BLASTX nr result
ID: Ephedra28_contig00014743
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00014743
(2931 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002963163.1| hypothetical protein SELMODRAFT_141493 [Sela... 122 9e-25
ref|XP_002981625.1| hypothetical protein SELMODRAFT_114787 [Sela... 120 5e-24
ref|XP_006280119.1| hypothetical protein CARUB_v10026014mg, part... 110 4e-21
ref|XP_002866409.1| hypothetical protein ARALYDRAFT_496254 [Arab... 108 2e-20
ref|XP_004301112.1| PREDICTED: replication protein A 70 kDa DNA-... 106 7e-20
ref|XP_004985197.1| PREDICTED: replication protein A 70 kDa DNA-... 105 9e-20
dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea... 105 9e-20
ref|XP_004169647.1| PREDICTED: replication protein A 70 kDa DNA-... 105 1e-19
ref|XP_004138198.1| PREDICTED: replication protein A 70 kDa DNA-... 105 1e-19
ref|NP_200908.1| replication protein A 70 kDa DNA-binding subuni... 105 1e-19
ref|XP_006287282.1| hypothetical protein CARUB_v10000503mg [Caps... 105 2e-19
ref|XP_002871302.1| hypothetical protein ARALYDRAFT_325405 [Arab... 105 2e-19
gb|EOY22080.1| Replication protein A 70 kDa DNA-binding subunit ... 104 2e-19
ref|NP_196419.1| RPA70-kDa subunit B [Arabidopsis thaliana] gi|7... 103 3e-19
gb|EMJ12078.1| hypothetical protein PRUPE_ppa003038mg [Prunus pe... 103 6e-19
ref|NP_001141474.1| Replication protein A DNA-binding subunit [Z... 103 6e-19
gb|EXC04889.1| Replication factor A protein 1 [Morus notabilis] 102 7e-19
ref|XP_006399289.1| hypothetical protein EUTSA_v10013014mg [Eutr... 102 7e-19
ref|XP_002468278.1| hypothetical protein SORBIDRAFT_01g042890 [S... 102 7e-19
ref|XP_004236053.1| PREDICTED: replication protein A 70 kDa DNA-... 102 1e-18
>ref|XP_002963163.1| hypothetical protein SELMODRAFT_141493 [Selaginella moellendorffii]
gi|300168431|gb|EFJ35034.1| hypothetical protein
SELMODRAFT_141493 [Selaginella moellendorffii]
Length = 566
Score = 122 bits (306), Expect = 9e-25
Identities = 82/254 (32%), Positives = 127/254 (50%), Gaps = 7/254 (2%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L D GIV VS ++ + +R+I LVD+S+ +V LW SLA + L E
Sbjct: 261 LFDAIGIVQSVSSTMSVRRKVDNTEFAKREIVLVDQSQKTVAVSLWSSLAVEDGAKLLEM 320
Query: 2247 FKTNPGAPFMLALRNVRCTDF-AHLSIQSIDKTRVFIDPSIPETASLKQWFSQLCHSRP- 2420
P AP ++ +R+VR DF A +S+ + + V+I+P IPE L+ W+ +
Sbjct: 321 L---PDAP-VVVIRSVRANDFQAGVSLSTSPNSMVWINPDIPEARELRSWYDESGKDATL 376
Query: 2421 -SMGFVSATRFPPKTITLSEIHEERRTT----EEASFLVSAVVSNFDMQRPQWYTACVLC 2585
S+G + R P ++I + + + A F V A +S + WYTAC C
Sbjct: 377 TSVGAGLSQRAGPTNDNRADISDITAPSVGEGKAAYFTVRACISYIKPDQTMWYTACSTC 436
Query: 2586 KKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTAEQLL 2765
+K ++ + +++C AC DT + Y + KL D + D WV+ FND AEQ+L
Sbjct: 437 NRKVSE-------DSSRFWCEACQRHFDTASRRYIMLAKLTDHSGDAWVSFFNDQAEQIL 489
Query: 2766 GVKASDLATLMETD 2807
GV A +LAT+ D
Sbjct: 490 GVSADELATIKSQD 503
>ref|XP_002981625.1| hypothetical protein SELMODRAFT_114787 [Selaginella moellendorffii]
gi|300150791|gb|EFJ17440.1| hypothetical protein
SELMODRAFT_114787 [Selaginella moellendorffii]
Length = 566
Score = 120 bits (300), Expect = 5e-24
Identities = 82/258 (31%), Positives = 123/258 (47%), Gaps = 11/258 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L D GIV VS ++ + +R+I LVD+S+ +V LW SLA + L E
Sbjct: 261 LFDAIGIVQSVSSTMSVRRKVDNTEFAKREIVLVDQSQKTVAVSLWSSLAVEDGAKLLEM 320
Query: 2247 FKTNPGAPFMLALRNVRCTDF-AHLSIQSIDKTRVFIDPSIPETASLKQWFSQLCHSRP- 2420
P AP ++ +R+VR DF A +S+ + + V+I+P IPE L+ W+ +
Sbjct: 321 L---PDAP-VVVIRSVRANDFQAGVSLSTSPNSMVWINPDIPEARELRSWYDESGKDATL 376
Query: 2421 ---------SMGFVSATRFPPKTITLSEIHEERRTTEEASFLVSAVVSNFDMQRPQWYTA 2573
G + R IT + E + A F V A +S + WYTA
Sbjct: 377 TSVGAGLSQRAGSANDNRADISDITAPSVGEGKA----AYFTVRACISYIKPDQTMWYTA 432
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C +K ++ + +++C AC DT + Y + KL D + D WV+ FND A
Sbjct: 433 CSTCNRKVSE-------DSSRFWCEACQRHFDTASRRYIMLAKLTDHSGDAWVSFFNDQA 485
Query: 2754 EQLLGVKASDLATLMETD 2807
EQ+LGV A +LAT+ D
Sbjct: 486 EQILGVSADELATIKSQD 503
>ref|XP_006280119.1| hypothetical protein CARUB_v10026014mg, partial [Capsella rubella]
gi|482548823|gb|EOA13017.1| hypothetical protein
CARUB_v10026014mg, partial [Capsella rubella]
Length = 680
Score = 110 bits (275), Expect = 4e-21
Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 19/324 (5%)
Frame = +3
Query: 1995 ASISLMHV*VSHYIFFPIILLAI-----SLSDVHGIVLQVSDIHPIKNRNTQQLSFRRQI 2159
AS M + + + F PI L + L D+ G+V VS I+ R ++ +R I
Sbjct: 338 ASSEEMFIPETKFNFIPIEDLGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDI 397
Query: 2160 RLVDRSKFSVNAFLWGSLATSETLPLYERFKTNPGAPFMLALRNVRCTDFAHLSIQSIDK 2339
L D SK +V LW LAT L + +P ++A+++++ DF +S+ +I +
Sbjct: 398 TLADESKKTVVVSLWNDLATGIGQELLDMADKSP----VIAIKSLKVGDFQGVSLSTISR 453
Query: 2340 TRVFIDPSIPETASLKQWFS----QLCHSRPSMGFVSATRFPPKT-----ITLSEIHEER 2492
+ V I+P PE LK WF ++ S G AT+ ++ + LS I
Sbjct: 454 SNVVINPVSPEAKKLKSWFDSEGKEISMSSIGSGMSPATKNGSRSMYTDRVLLSHITSNP 513
Query: 2493 RTTEEAS--FLVSAVVSNFDMQRPQWYTACVLCKKKYNKPDGPSKGEQQKYFCYACTNTS 2666
EE F A VS + WY AC C KK ++ Y+C C
Sbjct: 514 SLGEEKPVFFSTRAYVSFIKPDQTMWYQACKTCNKKV------TEALDSGYWCEGCQKKY 567
Query: 2667 DTTTLCYNLRLKLQDDNSDLWVTVFNDTAEQLLGVKASDLATLMETDLPAYEDVYYKSRF 2846
+ +L Y + +K+ D + + W++ FND AE++LG A +L L + E Y++R
Sbjct: 568 EECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLRSEEGEVNE---YQTRL 624
Query: 2847 QAI--NTHVI-INVTPFEERDHKQ 2909
+ ++HV ++VT E K+
Sbjct: 625 KEATWSSHVFRVSVTQNEYNGEKR 648
>ref|XP_002866409.1| hypothetical protein ARALYDRAFT_496254 [Arabidopsis lyrata subsp.
lyrata] gi|297312244|gb|EFH42668.1| hypothetical protein
ARALYDRAFT_496254 [Arabidopsis lyrata subsp. lyrata]
Length = 631
Score = 108 bits (269), Expect = 2e-20
Identities = 79/283 (27%), Positives = 129/283 (45%), Gaps = 16/283 (5%)
Frame = +3
Query: 1995 ASISLMHV*VSHYIFFPIILLAI-----SLSDVHGIVLQVSDIHPIKNRNTQQLSFRRQI 2159
AS M + + + F PI L + L D+ G+V VS I+ R ++ +R I
Sbjct: 289 ASSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDI 348
Query: 2160 RLVDRSKFSVNAFLWGSLATSETLPLYERFKTNPGAPFMLALRNVRCTDFAHLSIQSIDK 2339
L D SK +V LW LAT L + +P ++A+++++ DF +S+ +I +
Sbjct: 349 TLADESKKTVVVSLWNDLATGIGQELLDMADKSP----VVAIKSLKVGDFQGVSLSTISR 404
Query: 2340 TRVFIDPSIPETASLKQWFS----QLCHSRPSMGFVSATRFPPKT-----ITLSEIHEER 2492
+ V I+P PE LK WF ++ S G +++ ++ + LS I
Sbjct: 405 SNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSSKNGSRSMYTDRVLLSHITSNP 464
Query: 2493 RTTEEAS--FLVSAVVSNFDMQRPQWYTACVLCKKKYNKPDGPSKGEQQKYFCYACTNTS 2666
EE F A +S + WY AC C KK ++ Y+C C
Sbjct: 465 SLGEEKPVFFSTRAYISFIKPDQTMWYQACKTCNKKV------TEALDSGYWCEGCQKKY 518
Query: 2667 DTTTLCYNLRLKLQDDNSDLWVTVFNDTAEQLLGVKASDLATL 2795
+ +L Y + +K+ D + + W++ FND AE++LG A DL L
Sbjct: 519 EECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADDLNKL 561
>ref|XP_004301112.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Fragaria vesca subsp. vesca]
Length = 606
Score = 106 bits (264), Expect = 7e-20
Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 12/264 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ ++ + +R I + D SK V LW LAT L ++
Sbjct: 298 LVDVIGVVTSVSPTMSIRRKSNNESIPKRDITIADESKKVVVVSLWNDLATGVGQELLDK 357
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFSQLCHSRPSM 2426
+P ++A+++VR D+ +S+ ++ K+ + +DP +PE LK W+ SM
Sbjct: 358 VNQSP----VVAIKSVRVGDYQGVSLSTVSKSSIVVDPDLPEAKRLKSWYDSE-GKEVSM 412
Query: 2427 GFVSATRFPPKT----------ITLSEIHEERRTTEE--ASFLVSAVVSNFDMQRPQWYT 2570
V + P I LS + + E+ F V A + + WY
Sbjct: 413 ASVGSGMSPSANSGAWSMYSDRIPLSHLKDNPSLGEDKPVFFSVKAYIGPIKSDQTLWYR 472
Query: 2571 ACVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDT 2750
AC +C KK + DG Y+C C ++ +L Y L + D ++++++FN+
Sbjct: 473 ACKVCNKKVTEGDG-------GYWCEGCQKIAEECSLRYILLARAMDATGEVYLSMFNNE 525
Query: 2751 AEQLLGVKASDLATLMETDLPAYE 2822
AE+++G A +L L + Y+
Sbjct: 526 AEKIIGCSADELDKLRSEEDNEYQ 549
>ref|XP_004985197.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Setaria italica]
Length = 623
Score = 105 bits (263), Expect = 9e-20
Identities = 67/251 (26%), Positives = 121/251 (48%), Gaps = 11/251 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L D+ G+V VS I+ + + +R I + D S +V+ LW LAT+ L +
Sbjct: 313 LVDIVGVVQSVSPTMSIRRKLDNETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLDM 372
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWF------SQLC 2408
++P ++A+R++R +DF +S+ ++ K+ + ++P +PE +LK W+ + +
Sbjct: 373 VDSSP----IIAIRSLRVSDFQGVSLSTVGKSTLMVNPDLPEVHNLKSWYDNEGKGTSMA 428
Query: 2409 HSRPSMGFVSA---TRFPPKTITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
MG A + LS I + +E F ++A++S+ + WY A
Sbjct: 429 PIGADMGAARAGGLRSMYSDRVFLSHITSDPNMGQEKPVFFSLNAIISHIKPDQNMWYRA 488
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C C +L Y + +K+ D + WV+VFN+ A
Sbjct: 489 CKTCNKKVTEAVGGG------YWCEGCNKNDAECSLRYIMVIKVSDPTGEAWVSVFNEHA 542
Query: 2754 EQLLGVKASDL 2786
E+++G A +L
Sbjct: 543 ERIIGCSADEL 553
>dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea nil]
Length = 604
Score = 105 bits (263), Expect = 9e-20
Identities = 68/260 (26%), Positives = 122/260 (46%), Gaps = 13/260 (5%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ ++ ++ +R I + D +K +V LW LAT+ L +
Sbjct: 292 LVDVIGVVQNVSSTMSIRRKSNNEMIPKRDITIADETKKTVVVSLWSDLATNVGQELLDM 351
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFSQLCHSRPSM 2426
+P ++A+R+V+ DF LS+ +I ++ V ++P +PE L+ W+ C + +
Sbjct: 352 ADKSP----VVAIRSVKVGDFQGLSLSAITRSTVLVNPDMPEAKKLRSWYD--CEGKETS 405
Query: 2427 ------GFVSATR-----FPPKTITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWY 2567
G S+ + ++L I E+ F + A +S ++ WY
Sbjct: 406 LTSVGSGLSSSAKGVLWSMYSDRVSLLHITSNPNLGEDKPVFFSIKANISFIKPEQAMWY 465
Query: 2568 TACVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFND 2747
AC C KK + G Y+C C +L Y + +++ D + + W++VFN+
Sbjct: 466 RACKTCNKKVTEAIGSG------YWCEGCQKNDTDCSLRYIVAMRVSDTSGEAWLSVFNE 519
Query: 2748 TAEQLLGVKASDLATLMETD 2807
AE+++G A +L L D
Sbjct: 520 QAEKIIGCSADELDRLRSQD 539
>ref|XP_004169647.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 560
Score = 105 bits (262), Expect = 1e-19
Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 11/254 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ + + + +R + + D +K +V LW LAT+ L +
Sbjct: 249 LVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDI 308
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFSQ----LCHS 2414
+P ++AL+ +R DF +S+ +I ++ + I+P I E L+ W+ + S
Sbjct: 309 ADQSP----IIALKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDSEGKAVSMS 364
Query: 2415 RPSMGFVSATRFPPKT-----ITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
S G +T+ ++ I+LS I E + EE F + A VS + WY A
Sbjct: 365 SVSSGLSPSTKSGSRSMYSDRISLSHILENKSLGEEKPTFFSIRAYVSFIKPDQTMWYRA 424
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C C + +L Y + +++ D + + WV+ FN+ A
Sbjct: 425 CKTCNKKVTEAIGSG------YWCDNCQKNDEECSLRYIMVVRVSDASGEAWVSTFNEEA 478
Query: 2754 EQLLGVKASDLATL 2795
E+++G A +L L
Sbjct: 479 ERIMGCSADELDQL 492
>ref|XP_004138198.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 603
Score = 105 bits (262), Expect = 1e-19
Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 11/254 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ + + + +R + + D +K +V LW LAT+ L +
Sbjct: 292 LVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDI 351
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFSQ----LCHS 2414
+P ++AL+ +R DF +S+ +I ++ + I+P I E L+ W+ + S
Sbjct: 352 ADQSP----IIALKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDSEGKAVSMS 407
Query: 2415 RPSMGFVSATRFPPKT-----ITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
S G +T+ ++ I+LS I E + EE F + A VS + WY A
Sbjct: 408 SVSSGLSPSTKSGSRSMYSDRISLSHILENKSLGEEKPTFFSIRAYVSFIKPDQTMWYRA 467
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C C + +L Y + +++ D + + WV+ FN+ A
Sbjct: 468 CKTCNKKVTEAIGSG------YWCDNCQKNDEECSLRYIMVVRVSDASGEAWVSTFNEEA 521
Query: 2754 EQLLGVKASDLATL 2795
E+++G A +L L
Sbjct: 522 ERIMGCSADELDQL 535
>ref|NP_200908.1| replication protein A 70 kDa DNA-binding subunit D [Arabidopsis
thaliana] gi|75171651|sp|Q9FME0.1|RFA1D_ARATH RecName:
Full=Replication protein A 70 kDa DNA-binding subunit D;
Short=AtRPA70D; AltName: Full=AtRPA1-4; AltName:
Full=Replication factor A protein 1D; AltName:
Full=Replication protein A 1D; Short=AtRPA1D
gi|10177323|dbj|BAB10649.1| replication protein A1
[Arabidopsis thaliana] gi|28393124|gb|AAO41995.1|
putative RNA helicase [Arabidopsis thaliana]
gi|332010026|gb|AED97409.1| Replication factor-A protein
1-like protein [Arabidopsis thaliana]
Length = 629
Score = 105 bits (262), Expect = 1e-19
Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 16/283 (5%)
Frame = +3
Query: 1995 ASISLMHV*VSHYIFFPIILLAI-----SLSDVHGIVLQVSDIHPIKNRNTQQLSFRRQI 2159
AS M + + + F PI L + L D+ G+V VS I+ R ++ +R I
Sbjct: 287 ASSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDI 346
Query: 2160 RLVDRSKFSVNAFLWGSLATSETLPLYERFKTNPGAPFMLALRNVRCTDFAHLSIQSIDK 2339
L D S+ +V LW LAT L + +P ++A+++++ DF +S+ +I +
Sbjct: 347 TLADESRKTVVVSLWNDLATGIGQELLDMADQSP----VIAIKSLKVGDFQGVSLSTISR 402
Query: 2340 TRVFIDPSIPETASLKQWFS----QLCHSRPSMGFVSATRFPPKT-----ITLSEIHEER 2492
+ V I+P PE LK WF ++ S G + + ++ + LS I
Sbjct: 403 SNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNP 462
Query: 2493 RTTEEAS--FLVSAVVSNFDMQRPQWYTACVLCKKKYNKPDGPSKGEQQKYFCYACTNTS 2666
EE F A +S + WY AC C KK ++ Y+C C
Sbjct: 463 SLFEEKPVFFSTRAYISFIKPDQTMWYQACKTCNKKV------TEALDSGYWCEGCQRKY 516
Query: 2667 DTTTLCYNLRLKLQDDNSDLWVTVFNDTAEQLLGVKASDLATL 2795
+ +L Y + +K+ D + + W++ FND AE++LG A +L L
Sbjct: 517 EECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKL 559
>ref|XP_006287282.1| hypothetical protein CARUB_v10000503mg [Capsella rubella]
gi|482555988|gb|EOA20180.1| hypothetical protein
CARUB_v10000503mg [Capsella rubella]
Length = 607
Score = 105 bits (261), Expect = 2e-19
Identities = 70/254 (27%), Positives = 116/254 (45%), Gaps = 11/254 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ +N ++ +R I L D +K +V LW LAT L +
Sbjct: 295 LIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIGQELLDM 354
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFS----QLCHS 2414
+P ++A+++++ DF +S+ +I ++ V I+P PE LK W+ + S
Sbjct: 355 ADNHP----VIAIKSLKVGDFQGVSLSTISRSSVVINPDSPEATKLKSWYDSEGKETSMS 410
Query: 2415 RPSMGFVSATRFPPKT-----ITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
G S+ ++ ++LS I+ EE F A +S + WY A
Sbjct: 411 TIGSGMSSSANNGSRSMYSDRVSLSHINSNPSLGEEKPVFFSTRAYISFIKPDQTMWYRA 470
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK ++ Y+C C +L Y + +K+ D + W + FND A
Sbjct: 471 CKTCNKKV------TEAMDSGYWCEGCQKKDQECSLRYIMAVKVSDSMGETWFSAFNDEA 524
Query: 2754 EQLLGVKASDLATL 2795
E+++G A +L L
Sbjct: 525 EKIIGCTADELNIL 538
>ref|XP_002871302.1| hypothetical protein ARALYDRAFT_325405 [Arabidopsis lyrata subsp.
lyrata] gi|297317139|gb|EFH47561.1| hypothetical protein
ARALYDRAFT_325405 [Arabidopsis lyrata subsp. lyrata]
Length = 604
Score = 105 bits (261), Expect = 2e-19
Identities = 71/254 (27%), Positives = 115/254 (45%), Gaps = 11/254 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ +N ++ +R I L D SK +V LW LAT L +
Sbjct: 292 LIDVIGVVQCVSPTMSIRRKNDNEMIPKRDITLADESKNTVVVSLWNDLATGIGQELLDM 351
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFS----QLCHS 2414
+P ++A+++++ DF +S+ +I ++ V I+P PE LK W+ + S
Sbjct: 352 ADNHP----VIAIKSLKVGDFQGVSLSTISRSNVVINPDSPEAKKLKSWYDAEGKETSMS 407
Query: 2415 RPSMGFVSATRFPPKT-----ITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
G S+ ++ + LS I EE F + A +S + WY A
Sbjct: 408 AIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSIRAYISFIKPDQTMWYRA 467
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK ++ Y+C C +L Y + +K+ D + W + FND A
Sbjct: 468 CKTCNKKV------TEAMDSGYWCEGCQKKDQECSLRYIMAVKVSDSTGETWFSAFNDEA 521
Query: 2754 EQLLGVKASDLATL 2795
E+++G A +L L
Sbjct: 522 EKIIGCTADELNNL 535
>gb|EOY22080.1| Replication protein A 70 kDa DNA-binding subunit [Theobroma cacao]
Length = 677
Score = 104 bits (260), Expect = 2e-19
Identities = 70/265 (26%), Positives = 129/265 (48%), Gaps = 13/265 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L D+ G+V V+ + IK + + +R + + D +K +V LW LA + L++
Sbjct: 366 LVDIIGVVQSVTSVSNIKRKIDNENISKRDMTVADETKRTVVVSLWNELANNAGQELFDI 425
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFSQLCHSRPSM 2426
+P ++A+++++ +DF +S+ ++ K+ + I+P +PE +L+ W+ SM
Sbjct: 426 ADKSP----IVAIKSLKVSDFQGVSLSTLGKSTLLINPDMPEAKNLRSWYDSEGKGS-SM 480
Query: 2427 GFVSATRFPPKT---------ITLSEIHEERRTTEE--ASFLVSAVVSNFDMQRPQWYTA 2573
V + P K+ ++LS I EE A F + A +S ++ WY A
Sbjct: 481 ASVGSGLSPSKSGARSMYTDRVSLSHITGNPSLGEEKPAFFSIKAFISLIRPEQAMWYRA 540
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C C + +L Y + K+ D + + WV+ FN+ A
Sbjct: 541 CKSCNKKVTEAVGSG------YWCEGCQKNDEECSLRYIMVSKISDASGEAWVSGFNEEA 594
Query: 2754 EQLLGVKASDLATL--METDLPAYE 2822
E+++G A +L L E ++ AY+
Sbjct: 595 ERIVGCPADELDKLKSKEGEMNAYQ 619
>ref|NP_196419.1| RPA70-kDa subunit B [Arabidopsis thaliana]
gi|75337075|sp|Q9SD82.1|RFA1B_ARATH RecName:
Full=Replication protein A 70 kDa DNA-binding subunit B;
Short=AtRPA70B; AltName: Full=AtRPA1-5; AltName:
Full=Replication factor A protein 1B; AltName:
Full=Replication protein A 1B; Short=AtRPA1B
gi|6562316|emb|CAB62614.1| replication factor A-like
protein [Arabidopsis thaliana]
gi|332003852|gb|AED91235.1| RPA70-kDa subunit B
[Arabidopsis thaliana]
Length = 604
Score = 103 bits (258), Expect = 3e-19
Identities = 70/254 (27%), Positives = 116/254 (45%), Gaps = 11/254 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ +N ++ +R I L D +K +V LW LAT L +
Sbjct: 292 LIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIGQELLDM 351
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFS----QLCHS 2414
+P ++A+++++ F +S+ +I ++ V I+P+ PE LK W+ + S
Sbjct: 352 ADNHP----VIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDAEGKETSMS 407
Query: 2415 RPSMGFVSATRFPPKT-----ITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
G S+ ++ + LS I EE F A +S + WY A
Sbjct: 408 AIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAYISFIKPDQTMWYRA 467
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK ++ Y+C +C +L Y + +K+ D + W++ FND A
Sbjct: 468 CKTCNKKV------TEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEA 521
Query: 2754 EQLLGVKASDLATL 2795
E+++G A DL L
Sbjct: 522 EKIIGCTADDLNDL 535
>gb|EMJ12078.1| hypothetical protein PRUPE_ppa003038mg [Prunus persica]
Length = 609
Score = 103 bits (256), Expect = 6e-19
Identities = 70/273 (25%), Positives = 130/273 (47%), Gaps = 11/273 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ ++ + +R I + D +K +V LWG LATS L +
Sbjct: 297 LVDVIGVVQSVSPTMSIRRKSNNESIPKRDITIADETKKTVVVSLWGELATSVGQELLDI 356
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWF---------S 2399
+P ++A+++++ DF +S+ ++ ++ V ++P +PE L+ W+ +
Sbjct: 357 ADQSP----IVAIKSLKVGDFQGVSLSTLSRSTVVVNPELPEAKRLRSWYDSEGKGASLA 412
Query: 2400 QLCHSRPSMGFVSATRFPPKTITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
+ + + A ++LS I ++ E+ F V A +S+ + WY A
Sbjct: 413 SVGNGMSPLAKSGARSMYSDRVSLSHISDDPSLGEDKPVFFSVKAFISSIRPDQALWYRA 472
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C AC + +L Y L ++ D + + ++++FN+ A
Sbjct: 473 CKTCNKKVTEAIGSG------YWCEACQKNDEECSLRYILVARVTDASGEAYLSLFNEEA 526
Query: 2754 EQLLGVKASDLATLMETDLPAYEDVYYKSRFQA 2852
E+++G A +L L + E+VY QA
Sbjct: 527 ERVIGCSADELDKLKSQE--GEENVYQLKLKQA 557
>ref|NP_001141474.1| Replication protein A DNA-binding subunit [Zea mays]
gi|194704722|gb|ACF86445.1| unknown [Zea mays]
gi|195647462|gb|ACG43199.1| replication protein A 70 kDa
DNA-binding subunit [Zea mays]
gi|413956552|gb|AFW89201.1| Replication protein A
DNA-binding subunit [Zea mays]
Length = 623
Score = 103 bits (256), Expect = 6e-19
Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 11/251 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L D+ G+V VS ++ + + +R I + D S +V LW LAT+ L +
Sbjct: 313 LVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDM 372
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFSQLCHSR--- 2417
++P ++A+++++ +DF +S+ +I ++ + I+P +PE +LK W+
Sbjct: 373 VDSSP----VVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLA 428
Query: 2418 PSMGFVSATR------FPPKTITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
P V ATR + LS I + +E F + A++S+ + WY A
Sbjct: 429 PISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRA 488
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C C +L Y + +KL D + WV+VFN+ A
Sbjct: 489 CTTCNKKVTEAFGSG------YWCEGCQKNYSECSLRYIMVIKLSDPTGEAWVSVFNEHA 542
Query: 2754 EQLLGVKASDL 2786
E+++G A +L
Sbjct: 543 EKIIGCSADEL 553
>gb|EXC04889.1| Replication factor A protein 1 [Morus notabilis]
Length = 628
Score = 102 bits (255), Expect = 7e-19
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 11/254 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ ++ + +R I + D SK +V LW LAT+ L +
Sbjct: 317 LVDVIGVVQSVSPTMSIRRKSNNENIPKRDITIADESKKTVVVSLWNDLATNVGQELLDI 376
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFSQLCHSRP-- 2420
+P ++A+++V+ DF LS+ ++ ++ V ++P PE LK W+ P
Sbjct: 377 ADQSP----VVAIKSVKVGDFQGLSLSALSRSMVVVNPDTPEANKLKSWYDSEGKGSPMA 432
Query: 2421 --SMGFVSATRFPPKT-----ITLSEIHEERRTTEE--ASFLVSAVVSNFDMQRPQWYTA 2573
G +TR ++ + LS I + E+ A F + +S+ + WY A
Sbjct: 433 SVGTGMSPSTRSGGRSMYSDRVFLSHITDNPSLGEDKPAFFSIRGYISSIKPDQTMWYRA 492
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C C + +L Y L +++ D + + +++ FN+ A
Sbjct: 493 CKTCNKKVTEAIGSG------YWCEGCQKNDEECSLRYILVVRVSDASGEAYISAFNEEA 546
Query: 2754 EQLLGVKASDLATL 2795
E ++G A +L L
Sbjct: 547 ESIIGCSADELDKL 560
>ref|XP_006399289.1| hypothetical protein EUTSA_v10013014mg [Eutrema salsugineum]
gi|557100379|gb|ESQ40742.1| hypothetical protein
EUTSA_v10013014mg [Eutrema salsugineum]
Length = 605
Score = 102 bits (255), Expect = 7e-19
Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 12/293 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ +N ++ +R I L D +K +V LW LAT L +
Sbjct: 292 LIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGLGQELLDM 351
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFS----QLCHS 2414
P ++A+++++ DF +S+ ++ ++ V I+P PE A LK W+ + S
Sbjct: 352 ADNYP----IIAIKSLKVGDFQGVSLSTVSRSNVVINPDSPEAAKLKSWYDSEGKETSMS 407
Query: 2415 RPSMGFVSATRFPPKT-----ITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
G S+ ++ + LS EE F A +S + WY A
Sbjct: 408 TIGSGISSSANNGSRSMYSDRVCLSHFTSNPSLGEEKPVFFSTRAYISFIKPDQTMWYRA 467
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK ++ Y+C C + +L Y + +K D + W FND A
Sbjct: 468 CKTCNKKV------TEAMDSGYWCEGCQKKDEECSLRYIMAVKASDSTGEAWCFAFNDEA 521
Query: 2754 EQLLGVKASDLATLMETDLPAYEDVYYKSRFQAINTHVI-INVTPFEERDHKQ 2909
E+++G A +L L ++ + K + ++H+ ++V+ E K+
Sbjct: 522 EKIIGCTADELNKLKSSEEGEANEFQTKLKEATWSSHLFRVSVSKQEYNSEKR 574
>ref|XP_002468278.1| hypothetical protein SORBIDRAFT_01g042890 [Sorghum bicolor]
gi|241922132|gb|EER95276.1| hypothetical protein
SORBIDRAFT_01g042890 [Sorghum bicolor]
Length = 623
Score = 102 bits (255), Expect = 7e-19
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 11/251 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L D+ G+V VS ++ + + +R I + D S +V+ LW LAT+ L +
Sbjct: 313 LVDIIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLDM 372
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWF------SQLC 2408
++P ++A+++++ +DF +S+ +I ++ + I+P +PE ++K W+ + L
Sbjct: 373 VDSSP----VVAIKSLKVSDFQGVSLSTIGRSTLAINPDLPEAQNVKSWYDSEGKDTSLA 428
Query: 2409 HSRPSMGFVSATRFPPK---TITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
MG A + LS I + +E F ++A++S+ + WY A
Sbjct: 429 PIGAEMGAARAGGLKSMYSDRVFLSHITSDPAMGQEKPVFFSLNAIISHIKPDQNMWYRA 488
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C C +L Y + LK+ D + WV+VFN+ A
Sbjct: 489 CKTCNKKVTEAFGSG------YWCEGCQKNDSECSLRYIMVLKISDPTGEAWVSVFNEHA 542
Query: 2754 EQLLGVKASDL 2786
E+++G A +L
Sbjct: 543 EKIIGCSADEL 553
>ref|XP_004236053.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Solanum lycopersicum]
Length = 614
Score = 102 bits (254), Expect = 1e-18
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 11/254 (4%)
Frame = +3
Query: 2067 LSDVHGIVLQVSDIHPIKNRNTQQLSFRRQIRLVDRSKFSVNAFLWGSLATSETLPLYER 2246
L DV G+V VS I+ ++ + +R I + D +K +V LW LAT L +
Sbjct: 303 LVDVIGVVQSVSPTMSIRRKSNNETVPKRDITIADETKKTVVVSLWNDLATHVGQELLDM 362
Query: 2247 FKTNPGAPFMLALRNVRCTDFAHLSIQSIDKTRVFIDPSIPETASLKQWFS----QLCHS 2414
+P ++A+++++ DF LS+ ++ K+ + ++P +PE L+ W+ + +
Sbjct: 363 ADKSP----VVAIKSLKVGDFQGLSLSALSKSNIVVNPDLPEAKKLRSWYDSEGKETSLA 418
Query: 2415 RPSMGFVSATRFPPKT-----ITLSEIHEERRTTEEAS--FLVSAVVSNFDMQRPQWYTA 2573
G +T+ ++ ++L I EE F + A +S + WY A
Sbjct: 419 SIGSGMSPSTKSGARSMYTDRVSLLHITSNLSLGEEKPVFFSLKAYISFIKPDQTMWYRA 478
Query: 2574 CVLCKKKYNKPDGPSKGEQQKYFCYACTNTSDTTTLCYNLRLKLQDDNSDLWVTVFNDTA 2753
C C KK + G Y+C C +L Y + L++ D + + W++ FND A
Sbjct: 479 CKTCNKKVTEAFGSG------YWCEGCQKNDAECSLRYIMALRVSDASGEAWLSTFNDQA 532
Query: 2754 EQLLGVKASDLATL 2795
E++LG A +L L
Sbjct: 533 EKILGCSADELDKL 546