BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00014791
         (1139 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   215   2e-53
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   213   2e-52
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   211   4e-52
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   211   6e-52
gb|EOY10269.1| Sigma factor A isoform 2 [Theobroma cacao]             210   1e-51
gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]             210   1e-51
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps...   210   1e-51
ref|XP_006302141.1| hypothetical protein CARUB_v10020145mg [Caps...   210   1e-51
gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali...   209   1e-51
gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe...   209   2e-51
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   208   3e-51
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr...   208   3e-51
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              208   3e-51
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   208   4e-51
ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Popu...   207   5e-51
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   207   5e-51
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha...   207   6e-51
ref|NP_001185314.1| RNA polymerase sigma subunit 1 [Arabidopsis ...   207   6e-51
gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]             206   1e-50
dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   206   1e-50

>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
            gi|548832002|gb|ERM94804.1| hypothetical protein
            AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  215 bits (548), Expect = 2e-53
 Identities = 132/355 (37%), Positives = 203/355 (57%), Gaps = 9/355 (2%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSK--PFHDQGMSTITTLPRYGIIVCARKVT-NART 950
            M+TAA++GIS GKRLL +SF   ++ +  P +D G +    +     IV  +       +
Sbjct: 1    MATAAVIGISTGKRLLRSSFLASDIERVIPIYDFGATQFPAVSHKSFIVSKKSPGFGPNS 60

Query: 949  RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTML 770
               +  QY+ A +           E + +  +S+S    + N   + SLE+L++++K+ML
Sbjct: 61   PSNRQTQYINAIK-----------EHVNAPSSSSSSSTTEANPDFESSLEALILLQKSML 109

Query: 769  EKQWE------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKGDVMNKILR 608
            EKQW         S D  E+      V S   SAR+RR + RR   +    G V+   +R
Sbjct: 110  EKQWNLSFDQAGTSTDLCEESCKKLGVISSGASARQRRNSLRRPLNQRA--GTVL---VR 164

Query: 607  RNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKAKL 428
            R K+   ++   +  G            ++L   EV  LS KI+ GL L   + RLK KL
Sbjct: 165  RKKQATPIVSPELLQGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLSLEEHKSRLKEKL 224

Query: 427  GYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGDLI 248
            G++PS    A+S+ +S  EL++KL+E S+A+++L MSN+RLV+SIA+KY+N+G+E+ DLI
Sbjct: 225  GFDPSDELLASSLKISRSELHSKLIECSLAKEKLAMSNIRLVMSIAQKYDNMGIEMADLI 284

Query: 247  REGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERV 83
            + GL GL RGIEKFD SKG+  STYVYWWIRQ ++RA+ ++S+T +   H+ ER+
Sbjct: 285  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAMVENSRTLRLPTHLHERL 339


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  213 bits (541), Expect = 2e-52
 Identities = 135/359 (37%), Positives = 209/359 (58%), Gaps = 13/359 (3%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPFH---DQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G+S GKRLL++S+ + ++ +      D G +    +P   +IV  +      T
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 949  --RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKT 776
                 +  Q +KA ++     P        S     S+  E ++  +  S+E+L++++K+
Sbjct: 61   FPASNQQNQSIKALKEHVDDAPTIADPWFQSYN---SNDLEVESSEMGYSVEALLLLQKS 117

Query: 775  MLEKQW------EEYSNDGSEDKEASEV-VRSHKPSARERRLASRRKST-EGCYKGDVMN 620
            MLEKQW      E  + + S+ K+  +V V     SAR+RR+ ++RK+  + C    + +
Sbjct: 118  MLEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRKTAIKTCGAMQLKS 177

Query: 619  KILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRL 440
            KI        +L H    + +G  +        +L   EV  LS+KI+ GL L   + RL
Sbjct: 178  KI-----SPELLQHRLKGYVKGLVSEE------LLSHAEVVNLSEKIKVGLSLEEHKSRL 226

Query: 439  KAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEI 260
            K KLG EPS  Q A S+ +S  EL A+++E S+AR++L MSNVRLV+SIA+KY+NLG E+
Sbjct: 227  KEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEM 286

Query: 259  GDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERV 83
            GDL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER+
Sbjct: 287  GDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERL 345


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  211 bits (537), Expect = 4e-52
 Identities = 137/364 (37%), Positives = 209/364 (57%), Gaps = 18/364 (4%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF----HDQGMSTITTLPRYGIIVCARKVTNAR 953
            M TAA++G+SAG RLL +S  + +V++      +D G     + P   +I  A+K +N  
Sbjct: 2    MGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLI-SAKKPSNYT 60

Query: 952  TRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTM 773
                +  Q +KA ++    V  A+A   A  + S+S  E +D ++L   +E+ ++++K+M
Sbjct: 61   PSSNRSIQSMKALKEH---VESASAPSTADPDLSSSSSEVEDEEYL---VEAFLLLQKSM 114

Query: 772  LEKQW---------EEYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKGDVMN 620
            LEKQW         EE  + G + ++    V     SAR+RR++ R++         VMN
Sbjct: 115  LEKQWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKR---------VMN 165

Query: 619  KILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKRE-----EVTWLSQKIQCGLHLHR 455
            +  +   R R  L        G  N  +     V+  E     +V  LS KI+ GL L  
Sbjct: 166  E--KSKSRVRAAL--------GVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLED 215

Query: 454  IRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYEN 275
             + RLK ++G EP+  Q AAS+ MS  EL +KL+E S+AR++L MSNVRLV+SIA++Y+N
Sbjct: 216  HKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDN 275

Query: 274  LGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHM 95
            +G E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+
Sbjct: 276  MGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHL 335

Query: 94   QERV 83
             ER+
Sbjct: 336  HERL 339


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  211 bits (536), Expect = 6e-52
 Identities = 141/361 (39%), Positives = 212/361 (58%), Gaps = 15/361 (4%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G+SAGKRLL++SF + ++S+ F   +D G S  + +     +V A+K +N   
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLG-SANSQVGSTKNVVAAKKSSNYNP 60

Query: 949  R---KKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEK 779
                  +  Q +KA ++       +TAE  A    S     E+++  L  S+E+L++++K
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSI----EEESSELDYSVEALLLLQK 116

Query: 778  TMLEKQWE-----EYSNDGSEDKEASEV-VRSHKPSARERRLASRRKSTEGCYKGDVMNK 617
            +MLEKQW          D    K   +V V     SAR+RRL S++K           NK
Sbjct: 117  SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS-------QNK 169

Query: 616  -ILRRN--KRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQ 446
             +L++N  K+ R ++   +             +  +L   EV  LS+KI+ GL L   + 
Sbjct: 170  SVLQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229

Query: 445  RLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGL 266
            RLK +LG EPS  Q AAS+ +S  EL + LME S+AR++L MSNVRLV+SIA++Y+N+G 
Sbjct: 230  RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289

Query: 265  EIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQER 86
            ++ DLI+ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER
Sbjct: 290  DMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349

Query: 85   V 83
            +
Sbjct: 350  L 350


>gb|EOY10269.1| Sigma factor A isoform 2 [Theobroma cacao]
          Length = 450

 Score =  210 bits (534), Expect = 1e-51
 Identities = 135/357 (37%), Positives = 205/357 (57%), Gaps = 11/357 (3%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G++ GKRLL++SF++ ++ +     +D G S   T     +IV A+K +N   
Sbjct: 2    MATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIV-AKKSSNCSQ 60

Query: 949  RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTML 770
                  +  ++ +  +  V  A+    A      S+  E ++  L  S+E+L++++K+ML
Sbjct: 61   SLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSML 120

Query: 769  EKQWEEYSNDGSEDKEASEVVRSHKP------SARERRLASRRKSTEGCYKGDVMNK-IL 611
            EKQW          +  S  +    P      SAR+RR  ++RK         + NK I+
Sbjct: 121  EKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKIL-------IQNKSII 173

Query: 610  RRNKRQ-RVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKA 434
            + N +Q R L+   +             +  +L   EV  LS+KI+ GL L   R RLK 
Sbjct: 174  QPNAKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKE 233

Query: 433  KLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGD 254
            +LG EPS  Q A S+ +S  EL +KL+E S+AR++L MSNVRLV+SIA++Y+N+G E+ D
Sbjct: 234  RLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSD 293

Query: 253  LIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERV 83
            LI+ GL GL RGIEKFD SKGY  STYVYWWIRQ ++RAL ++S+T +   H+ ER+
Sbjct: 294  LIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL 350


>gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]
          Length = 508

 Score =  210 bits (534), Expect = 1e-51
 Identities = 135/357 (37%), Positives = 205/357 (57%), Gaps = 11/357 (3%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G++ GKRLL++SF++ ++ +     +D G S   T     +IV A+K +N   
Sbjct: 2    MATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIV-AKKSSNCSQ 60

Query: 949  RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTML 770
                  +  ++ +  +  V  A+    A      S+  E ++  L  S+E+L++++K+ML
Sbjct: 61   SLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSML 120

Query: 769  EKQWEEYSNDGSEDKEASEVVRSHKP------SARERRLASRRKSTEGCYKGDVMNK-IL 611
            EKQW          +  S  +    P      SAR+RR  ++RK         + NK I+
Sbjct: 121  EKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKIL-------IQNKSII 173

Query: 610  RRNKRQ-RVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKA 434
            + N +Q R L+   +             +  +L   EV  LS+KI+ GL L   R RLK 
Sbjct: 174  QPNAKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKE 233

Query: 433  KLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGD 254
            +LG EPS  Q A S+ +S  EL +KL+E S+AR++L MSNVRLV+SIA++Y+N+G E+ D
Sbjct: 234  RLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSD 293

Query: 253  LIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERV 83
            LI+ GL GL RGIEKFD SKGY  STYVYWWIRQ ++RAL ++S+T +   H+ ER+
Sbjct: 294  LIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL 350


>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
            gi|482570853|gb|EOA35041.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
          Length = 521

 Score =  210 bits (534), Expect = 1e-51
 Identities = 141/379 (37%), Positives = 213/379 (56%), Gaps = 33/379 (8%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTNA 956
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +++
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASSS 57

Query: 955  RT------RKKKHRQYLKASRDFEGLVPCATAELIASVET----SASDKE-----EDDNK 821
                       +H Q  KA  +        + +++AS E     + +DKE      DD+ 
Sbjct: 58   SNYSPSFPSSNRHTQSAKAVTE--------SVDVVASTEQPWVPNVTDKEFEEGGYDDDV 109

Query: 820  HLQQSLESLMIMEKTMLEKQWE-EYSNDGSEDKEASEVVRSHKP--------SARERRLA 668
             +  S+E+L++++K+MLEK W   +    S +      +R  K         SAR+RR+ 
Sbjct: 110  LIGHSVEALLLLQKSMLEKSWNLSFEKAASSESSGKRTIRKKKVPVITCSGISARQRRIG 169

Query: 667  SRRKSTEGCYKG--DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYT--VLKREEV 500
            +++K+     K   DV +      K+ R ++ S +F          K   +  VL   EV
Sbjct: 170  AKKKTNMTSAKAVSDVSS-----GKQVRSVMSSELFQHNRVRGGYVKGVISEDVLSHTEV 224

Query: 499  TWLSQKIQCGLHLHRIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKM 320
              LS+KI+ GL L   + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L M
Sbjct: 225  VRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAISLKISRAELQAWLMECHLAREKLAM 284

Query: 319  SNVRLVLSIARKYENLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITR 140
            SNVRLV+SIA++Y+NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++R
Sbjct: 285  SNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSR 344

Query: 139  ALADHSKTTQGAGHMQERV 83
            AL D+S+T +   H+ ER+
Sbjct: 345  ALVDNSRTLRLPTHLHERL 363


>ref|XP_006302141.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
            gi|565489005|ref|XP_006302142.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
            gi|482570851|gb|EOA35039.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
            gi|482570852|gb|EOA35040.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
          Length = 464

 Score =  210 bits (534), Expect = 1e-51
 Identities = 141/379 (37%), Positives = 213/379 (56%), Gaps = 33/379 (8%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTNA 956
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +++
Sbjct: 2    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASSS 58

Query: 955  RT------RKKKHRQYLKASRDFEGLVPCATAELIASVET----SASDKE-----EDDNK 821
                       +H Q  KA  +        + +++AS E     + +DKE      DD+ 
Sbjct: 59   SNYSPSFPSSNRHTQSAKAVTE--------SVDVVASTEQPWVPNVTDKEFEEGGYDDDV 110

Query: 820  HLQQSLESLMIMEKTMLEKQWE-EYSNDGSEDKEASEVVRSHKP--------SARERRLA 668
             +  S+E+L++++K+MLEK W   +    S +      +R  K         SAR+RR+ 
Sbjct: 111  LIGHSVEALLLLQKSMLEKSWNLSFEKAASSESSGKRTIRKKKVPVITCSGISARQRRIG 170

Query: 667  SRRKSTEGCYKG--DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYT--VLKREEV 500
            +++K+     K   DV +      K+ R ++ S +F          K   +  VL   EV
Sbjct: 171  AKKKTNMTSAKAVSDVSS-----GKQVRSVMSSELFQHNRVRGGYVKGVISEDVLSHTEV 225

Query: 499  TWLSQKIQCGLHLHRIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKM 320
              LS+KI+ GL L   + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L M
Sbjct: 226  VRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAISLKISRAELQAWLMECHLAREKLAM 285

Query: 319  SNVRLVLSIARKYENLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITR 140
            SNVRLV+SIA++Y+NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++R
Sbjct: 286  SNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSR 345

Query: 139  ALADHSKTTQGAGHMQERV 83
            AL D+S+T +   H+ ER+
Sbjct: 346  ALVDNSRTLRLPTHLHERL 364


>gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
          Length = 502

 Score =  209 bits (533), Expect = 1e-51
 Identities = 136/365 (37%), Positives = 203/365 (55%), Gaps = 19/365 (5%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTNA 956
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 955  RTR---KKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 785
            R       +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   RPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 784  EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 632
            +K+MLEK W          EY   G+  K+   V+     SAR+RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 177

Query: 631  --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 458
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHAEVVRLSKKIKSGLRLD 219

Query: 457  RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 278
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y+
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 279

Query: 277  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 98
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 97   MQERV 83
            + ER+
Sbjct: 340  LHERL 344


>gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  209 bits (532), Expect = 2e-51
 Identities = 134/359 (37%), Positives = 208/359 (57%), Gaps = 13/359 (3%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVS-KPFH--DQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G+S GKRLLN+SF + +++ K FH  D              +V ARK +N  +
Sbjct: 2    MATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCSS 61

Query: 949  RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKE-EDDNKHLQQSLESLMIMEKTM 773
            R     +  ++ R  +  V  A+A   A+ +      + E+++  L+ S+E+L++++K+M
Sbjct: 62   RFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKSM 121

Query: 772  LEKQW------EEYSNDGSEDKEASEVVRSHKPSARERRLASRRKST---EGCYKGDVMN 620
            LEKQW      +   +  S+  +    V     SAR+RR+ S ++ T     C      N
Sbjct: 122  LEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVMHPSTN 181

Query: 619  KILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRL 440
            K LR      +L +    + +G  +        +L   EV  LS+KI+ GL +   + RL
Sbjct: 182  KPLRAIVSPELLQNHVKGYVKGVLSED------LLTHTEVVRLSKKIKVGLSVEEHKSRL 235

Query: 439  KAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEI 260
            K +LG EPS  Q A S+ +S  +L +KL+E  +AR++L MSNVRLV+SIA++Y+N+G E+
Sbjct: 236  KERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEM 295

Query: 259  GDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERV 83
             DLI+ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER+
Sbjct: 296  ADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL 354


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  208 bits (530), Expect = 3e-51
 Identities = 138/361 (38%), Positives = 210/361 (58%), Gaps = 15/361 (4%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G+SAGKRLL++SF + ++S+ F   +D G S  + +     +V A+K +N   
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLG-SANSQVGSTKNVVAAKKSSNYNP 60

Query: 949  R---KKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEK 779
                  +  Q +KA ++       +TAE  A    S     E+++  L  S+E+L++++K
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSI----EEESSELDYSVEALLLLQK 116

Query: 778  TMLEKQWE-----EYSNDGSEDKEASEV-VRSHKPSARERRLASRRKSTEGCYKGDVMNK 617
            +MLEKQW          D    K   +V V     SAR+RRL S++K           NK
Sbjct: 117  SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS-------QNK 169

Query: 616  ILRR---NKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQ 446
             + +   +K+ R ++   +             +  +L   EV  LS+KI+ GL L   + 
Sbjct: 170  SVPQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229

Query: 445  RLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGL 266
            RLK +LG EPS  Q AAS+ +S  EL + LME S+AR++L MSNVRLV+SIA++Y+N+G 
Sbjct: 230  RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289

Query: 265  EIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQER 86
            ++ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER
Sbjct: 290  DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349

Query: 85   V 83
            +
Sbjct: 350  L 350


>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
            gi|557097090|gb|ESQ37598.1| hypothetical protein
            EUTSA_v10002486mg [Eutrema salsugineum]
          Length = 519

 Score =  208 bits (530), Expect = 3e-51
 Identities = 139/370 (37%), Positives = 213/370 (57%), Gaps = 24/370 (6%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTNA 956
            M+TAA++G++AGKRLL++SF + +V++ F     H      I +  R GI   A+K  ++
Sbjct: 2    MATAAVIGLNAGKRLLSSSFYYSDVTEKFLSVNDHCSSQYHIAST-RSGIT--AKKTPSS 58

Query: 955  RTR-------KKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKH---LQQS 806
             +          +H Q  KA ++   +V  +    +       SDKE +   +   L  S
Sbjct: 59   SSNYSPSLPSSSRHTQSAKALKETVDVVASSVQPWLPP----GSDKEMEGESYEDDLGHS 114

Query: 805  LESLMIMEKTMLEKQWEEYSNDG--SEDKEASEVVRSHKP------SARERRLASRRKST 650
            +E+L++++K+MLEKQW         SE      + R   P      SAR+RR+ +++K+ 
Sbjct: 115  VEALLLLQKSMLEKQWNLSFEKAATSESPSKKRMTRKKNPVTCSGISARQRRIGAKKKTN 174

Query: 649  EGCYKGDVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQ-TYTVLKREEVTWLSQKIQC 473
                K  V++++    K+ + +++S +F         R   +  VL   EV  LS+KI+ 
Sbjct: 175  MSHVK--VVSEV-SSGKQVKSVINSELFQNNRVKGYVRGVVSEDVLSHAEVVRLSKKIKS 231

Query: 472  GLHLHRIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSI 293
            GL L   + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SI
Sbjct: 232  GLRLDDHKSRLKDRLGCEPSDEQLAISLKISRGELQAWLMECHLAREKLAMSNVRLVMSI 291

Query: 292  ARKYENLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTT 113
            A++Y+N+G E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T 
Sbjct: 292  AQRYDNMGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTL 351

Query: 112  QGAGHMQERV 83
            +   H+ ER+
Sbjct: 352  RLPTHLHERL 361


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  208 bits (530), Expect = 3e-51
 Identities = 135/355 (38%), Positives = 206/355 (58%), Gaps = 9/355 (2%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF----HDQGMSTITTLPRYGIIVCARKVTNAR 953
            M TAA++G+SAG RLL +S  + +V++      +D G     + P   +I  A+K +N  
Sbjct: 73   MGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLI-SAKKPSNYT 131

Query: 952  TRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTM 773
                +  Q +KA ++    V  A+A   A  + S+S  E +D ++L   +E+ ++++K+M
Sbjct: 132  PSSNRSIQSMKALKEH---VESASAPSTADPDLSSSSSEVEDEEYL---VEAFLLLQKSM 185

Query: 772  LEKQWEEYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKGDVMNKILRRNKRQ 593
            LEKQW    N   + ++    V     SAR+RR++ R++         VMN+  +   R 
Sbjct: 186  LEKQW----NLSFKARQKRREVTCSGTSARQRRISGRKR---------VMNE--KSKSRV 230

Query: 592  RVLLHSSVFHGEGANNSSRKQTYTVLKRE-----EVTWLSQKIQCGLHLHRIRQRLKAKL 428
            R  L        G  N  +     V+  E     +V  LS KI+ GL L   + RLK ++
Sbjct: 231  RAAL--------GVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERI 282

Query: 427  GYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGDLI 248
            G EP+  Q AAS+ MS  EL +KL+E S+AR++L MSNVRLV+SIA++Y+N+G E+ DL+
Sbjct: 283  GSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 342

Query: 247  REGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERV 83
            + GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER+
Sbjct: 343  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERL 397


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Glycine
            max] gi|571478813|ref|XP_006587676.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Glycine
            max]
          Length = 503

 Score =  208 bits (529), Expect = 4e-51
 Identities = 132/361 (36%), Positives = 208/361 (57%), Gaps = 15/361 (4%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPFH---DQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G+S GKRLL++S+ + +V +      D G +    +P   +I   +      T
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60

Query: 949  --RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKT 776
                 +  Q +KA ++     P        S     S+  E ++  +  S+E+L++++K+
Sbjct: 61   FPASNQQNQSIKALKEHVDDAPTIADSWFQSCN---SNDLEVESSEMGYSVEALLLLQKS 117

Query: 775  MLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKST-EGCYKGDV 626
            MLEKQW          E+S+ G + K+ +  V     SAR+RR+ ++RK+  + C    +
Sbjct: 118  MLEKQWNLSFEREVLTEHSSKGKKCKKVA--VTCSGVSARQRRMNTKRKTAIKTCGAMQL 175

Query: 625  MNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQ 446
             +KI        +L H    + +G  +        +L   EV  LS++I+ GL L   + 
Sbjct: 176  KSKI-----SPELLQHRLKGYVKGIVSEE------LLSHAEVVNLSERIKVGLSLEEHKS 224

Query: 445  RLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGL 266
            RLK +LG EPS  Q A S+ +S  EL A+++E ++AR++L MSNVRLV+SIA+KY+NLG 
Sbjct: 225  RLKERLGCEPSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGA 284

Query: 265  EIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQER 86
            E+GDL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER
Sbjct: 285  EMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHER 344

Query: 85   V 83
            +
Sbjct: 345  L 345


>ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Populus trichocarpa]
            gi|550316904|gb|ERP49007.1| hypothetical protein
            POPTR_0019s06020g [Populus trichocarpa]
          Length = 451

 Score =  207 bits (528), Expect = 5e-51
 Identities = 132/357 (36%), Positives = 210/357 (58%), Gaps = 11/357 (3%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G+S+GKRLL++SF + ++++     +D G++   T     +IV A+K +N   
Sbjct: 2    MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIV-AKKSSNYGP 60

Query: 949  RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTML 770
                  +   + +  +  V  A+A    +      D  E+++  L  S+E+L++++K+ML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 769  EKQWE-----EYSNDGSEDKEASEV-VRSHKPSARERRLASRRKS-TEGCYKGDVMN-KI 614
            EKQW        S+D +  K   ++ V     SAR+RR+ +RRK+  +  +     + K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 613  LRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKA 434
            LR      +L +    + +G  +        VL   EV  LS+ I+ GL     + RLK 
Sbjct: 181  LRSVSSPDLLQNRLKGYVKGVVSDE------VLPHTEVVRLSRIIRAGLSFEDHKSRLKE 234

Query: 433  KLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGD 254
            +LG EPS  Q A S+ +S  +L +KL++ S+AR++L MSNVRLV+SIA+KY+N+G E+ D
Sbjct: 235  RLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMAD 294

Query: 253  LIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERV 83
            L++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H+ ER+
Sbjct: 295  LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERL 351


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  207 bits (528), Expect = 5e-51
 Identities = 132/357 (36%), Positives = 210/357 (58%), Gaps = 11/357 (3%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 950
            M+TAA++G+S+GKRLL++SF + ++++     +D G++   T     +IV A+K +N   
Sbjct: 2    MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIV-AKKSSNYGP 60

Query: 949  RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTML 770
                  +   + +  +  V  A+A    +      D  E+++  L  S+E+L++++K+ML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 769  EKQWE-----EYSNDGSEDKEASEV-VRSHKPSARERRLASRRKS-TEGCYKGDVMN-KI 614
            EKQW        S+D +  K   ++ V     SAR+RR+ +RRK+  +  +     + K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 613  LRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKA 434
            LR      +L +    + +G  +        VL   EV  LS+ I+ GL     + RLK 
Sbjct: 181  LRSVSSPDLLQNRLKGYVKGVVSDE------VLPHTEVVRLSRIIRAGLSFEDHKSRLKE 234

Query: 433  KLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGD 254
            +LG EPS  Q A S+ +S  +L +KL++ S+AR++L MSNVRLV+SIA+KY+N+G E+ D
Sbjct: 235  RLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMAD 294

Query: 253  LIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERV 83
            L++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H+ ER+
Sbjct: 295  LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERL 351


>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
            polymerase sigma factor sigA; Short=Sigma factor A;
            Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
            sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
            Full=RNA polymerase sigma factor sig2; Short=Atsig2;
            Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
            factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
            Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
            polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
            thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
            thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
            polymerase sigma factor [Arabidopsis thaliana]
            gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis
            thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma
            subunit 1 [Arabidopsis thaliana]
            gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1
            [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
            AT1G64860 [Arabidopsis thaliana]
            gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 502

 Score =  207 bits (527), Expect = 6e-51
 Identities = 135/365 (36%), Positives = 203/365 (55%), Gaps = 19/365 (5%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTN- 959
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 958  --ARTRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 785
              +     +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 784  EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 632
            +K+MLEK W          EY   G+  K+   V+     SAR+RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 177

Query: 631  --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 458
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHVEVVRLSKKIKSGLRLD 219

Query: 457  RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 278
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y+
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 279

Query: 277  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 98
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 97   MQERV 83
            + ER+
Sbjct: 340  LHERL 344


>ref|NP_001185314.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|332196178|gb|AEE34299.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 498

 Score =  207 bits (527), Expect = 6e-51
 Identities = 135/365 (36%), Positives = 203/365 (55%), Gaps = 19/365 (5%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTN- 959
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 958  --ARTRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 785
              +     +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 784  EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 632
            +K+MLEK W          EY   G+  K+   V+     SAR+RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 177

Query: 631  --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 458
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHVEVVRLSKKIKSGLRLD 219

Query: 457  RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 278
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y+
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 279

Query: 277  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 98
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 97   MQERV 83
            + ER+
Sbjct: 340  LHERL 344


>gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
          Length = 502

 Score =  206 bits (525), Expect = 1e-50
 Identities = 135/365 (36%), Positives = 202/365 (55%), Gaps = 19/365 (5%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTN- 959
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 958  --ARTRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 785
              +     +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 784  EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 632
            +K+MLEK W          EY   G+  K+   V+     SAR+RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 177

Query: 631  --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 458
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHVEVVRLSKKIKSGLRLD 219

Query: 457  RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 278
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y 
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYN 279

Query: 277  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 98
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 97   MQERV 83
            + ER+
Sbjct: 340  LHERL 344


>dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 502

 Score =  206 bits (524), Expect = 1e-50
 Identities = 135/365 (36%), Positives = 202/365 (55%), Gaps = 19/365 (5%)
 Frame = -2

Query: 1120 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTN- 959
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 958  --ARTRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 785
              +     +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 784  EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 632
            +K+MLEK W          EY   G+  K+   V+     SAR RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARPRRIGAKKKTNMTHVKA 177

Query: 631  --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 458
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHVEVVRLSKKIKSGLRLD 219

Query: 457  RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 278
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y+
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 279

Query: 277  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 98
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 97   MQERV 83
            + ER+
Sbjct: 340  LHERL 344