KK ++L+ +  P+E   SVA
Sbjct: 134  VTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVA 193

Query: 571  GRTDKGVSALHQVCSFYTWRKDVTALEVEAEINTLASECLKVASVYEVPREFHPNFSAKW 750
            GRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   ++V S+ EV R FHPNFSAKW
Sbjct: 194  GRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKW 253

Query: 751  RRYLYILPLHEG------EGDG-------------MCNSTKEILKMEKVS---ATAESEC 864
            RRYLYI PL++G      EG+G               N   E+   E V     + E E 
Sbjct: 254  RRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSIISDEDEL 313

Query: 865  KQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTIYHARAAVATLP 1044
            +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+ GP TEC +YHARA    LP
Sbjct: 314  QGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLP 373

Query: 1045 CIGKHDGHRTKNVMCVELVANRFLRKL 1125
                  G R   VMCVEL+ANRFLRK+
Sbjct: 374  SPDHEKGIR---VMCVELIANRFLRKM 397


>ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622951 [Citrus sinensis]
          Length = 454

 Score =  326 bits (836), Expect = 1e-86
 Identities = 182/357 (50%), Positives = 221/357 (61%), Gaps = 20/357 (5%)
 Frame = +1

Query: 115  KAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHLSLNDLVFHRKAEV 294
            K  +VHY+H D CK  RWTAKESYE++  RPW+D+ +FYS +++G L+L+DL      E 
Sbjct: 42   KKVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLSDLF---GTER 98

Query: 295  TRTCGTPLXXXXXXXXXXXXRVKKDRGG--KWDRRTFKILLSYDGSYFDGWQKQPGLNTV 468
            TRT                    +DR G  +W R  FKI++SY G  FDGWQKQP LNTV
Sbjct: 99   TRTSSIHNDENEIPEVEAGSDANEDRAGSGRWARANFKIVVSYHGPSFDGWQKQPDLNTV 158

Query: 469  QGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTAL 648
            QGL+EK LG FV  K+ K L+ K  P+E    VAGRTDKGV+AL QVCSFYTWRKDV   
Sbjct: 159  QGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTWRKDVKPS 218

Query: 649  EVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGE-GDGMCNSTKEI- 822
            E+E  IN+ A   ++V SV +V R FHPNFSAKWRRYLYI PL++GE  +   +S  E+ 
Sbjct: 219  EIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQSIDSEVEVE 278

Query: 823  ----------------LKMEKVSATAESECKQLNKPYNFDVALVNQFLQQLEGRSLSYKI 954
                              +E +    E       KP NF +  VN  LQ+LEG+ LSYK 
Sbjct: 279  NFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKT 338

Query: 955  FARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKL 1125
            FARDT+ASR+ GP TEC IYHARA  ATLPC     G   K VMCVELVANRFLRK+
Sbjct: 339  FARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRK-VMCVELVANRFLRKM 394


>ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citrus clementina]
            gi|557556408|gb|ESR66422.1| hypothetical protein
            CICLE_v10008288mg [Citrus clementina]
          Length = 447

 Score =  326 bits (836), Expect = 1e-86
 Identities = 182/357 (50%), Positives = 221/357 (61%), Gaps = 20/357 (5%)
 Frame = +1

Query: 115  KAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHLSLNDLVFHRKAEV 294
            K  +VHY+H D CK  RWTAKESYE++  RPW+D+ +FYS +++G L+L+DL      E 
Sbjct: 35   KKVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLSDLF---GTER 91

Query: 295  TRTCGTPLXXXXXXXXXXXXRVKKDRGG--KWDRRTFKILLSYDGSYFDGWQKQPGLNTV 468
            TRT                    +DR G  +W R  FKI++SY G  FDGWQKQP LNTV
Sbjct: 92   TRTSSIHNDENEIPEVEAGSDANEDRAGSGRWARANFKIVVSYHGPSFDGWQKQPDLNTV 151

Query: 469  QGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTAL 648
            QGL+EK LG FV  K+ K L+ K  P+E    VAGRTDKGV+AL QVCSFYTWRKDV   
Sbjct: 152  QGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTWRKDVKPS 211

Query: 649  EVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEGE-GDGMCNSTKEI- 822
            E+E  IN+ A   ++V SV +V R FHPNFSAKWRRYLYI PL++GE  +   +S  E+ 
Sbjct: 212  EIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQSIDSEVEVE 271

Query: 823  ----------------LKMEKVSATAESECKQLNKPYNFDVALVNQFLQQLEGRSLSYKI 954
                              +E +    E       KP NF +  VN  LQ+LEG+ LSYK 
Sbjct: 272  NFHTSNNVGKQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKT 331

Query: 955  FARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKL 1125
            FARDT+ASR+ GP TEC IYHARA  ATLPC     G   K VMCVELVANRFLRK+
Sbjct: 332  FARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRK-VMCVELVANRFLRKM 387


>ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
            gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase A
            [Medicago truncatula]
          Length = 400

 Score =  326 bits (835), Expect = 1e-86
 Identities = 175/346 (50%), Positives = 223/346 (64%), Gaps = 4/346 (1%)
 Frame = +1

Query: 100  SEQDYKAKHVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHLSLNDLVFH 279
            SE+D  + HVHY+H    K  RW A+ES+E++Y RPW+ + +FYS+ + G+ SL  L+F 
Sbjct: 5    SERD--SHHVHYNHTHPSKYARWNARESFEFMYARPWQRVNHFYSNTVRGNFSL-PLLFQ 61

Query: 280  RKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSYFDGWQKQPGL 459
             +         P                KDR GKW R  FKILLSY G  FDGWQKQP L
Sbjct: 62   SQTLPVHDSRVP------EISEFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNL 115

Query: 460  NTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDV 639
            NTVQ ++E +LGKFV   K + L+ KG+PI+   +VAGRTDKGV+AL QVCSFYTW+KD+
Sbjct: 116  NTVQSVVEVSLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDI 175

Query: 640  TALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEG----EGDGMCN 807
               E+E  IN  A   L+V SVYEV R FHPNFSAKWRRYLYI PL +G    +  G   
Sbjct: 176  KPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGE 235

Query: 808  STKEILKMEKVSATAESECKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSS 987
            S    +  E   + ++ E ++ NK Y F V  VN+ LQ+LEG+ LSYK+FARDT+ASR+ 
Sbjct: 236  SCDSFIYNEICDSDSKDELEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRND 295

Query: 988  GPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKL 1125
            GP TEC ++HARA  A LP     +G  T+ VMC+ELVANRFLRK+
Sbjct: 296  GPPTECFVHHARAMEAKLPI--TENGEETR-VMCIELVANRFLRKM 338


>ref|XP_002331405.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  323 bits (828), Expect = 8e-86
 Identities = 181/364 (49%), Positives = 227/364 (62%), Gaps = 30/364 (8%)
 Frame = +1

Query: 124  HVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHLSLNDL----VFH---- 279
            +V Y+H D CK  RWTA+ES+++++ RPW+++ +FYS  + G LSL +L    VF     
Sbjct: 9    YVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFGTQVFFTMEL 68

Query: 280  RKAEVTRTCGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSYFDGWQKQPGL 459
            +KA     C   +                D+ G+W R TFKI+LSY G  FDGWQKQPGL
Sbjct: 69   KKAHDVH-CDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGL 127

Query: 460  NTVQGLLEKTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDV 639
            NTVQGL+EK+LG+FV  KK ++L+ +  P+E   SVAGRTDKGVSAL QVCSFYTWRKDV
Sbjct: 128  NTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDV 187

Query: 640  TALEVEAEINTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPLHEG------EGDG- 798
               E+E  IN +A   ++V S+ EV R FHPNFSAKWRRYLYI PL++G      EG+G 
Sbjct: 188  KPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGG 247

Query: 799  ------------MCNSTKEILKMEKVS---ATAESECKQLNKPYNFDVALVNQFLQQLEG 933
                          N   E+   E V     + E E +   KP +F V  VNQ LQQLEG
Sbjct: 248  IENFSSHENCEKQRNECGELASEENVENSIISDEDELQGAKKPRSFSVCRVNQLLQQLEG 307

Query: 934  RSLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANRF 1113
            + LSYK+FARDT+ASR+ GP TEC +YHARA    LP      G R   VMCVEL+ANRF
Sbjct: 308  KLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSPDHEKGIR---VMCVELIANRF 364

Query: 1114 LRKL 1125
            LRK+
Sbjct: 365  LRKM 368


>ref|XP_006283804.1| hypothetical protein CARUB_v10004903mg [Capsella rubella]
            gi|482552509|gb|EOA16702.1| hypothetical protein
            CARUB_v10004903mg [Capsella rubella]
          Length = 421

 Score =  319 bits (817), Expect = 2e-84
 Identities = 174/370 (47%), Positives = 233/370 (62%), Gaps = 26/370 (7%)
 Frame = +1

Query: 124  HVHYDHQDLCKDLRWTAKESYEYLYNRPWKDIQNFYSHLLAGHLSLNDLVFHRKAEVTRT 303
            +VHY H D C   RW A+E++ ++Y+RPW+ + +FYS+ + G+ S+ +L F  K  +   
Sbjct: 7    YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNTSVLNL-FQPKKHLVHD 65

Query: 304  CGTPLXXXXXXXXXXXXRVKKDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 483
             G               R K  R G+W+R  FKI+LSY+G+ FDGWQKQP L+TVQG++E
Sbjct: 66   DGITEGIPLESELETSTR-KDGRSGRWERVNFKIVLSYNGTSFDGWQKQPDLHTVQGVVE 124

Query: 484  KTLGKFVGNKKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAE 663
            K+LG+FV  KK + L+ K  P+E  + VAGRTDKGVSAL+QVCSFYTWRKD+  + +E  
Sbjct: 125  KSLGEFVDEKKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDA 184

Query: 664  INTLASECLKVASVYEVPREFHPNFSAKWRRYLYILPL---------------------H 780
            IN  AS  LKV S+ +V R FHPNFSAKWRRYLYI PL                     H
Sbjct: 185  INKDASGKLKVVSISKVSRSFHPNFSAKWRRYLYIFPLDDIEPLCEGGKNHENYIFDENH 244

Query: 781  EGEGDGMCN--STKEILKMEKVSATAESECKQL---NKPYNFDVALVNQFLQQLEGRSLS 945
            E + +G+ +  +T+E++  E      E   K+L    KP +F V+ V+Q LQQL+G+ LS
Sbjct: 245  EKQRNGLLSEENTEEVVLSEDDELEIEETSKELQVVEKPSDFSVSKVDQILQQLQGKVLS 304

Query: 946  YKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKL 1125
            YK+FARDT+A+R+ GP TEC +YHARAA   L C    +G R   VMCVELVANRFLRK+
Sbjct: 305  YKMFARDTKAARNEGPPTECFMYHARAAEIKLSCSDHVEGRR---VMCVELVANRFLRKM 361

Query: 1126 *EKLLPGQIQ 1155
               L+   I+
Sbjct: 362  VRVLVATSIR 371