BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00014382
         (495 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_192594.2| DNA-directed RNA polymerase II protein [Arabido...    62   6e-08
emb|CAB77979.1| hypothetical protein [Arabidopsis thaliana]            62   6e-08
gb|AAL59980.1| unknown protein [Arabidopsis thaliana]                  62   6e-08
ref|XP_001779720.1| predicted protein [Physcomitrella patens] gi...    59   7e-07
gb|EOY16121.1| DNA-directed RNA polymerase II protein isoform 2 ...    57   3e-06
gb|EOY16120.1| DNA-directed RNA polymerase II protein isoform 1 ...    57   3e-06
ref|XP_004237862.1| PREDICTED: uncharacterized protein LOC101264...    57   3e-06
gb|EMJ26908.1| hypothetical protein PRUPE_ppa005050mg [Prunus pe...    56   6e-06
ref|XP_004300664.1| PREDICTED: uncharacterized protein LOC101292...    55   7e-06
ref|XP_006354053.1| PREDICTED: uncharacterized protein LOC102590...    55   1e-05
ref|XP_002872402.1| hypothetical protein ARALYDRAFT_351968 [Arab...    55   1e-05
ref|XP_002285818.1| PREDICTED: uncharacterized protein LOC100260...    55   1e-05

>ref|NP_192594.2| DNA-directed RNA polymerase II protein [Arabidopsis thaliana]
           gi|23297675|gb|AAN13006.1| unknown protein [Arabidopsis
           thaliana] gi|332657255|gb|AEE82655.1| DNA-directed RNA
           polymerase II protein [Arabidopsis thaliana]
          Length = 473

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 32/81 (39%), Positives = 45/81 (55%)
 Frame = -1

Query: 243 MTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXAN 64
           MTKR  +C IC++ N    CT CVN RL E   ++  +  +RD               A+
Sbjct: 1   MTKRSSNCAICDNTNRPCICTACVNHRLIEYNTLLKSLKTRRDSLLSRFNELLESKGKAD 60

Query: 63  EQKYWRHIEEEKVSQLKEKLK 1
           +QK WR I+ EK+S+LK+KLK
Sbjct: 61  DQKNWRLIQNEKISKLKKKLK 81


>emb|CAB77979.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 32/81 (39%), Positives = 45/81 (55%)
 Frame = -1

Query: 243 MTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXAN 64
           MTKR  +C IC++ N    CT CVN RL E   ++  +  +RD               A+
Sbjct: 1   MTKRSSNCAICDNTNRPCICTACVNHRLIEYNTLLKSLKTRRDSLLSRFNELLESKGKAD 60

Query: 63  EQKYWRHIEEEKVSQLKEKLK 1
           +QK WR I+ EK+S+LK+KLK
Sbjct: 61  DQKNWRLIQNEKISKLKKKLK 81


>gb|AAL59980.1| unknown protein [Arabidopsis thaliana]
          Length = 473

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 32/81 (39%), Positives = 45/81 (55%)
 Frame = -1

Query: 243 MTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXAN 64
           MTKR  +C IC++ N    CT CVN RL E   ++  +  +RD               A+
Sbjct: 1   MTKRSSNCAICDNTNRPCICTACVNHRLIEYNTLLKSLKTRRDSLLSRFNELLESKGKAD 60

Query: 63  EQKYWRHIEEEKVSQLKEKLK 1
           +QK WR I+ EK+S+LK+KLK
Sbjct: 61  DQKNWRLIQNEKISKLKKKLK 81


>ref|XP_001779720.1| predicted protein [Physcomitrella patens]
           gi|162668918|gb|EDQ55516.1| predicted protein
           [Physcomitrella patens]
          Length = 465

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 31/81 (38%), Positives = 43/81 (53%)
 Frame = -1

Query: 243 MTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXAN 64
           M +R   CGICESVNL   C+ C+N RL E YK++  +   RD               A 
Sbjct: 1   MARRSCVCGICESVNLPSVCSACINYRLLERYKLLKNLAQGRDFLRQRLDEKLIAKREAE 60

Query: 63  EQKYWRHIEEEKVSQLKEKLK 1
            Q++WR    E+ +QLKE+L+
Sbjct: 61  LQQHWRVEHAERRAQLKERLR 81


>gb|EOY16121.1| DNA-directed RNA polymerase II protein isoform 2 [Theobroma cacao]
          Length = 323

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 27/82 (32%), Positives = 45/82 (54%)
 Frame = -1

Query: 246 MMTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXA 67
           MM+K+  +C IC++ N    C  CVN RLNE   ++  + ++RD               A
Sbjct: 1   MMSKKASNCAICDNSNRASICAVCVNYRLNEYNSLLKSLKSRRDFLYSKLDEVLAAKRKA 60

Query: 66  NEQKYWRHIEEEKVSQLKEKLK 1
           ++Q  W+ ++ EK++ LKEKL+
Sbjct: 61  DDQLNWKILQNEKLTDLKEKLR 82


>gb|EOY16120.1| DNA-directed RNA polymerase II protein isoform 1 [Theobroma cacao]
          Length = 479

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 27/82 (32%), Positives = 45/82 (54%)
 Frame = -1

Query: 246 MMTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXA 67
           MM+K+  +C IC++ N    C  CVN RLNE   ++  + ++RD               A
Sbjct: 1   MMSKKASNCAICDNSNRASICAVCVNYRLNEYNSLLKSLKSRRDFLYSKLDEVLAAKRKA 60

Query: 66  NEQKYWRHIEEEKVSQLKEKLK 1
           ++Q  W+ ++ EK++ LKEKL+
Sbjct: 61  DDQLNWKILQNEKLTDLKEKLR 82


>ref|XP_004237862.1| PREDICTED: uncharacterized protein LOC101264619 [Solanum
           lycopersicum]
          Length = 481

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = -1

Query: 243 MTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXAN 64
           MT++   CGICE+ NL   CT CVN RLNE   ++  +  +R+               A+
Sbjct: 1   MTRKTSCCGICENSNLPSVCTLCVNYRLNEYSTVLKSLKGRREALCGQLSEILLAKGKAD 60

Query: 63  EQKYWRHIEEEKVSQLKEKLK 1
           +Q  WR    EK+++L+EKL+
Sbjct: 61  DQLSWRVPRNEKLARLREKLR 81


>gb|EMJ26908.1| hypothetical protein PRUPE_ppa005050mg [Prunus persica]
           gi|462422646|gb|EMJ26909.1| hypothetical protein
           PRUPE_ppa005050mg [Prunus persica]
          Length = 479

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 28/82 (34%), Positives = 43/82 (52%)
 Frame = -1

Query: 246 MMTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXA 67
           MM ++  +C ICES NL   C  CVN RL E    +  + ++RD               A
Sbjct: 1   MMNRKSSNCAICESSNLASVCAICVNYRLTEYNSSLKALKSRRDSLYSRLTEALVAKGKA 60

Query: 66  NEQKYWRHIEEEKVSQLKEKLK 1
           ++Q  WR ++ EK+ +L+EKL+
Sbjct: 61  DDQLNWRVLQNEKLVRLREKLR 82


>ref|XP_004300664.1| PREDICTED: uncharacterized protein LOC101292418 [Fragaria vesca
           subsp. vesca]
          Length = 478

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = -1

Query: 246 MMTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXA 67
           M  K+  +C ICE+ NL   C  CVN RLN+    +  + ++RD               A
Sbjct: 1   MTNKKSSNCAICENSNLASICAVCVNYRLNDYNNSLKALKSRRDLLYSRLSDALVAKGKA 60

Query: 66  NEQKYWRHIEEEKVSQLKEKLK 1
           ++Q  WR +++EK+ +L+EKL+
Sbjct: 61  DDQLNWRILQDEKLVRLREKLR 82


>ref|XP_006354053.1| PREDICTED: uncharacterized protein LOC102590673 isoform X1 [Solanum
           tuberosum] gi|565375051|ref|XP_006354054.1| PREDICTED:
           uncharacterized protein LOC102590673 isoform X2 [Solanum
           tuberosum]
          Length = 483

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 43/81 (53%)
 Frame = -1

Query: 243 MTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXAN 64
           MT +   CGICE+ NL   CT CVN RLNE   ++  +  +R+               A+
Sbjct: 1   MTLKTSCCGICENSNLPSVCTLCVNYRLNEYSTVLKSLKGRREALCGKLSEILLAKGKAD 60

Query: 63  EQKYWRHIEEEKVSQLKEKLK 1
           +Q  WR    EK+++L+EKL+
Sbjct: 61  DQLSWRVPRNEKLARLREKLR 81


>ref|XP_002872402.1| hypothetical protein ARALYDRAFT_351968 [Arabidopsis lyrata subsp.
           lyrata] gi|297318239|gb|EFH48661.1| hypothetical protein
           ARALYDRAFT_351968 [Arabidopsis lyrata subsp. lyrata]
          Length = 447

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 42/81 (51%)
 Frame = -1

Query: 243 MTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXAN 64
           M KR  +C ICE+ N    C+ CVN RL E   ++  +  +RD               A+
Sbjct: 1   MIKRSSNCAICENSNRACICSACVNHRLIEYNTLLKSLKTRRDSLLSRLSHLLESKGKAD 60

Query: 63  EQKYWRHIEEEKVSQLKEKLK 1
           +QK WR I+ E + +LK+KLK
Sbjct: 61  DQKNWRLIQNENILKLKKKLK 81


>ref|XP_002285818.1| PREDICTED: uncharacterized protein LOC100260778 [Vitis vinifera]
           gi|302141899|emb|CBI19102.3| unnamed protein product
           [Vitis vinifera]
          Length = 478

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 42/81 (51%)
 Frame = -1

Query: 243 MTKRGFSCGICESVNLTYTCTTCVNSRLNEVYKIILVVGNQRDXXXXXXXXXXXXXXXAN 64
           MT++  SC ICE  NL   C  CVN RLNE    +     +RD               A+
Sbjct: 1   MTRKTSSCSICEKSNLASICAVCVNYRLNEYNTSLKSSKGRRDSLYLRLSEVLVAKGKAD 60

Query: 63  EQKYWRHIEEEKVSQLKEKLK 1
           +Q  WR ++ EK+++L+EKL+
Sbjct: 61  DQINWRVLQNEKLARLREKLR 81