BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00014036
         (2635 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A...   823   0.0  
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu...   810   0.0  
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   806   0.0  
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]       798   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   798   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   796   0.0  
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici...   796   0.0  
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   796   0.0  
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro...   795   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   794   0.0  
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...   787   0.0  
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe...   786   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      786   0.0  
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   784   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      783   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   781   0.0  
ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polyme...   780   0.0  
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   779   0.0  
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   779   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   779   0.0  

>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
            gi|548839203|gb|ERM99496.1| hypothetical protein
            AMTR_s00088p00026960 [Amborella trichopoda]
          Length = 1107

 Score =  823 bits (2125), Expect = 0.0
 Identities = 430/815 (52%), Positives = 571/815 (70%), Gaps = 8/815 (0%)
 Frame = -2

Query: 2634 PTLTCEFFNVLT-NPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNS 2458
            PT+  +  ++L  N N + L    AL++L KS  TC  P + +Q  + ++   N K+L S
Sbjct: 298  PTIGQDLLDILAGNENVAKL----ALAKLHKSEATCYDPLQIIQRHINDITR-NKKKLQS 352

Query: 2457 LIVSPSKD--LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGR 2284
               S  +D  LM  +R LVTPSKVYF+GPEL  SN + +HF+ +A DF+RVSFVDED  +
Sbjct: 353  PSSSKLEDHNLMNCHRALVTPSKVYFLGPELETSNYIVKHFAAYADDFLRVSFVDEDWSK 412

Query: 2283 LHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVW 2104
            L ++AL+ KL  E     +P+RTN+Y+RI+++L +GI + +KRFEFLAFS+SQLR N+VW
Sbjct: 413  LPSDALSPKL--ESGFFAKPYRTNIYKRIVSVLRDGIVLGSKRFEFLAFSASQLRSNAVW 470

Query: 2103 MFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVT 1924
            MF+S++ ++ E IR+WMG F+++R +AK AARMGQ FSSS  T  V  HEV  I DIEVT
Sbjct: 471  MFASNENISVESIREWMGEFKNLRCIAKCAARMGQLFSSSTPTLSVPLHEVQVIPDIEVT 530

Query: 1923 TKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLR 1744
            T G++YCFSDGIGKIS   AR++A+RCGL   PSAFQIRY GYKGV+A+DPTS+HKL+LR
Sbjct: 531  TDGIEYCFSDGIGKISLAFARQVARRCGLKQPPSAFQIRYGGYKGVIAIDPTSFHKLALR 590

Query: 1743 PSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLE 1564
            PSM KFNS+N  L V  WS+ +PCYLNREII LLSTL + D  F+++Q+ ++   + ML 
Sbjct: 591  PSMQKFNSNNTMLCVTKWSQSMPCYLNREIITLLSTLEIADHKFEAMQKQQMTLLDDMLT 650

Query: 1563 NEENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFV 1387
              + A+++L  M   D K +L +ML  GC PS+EP+L+ MLQA RD  LS+++SKCR+FV
Sbjct: 651  KRDVALNVLEDMIVGDYKEVLTKMLLHGCDPSTEPYLSMMLQALRDHQLSDIRSKCRLFV 710

Query: 1386 PRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGASSLEELE--THVIEGDVVVAKNP 1213
             +G VL+GCLDE+ TL  GEVF++V+ TK +   DG    E ++  T V+ G VVV KNP
Sbjct: 711  SKGRVLLGCLDESGTLSQGEVFLRVTMTKAELENDGQPFFERIDETTSVVVGAVVVTKNP 770

Query: 1212 CLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLV 1039
            CLHPGD+R L+AV+   LV   MVDC VFPQ G RPHPNECSG DLDGDL+FV WD  L+
Sbjct: 771  CLHPGDVRVLQAVSGLELVDQGMVDCLVFPQNGERPHPNECSGGDLDGDLFFVCWDKDLI 830

Query: 1038 PPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKA 859
            P   +P   MDY GR    +DH VT+EEIQE+FV+YM+ND+LG I+NAH+V ADRE  KA
Sbjct: 831  PTTNDP--AMDYLGRRPRIMDHEVTMEEIQEFFVDYMINDNLGAISNAHLVLADREKSKA 888

Query: 858  RSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRD 679
            RS KC+ELA+LH+ AVDFAKTGAPAEMP  L+ +EYPDFME+  K  Y S  ILGKLYR 
Sbjct: 889  RSPKCIELAKLHSMAVDFAKTGAPAEMPRSLMLKEYPDFMERGEKSTYASPGILGKLYRL 948

Query: 678  SYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQ 499
            + +        L+ S+ V    YD +   +GF++ ++ A  HK  Y  KL  LM YYG +
Sbjct: 949  AKEASNSQSFELVSSKNVALPFYDTNLLAKGFEEFIELAVKHKEAYGQKLQELMDYYGAE 1008

Query: 498  NEAEIISGNIRMPSRGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALA 319
            +E+EI+SGNI   S     + +K+ + KD+IL+AV+ L+ EA+GWF  SC+  ++S  LA
Sbjct: 1009 SESEILSGNISKKSGYLQRDNRKYGEVKDRILIAVKNLQREAQGWFKSSCE-PNQSSKLA 1067

Query: 318  SAWYHVTYHSSYWSKGNLISFPWIRYDLILKTKRY 214
            SAWYHVTY   ++SK N  SFPWI  D++L  K +
Sbjct: 1068 SAWYHVTYRPDHFSKVNFFSFPWILADVLLNIKAF 1102


>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| hypothetical protein
            POPTR_0015s08500g [Populus trichocarpa]
          Length = 1110

 Score =  810 bits (2091), Expect = 0.0
 Identities = 416/793 (52%), Positives = 557/793 (70%), Gaps = 7/793 (0%)
 Frame = -2

Query: 2568 IALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVSPSKDLMQFYRVLVTPSKVY 2389
            I L +L K   TC  P  +++  L E  ++ PK L         ++M  +R L+TPSK++
Sbjct: 326  IILQKLHKLKMTCYDPLSFVKQSLRESLSSPPKSLTE------NNIMSCHRALITPSKIF 379

Query: 2388 FIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWRTNV 2209
             +GPE   SN V +HF+ +ASDFIRV+FV+ED  +L ANA++  +  ++ I  +P+RT +
Sbjct: 380  CLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAISTSI--QRGIFAKPFRTGI 437

Query: 2208 YERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFEDIRN 2029
            Y RI++IL +G  I  KRFEFLAFS+SQLR NSVWMF+S+  + AE IRKWMG F+ IR+
Sbjct: 438  YHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRS 497

Query: 2028 VAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARRIAK 1849
            V+K AARMGQ FSSS  T +V   +V  I DIEVTT G+ YCFSDGIGKIS   A+++A 
Sbjct: 498  VSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAH 557

Query: 1848 RCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPLPCY 1669
            +CGL  TPSAFQIRY GYKGVVAVD  S+ KLSLR SMLKF+S+NR L+V  WS+ +PCY
Sbjct: 558  KCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCY 617

Query: 1668 LNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDSK-ILIEML 1492
            LNREII LLSTLGV DE FQ+LQ+ ++ +  +ML N+E+A+D+L  ++  DSK IL++ML
Sbjct: 618  LNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILVQML 677

Query: 1491 SSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVFIQV 1312
              G  P+ EP+L+ MLQA+ +  L EL+S+CRIFVP+G +LIGCLDE+  LDYG+V++++
Sbjct: 678  LQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDYGQVYVRI 737

Query: 1311 SKTKIKGNYDGASSLEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVH--MVD 1144
            + TK +      S   +++  T  I G+V V KNPCLHPGDIR L+AV    L    +VD
Sbjct: 738  TMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVD 797

Query: 1143 CAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHNVT 964
            C +FPQ G RPHPNECSG DLDGD +F+SWD  L+P     E PMDY G     +DHNVT
Sbjct: 798  CIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLP--CHTEAPMDYVGGRQRIMDHNVT 855

Query: 963  IEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAPA 784
            +EEIQ +FV+YM+ND+LG I+ AH+VHAD EP KARSEKCL+LA LH+ AVDFAKTGAPA
Sbjct: 856  LEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPA 915

Query: 783  EMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINYDK 604
            EMPL L PRE+PDFME+  K MY S  +LGKLYRD +D   ++    M S+++ +  YD+
Sbjct: 916  EMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQ 975

Query: 603  SFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKKHS 424
              E +GF+D L  A ++K  Y  K++ LM YYG + E EI++GN+R        + +K+ 
Sbjct: 976  DLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNRKYG 1035

Query: 423  DRKDKILMAVEALRTEARGWFDESCK-LHHKSFALASAWYHVTYHSSYW-SKGNLISFPW 250
            D KD+IL++++ L+ EA+ WF+ SC    H+   +ASAWYHVTYH +Y+  + N +SFPW
Sbjct: 1036 DVKDRILVSLKNLKKEAKEWFESSCNPTEHQ--CMASAWYHVTYHPTYFHERMNCLSFPW 1093

Query: 249  IRYDLILKTKRYN 211
            I  D++L  K  N
Sbjct: 1094 IVGDILLNIKSLN 1106


>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
            vesca]
          Length = 1136

 Score =  806 bits (2083), Expect = 0.0
 Identities = 405/796 (50%), Positives = 567/796 (71%), Gaps = 6/796 (0%)
 Frame = -2

Query: 2571 NIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVSPSKDLMQFYRVLVTPSKV 2392
            N+ L +L K  TTC  P  +++ +L  L+  + K+L+        ++M  +RVL+TPSK+
Sbjct: 327  NVLLEKLQKLKTTCYDPLSFVKVQLQLLERNSKKRLSPHQRLMEHNVMSCHRVLITPSKI 386

Query: 2391 YFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWRTN 2212
            Y +GPEL +SN V ++F+ +ASDF+RV+FV+ED G+L  NAL+  +  EQ    +P+RT 
Sbjct: 387  YCLGPELEKSNYVVKNFAQYASDFMRVTFVEEDWGKLPVNALSTSI--EQGFFAKPFRTG 444

Query: 2211 VYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFEDIR 2032
            +Y+RI++IL +GI I +KRFEFLAFS+SQLR NSVWMF+S+  + AE IR WMG F  IR
Sbjct: 445  IYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWMFASNDSVKAEDIRDWMGCFNKIR 504

Query: 2031 NVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARRIA 1852
            +V+K AARMGQ FSSS  T  V + +V  I DIE TT GV YCFSDGIGKIS   AR++A
Sbjct: 505  SVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIETTTDGVSYCFSDGIGKISLSFARQVA 564

Query: 1851 KRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPLPC 1672
            ++CGL+ TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF+SDNR L+V  WS  +PC
Sbjct: 565  QKCGLNDTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFDSDNRMLNVTKWSSSMPC 624

Query: 1671 YLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDS-KILIEM 1495
            +LNREII L+STLGV DE+F++LQ++++    +M ++   A+  L  +S  DS  IL+++
Sbjct: 625  FLNREIITLMSTLGVEDEAFEALQQEQLDLLGRMRKDRNVALSSLEKLSGADSNNILVKL 684

Query: 1494 LSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVFIQ 1315
            L  G  P+ EP+L+ MLQA  + HL++LKS+CR++VP+G +L+GCLDET TL+YG+V+++
Sbjct: 685  LLQGYEPNLEPYLSMMLQAHYEHHLADLKSRCRMYVPKGRILVGCLDETGTLNYGQVYLR 744

Query: 1314 VSKTKIKGNYDGASSLEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL--VHMV 1147
            ++ TK +      S  + ++  T ++ G VVV KNPCLHPGDIR L+AV   GL   +MV
Sbjct: 745  ITMTKAEQEMGHQSFFQRVDEATCIVTGKVVVTKNPCLHPGDIRVLEAVYDVGLEEKNMV 804

Query: 1146 DCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHNV 967
            DC +FPQKG RPHPNECSG DLDGDL+F+SWD  L+PP   P  PMDY+ R    +DH+V
Sbjct: 805  DCILFPQKGERPHPNECSGGDLDGDLFFISWDKSLIPPTTVP--PMDYSARRPRNMDHDV 862

Query: 966  TIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAP 787
            T+EEIQ++FV+YM+ND+LG I+ AH+VH+D EP KA S+KCLELA LH+ AVDFAKTGAP
Sbjct: 863  TLEEIQKFFVDYMINDNLGAISTAHLVHSDHEPEKAMSKKCLELADLHSMAVDFAKTGAP 922

Query: 786  AEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINYD 607
            AE+   L P+E+PDFME+  +PMY S   LGKLYR     + ++  +++ S++  +  YD
Sbjct: 923  AELSWILKPKEFPDFMERVERPMYISNGALGKLYRAIRSSVVQEQTIVVWSQQRAEEAYD 982

Query: 606  KSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKKH 427
            +  E +GF+  L+ AE H+  Y  K+ +LM YY    E EI++GN+R  +     + +++
Sbjct: 983  RELEVQGFESFLEMAESHRDKYIEKMRSLMNYYEATTEDEILTGNLRNRAAYLQRDNRRY 1042

Query: 426  SDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSYWSKG-NLISFPW 250
             D KD+IL++++ L+ EA+GWF+ SCK+  +   LASAWYHVTY+ +Y+ +  N +SFPW
Sbjct: 1043 FDLKDRILLSLKTLQKEAKGWFESSCKVSEQQ-RLASAWYHVTYNLAYFQEDMNCLSFPW 1101

Query: 249  IRYDLILKTKRYNDTK 202
            I  D++L  K  N  +
Sbjct: 1102 IVGDILLNIKSLNSRR 1117


>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
          Length = 1115

 Score =  798 bits (2060), Expect = 0.0
 Identities = 399/797 (50%), Positives = 560/797 (70%), Gaps = 7/797 (0%)
 Frame = -2

Query: 2571 NIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVSPSKDLMQFYRVLVTPSKV 2392
            N  + +L K  +TC  P    ++  + L+       +++       LM  +R L+TPSK+
Sbjct: 322  NAVIQKLHKLKSTCYDPLSLAKTYAHILEKNTKNPSSAIKRLTENSLMSCHRALITPSKI 381

Query: 2391 YFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWRTN 2212
            Y +GPEL  SN V ++F+ +ASDF+RV+FV+ED G+LH + ++  +  EQ I  +P+RT 
Sbjct: 382  YCMGPELETSNYVVKNFAAYASDFLRVTFVEEDWGKLHPHVVSTSI--EQGIFAKPYRTG 439

Query: 2211 VYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFEDIR 2032
            +Y+RI++IL NGI I  KR+EFLAFS+SQLR ++VWMF+S+  + AE IR+WMG F  IR
Sbjct: 440  IYDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFASNDNVKAEDIREWMGCFNKIR 499

Query: 2031 NVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARRIA 1852
            +V+K AARMGQ FSSS  T IV   ++  I D+EVTT G+ YCFSDGIGKISS  AR++A
Sbjct: 500  SVSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTTDGIDYCFSDGIGKISSSFARQVA 559

Query: 1851 KRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPLPC 1672
            ++CGL  TPSAFQIRY GYKGV+AV+ +S+ KLSLR SMLKF S NR L+V  WS  +PC
Sbjct: 560  QKCGLKETPSAFQIRYGGYKGVIAVNRSSFRKLSLRSSMLKFESSNRMLNVTKWSGSMPC 619

Query: 1671 YLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRD-SKILIEM 1495
            YLNREI+ LLS+LGV DESF +L R+++    +M  N E A+++L  ++  D S IL++M
Sbjct: 620  YLNREIVSLLSSLGVKDESFLALLREQLLLLGKMRTNREAALNVLENLNGSDSSNILVKM 679

Query: 1494 LSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVFIQ 1315
            L  G  P++EP+L+ M+Q++ +  LS+LK++CRIFVP+G VLIGCLDET  L+YG+V+++
Sbjct: 680  LLQGYEPNAEPYLSMMIQSYYENQLSDLKTRCRIFVPKGKVLIGCLDETGILEYGQVYVR 739

Query: 1314 VSKTKIK---GNYDGASSLEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVH--M 1150
            ++  K +   GN      +++ ET ++ G VVV KNPCLHPGD+R L+AV    L    +
Sbjct: 740  LTMKKAELEAGNQSFFRKVDD-ETSIVVGKVVVTKNPCLHPGDVRVLEAVYDAKLEEEGL 798

Query: 1149 VDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHN 970
            VDC VFPQKG RPHPNECSG DLDGDL+F+SWD  L+PP+     PMDY GR    +DH+
Sbjct: 799  VDCLVFPQKGERPHPNECSGGDLDGDLFFISWDTNLIPPR--TTAPMDYIGRRPRIMDHD 856

Query: 969  VTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGA 790
            VT+EEIQ++FV+YM+ND+LG I+ AH++HADREP KA SE CL+LA LH+ AVDFAKTGA
Sbjct: 857  VTLEEIQKFFVDYMINDTLGGISTAHLIHADREPEKAFSENCLQLATLHSMAVDFAKTGA 916

Query: 789  PAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINY 610
            PAEMP  L PR+YPDFME+  +PMY S   LGKLYR + +   +    L+ S +  +  Y
Sbjct: 917  PAEMPRALRPRDYPDFMERLDRPMYVSNGALGKLYRATVESESQGSSNLVWSEKTAEAAY 976

Query: 609  DKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKK 430
            D+  E  GF++ +  AE H+  Y  K+  +M YY +++E E+++GN+R  +     + ++
Sbjct: 977  DRDLEVNGFEEFIALAESHRDMYIDKMNGIMNYYELESEDEVLTGNLRKRAAYLQRDNRR 1036

Query: 429  HSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSYWSKG-NLISFP 253
            + + KD+IL+AV++L+ EA+GWF+ SC+   +   +ASAWYHVTYH +Y+ K  N +SFP
Sbjct: 1037 YFEVKDRILLAVKSLQREAKGWFEGSCEAMEQQ-KMASAWYHVTYHPNYYQKSINCLSFP 1095

Query: 252  WIRYDLILKTKRYNDTK 202
            WI+ D++L  K  N  +
Sbjct: 1096 WIKGDILLNIKSINSQR 1112


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  798 bits (2060), Expect = 0.0
 Identities = 424/824 (51%), Positives = 553/824 (67%), Gaps = 10/824 (1%)
 Frame = -2

Query: 2634 PTLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSL 2455
            P L  EF+ +L    Y    I+ +L +LF     C +P RWL+   Y+  N++ K   S 
Sbjct: 298  PALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREE-YKKLNSSKKLPLSP 356

Query: 2454 IVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHA 2275
             +S    L+  YRVLVTP++VYF+GPE+N SNRV RH+S++ ++F+R+SFVDEDL ++H+
Sbjct: 357  TISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIHS 416

Query: 2274 NALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFS 2095
              L+ +  T++       RT +Y+RI ++L +GI I +K+FEFLAFSSSQLRENS WMF+
Sbjct: 417  MDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 469

Query: 2094 SSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKG 1915
                LTA HIR WMG+F+ IRNVAKYAAR+GQSFSSS  T  V+  E+  I D+E     
Sbjct: 470  PRDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLD 529

Query: 1914 VKYCFSDGIGKISSKMARRIAKRCGL-DPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPS 1738
             +Y FSDGIGKIS++ AR++AK+CGL + +PSAFQIRY GYKGVVAVDP S  KLSLR S
Sbjct: 530  TRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 589

Query: 1737 MLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENE 1558
            M KF S N  LDVL WSK  PCYLNR+II LLSTLGV D  F+  QR+ V + + +L + 
Sbjct: 590  MSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDP 649

Query: 1557 ENAIDILHLMS-DRDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPR 1381
              A + L LM+   ++ IL ++L  G  P +EPFL+ MLQ FR   L EL++K RIF+P 
Sbjct: 650  LEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPG 709

Query: 1380 GNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGASSLEELETHVIEGDVVVAKNPCLHP 1201
            G  ++GCLDETRTL+YG+V +Q S   + G           + ++I G VVVAKNPCLHP
Sbjct: 710  GRSMMGCLDETRTLEYGQVVVQYSNPTMPG-----------KRYIITGPVVVAKNPCLHP 758

Query: 1200 GDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEP 1021
            GD+R L+AVNVP L HMVDC VFPQKG+RPHPNECSGSDLDGD+YF+ WD  L+PP+   
Sbjct: 759  GDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPR--T 816

Query: 1020 EEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCL 841
             EPMDYT  PA  LDH+VTIEE++EYF NY++NDSLGIIANAH   AD+EPLKA S+ C+
Sbjct: 817  SEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCI 876

Query: 840  ELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRME 661
            ELAR  + AVDF KTG  AE+P  L  +EYPDFM+K  KP YES +++GKL+R+  +R  
Sbjct: 877  ELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAP 936

Query: 660  EDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEII 481
                +   +  V   +YDK  E EGF++++ EA  HK  YD +L  LM YYG++ EAEI+
Sbjct: 937  PLISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEIL 996

Query: 480  SGNIRMPSRGTINEKKKHSDRKDKILMAVEALRTEARGWFDES-CKLHHKSFALASAWYH 304
            SG I   S+     +   S     I  AV ALR EA  WF+ +  K      A ASAWYH
Sbjct: 997  SGGIMRMSKSFTKRRDAES-----IGRAVRALRKEALSWFNNAEDKNDFDESAKASAWYH 1051

Query: 303  VTYHSSYW-------SKGNLISFPWIRYDLILKTKRYNDTKIQK 193
            VTYHSSYW       ++ + +SF W  YD +++ K+ N  + Q+
Sbjct: 1052 VTYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGRRQR 1095


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  796 bits (2057), Expect = 0.0
 Identities = 423/825 (51%), Positives = 556/825 (67%), Gaps = 19/825 (2%)
 Frame = -2

Query: 2634 PTLTCEFFNVLTNPNYSPLHINI---ALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQL 2464
            P L   F+  L +P  +P+ I+    AL +L+     C +P+RWL  + Y    T+  + 
Sbjct: 300  PLLDSNFYR-LVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ-YRKYMTSRSKP 357

Query: 2463 NSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGR 2284
            +S  +S    L+  +RV VTPS+VYF GPE+N SNRV RHF     +F+R+SF+DEDL +
Sbjct: 358  SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 417

Query: 2283 LHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVW 2104
            +H+  L+ +  +  DI     RT +Y RI++ L NGI I +++FEFLAFSSSQLRE+S W
Sbjct: 418  IHSTDLSPRGSSATDIT----RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 473

Query: 2103 MFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVT 1924
            MF+S   LTA  IR+WMGNF +IRNVAKYAAR+GQSFSSS  T  V   E+  I D+++ 
Sbjct: 474  MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 533

Query: 1923 TKGVKYCFSDGIGKISSKMARRIAKRCGL-DPTPSAFQIRYAGYKGVVAVDPTSYHKLSL 1747
                KY FSDGIGK+S++ AR++A +CGL D  PSAFQIRY GYKGVVA DPTS  KLSL
Sbjct: 534  IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 593

Query: 1746 RPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQML 1567
            R SM K+ S+   LDVL WSK  PC+LNR++I LLSTLG+ DE F+  QR+ V++ + +L
Sbjct: 594  RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 653

Query: 1566 ENEENAIDILHLMSD-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIF 1390
             +   A + L LMS   ++ IL E+L  G  P +EPFL+ MLQ FR   L EL++K RIF
Sbjct: 654  TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 713

Query: 1389 VPRGNVLIGCLDETRTLDYGEVFIQVSKT---KIKGNYDGASSLEELETHVIEGDVVVAK 1219
            +P G  ++GCLDETRTL+YG+VF+Q+S     ++ G     SS    +  +++G VVVAK
Sbjct: 714  IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 773

Query: 1218 NPCLHPGDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLV 1039
            NPCLHPGD+R LKAVNVP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WD  L+
Sbjct: 774  NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 833

Query: 1038 PPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKA 859
            PP+++P  PMDYT   +++LDH+V IE+++EYF NY++NDSLGIIANAH V ADREP KA
Sbjct: 834  PPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKA 891

Query: 858  RSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRD 679
            RSE CL+LA   + AVDF KTG PAE+P  L  +EYPDFMEK  KP YES +++GKL+R 
Sbjct: 892  RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRA 951

Query: 678  SYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQ 499
              D       + + ++ V + +YD   E +GF+DH+ +A  HK  YD KL  LM YYG++
Sbjct: 952  VKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK 1011

Query: 498  NEAEIISGNIRMPSRGTINEKKKHSDRKD--KILMAVEALRTEARGWFDE--SCKLHHKS 331
             EAEI++G+I   S       K  + R+D   I MAV ALR EAR WF E         +
Sbjct: 1012 TEAEILTGSIMKMS-------KSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDA 1064

Query: 330  FALASAWYHVTYHSSYW-------SKGNLISFPWIRYDLILKTKR 217
            +A ASAWYHVTYH  YW       ++ + +SFPW  YD +++ K+
Sbjct: 1065 YAKASAWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKK 1109


>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 983

 Score =  796 bits (2057), Expect = 0.0
 Identities = 406/800 (50%), Positives = 558/800 (69%), Gaps = 11/800 (1%)
 Frame = -2

Query: 2562 LSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVSPSKDL-----MQFYRVLVTPS 2398
            L +L K   TC  P  +++ +L+       + L     S SK+L     M  +R L+TPS
Sbjct: 176  LQKLHKLAVTCYDPLAFIKKQLH----VPGRNLKRPFFSSSKNLVNHNIMSCHRALITPS 231

Query: 2397 KVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWR 2218
            K+Y +GPEL  SN V ++F+ +ASDF+RV+FV+ED  +L ANA+++ +  ++ I  +P+R
Sbjct: 232  KIYCLGPELESSNYVVKNFASYASDFMRVTFVEEDWSKLPANAISMSI--QRGIFAKPFR 289

Query: 2217 TNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFED 2038
            T +Y RI++IL +GI I  K+FEFLAFS+SQLR NSVWMF+S+    AE IR+WMG F  
Sbjct: 290  TGIYHRILSILRDGIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMGCFNK 349

Query: 2037 IRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARR 1858
            I +++K AARMGQ FSSS  T IV   ++  I DIEVT+ G+ YCFSDGIGKIS   AR+
Sbjct: 350  IHSISKCAARMGQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLSFARQ 409

Query: 1857 IAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPL 1678
            +A++CGL+ TPSAFQIRY GYKGV+AVD  S+ KLSLR SM KF S+NR L+V  WS+ +
Sbjct: 410  VAQKCGLNRTPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKWSESM 469

Query: 1677 PCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDSK-ILI 1501
            PCYLNREII LL+TLGV DE F+ LQ+ ++Q  N+ML N E+A+++L  ++  + K ILI
Sbjct: 470  PCYLNREIITLLTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILI 529

Query: 1500 EMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVF 1321
            +ML  G  P+ EP+L+ MLQA+ +  L EL+S+CRIFVP+G +LIGCLDETR LDYG+V+
Sbjct: 530  KMLVQGYEPNVEPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVY 589

Query: 1320 IQVSKTKIKGNYDGASSLEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVH-- 1153
            ++++ TK +      +S   ++  T V+ G V+V KNPCLHPGDIR L+AV    L    
Sbjct: 590  VRITMTKAELQDADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKG 649

Query: 1152 MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDH 973
            +VDC +FPQKG RPHPNECSG DLDGD +F+SWD  L+P   E E PMDY GR   ++DH
Sbjct: 650  LVDCILFPQKGERPHPNECSGGDLDGDQFFISWDKGLIP--GETESPMDYQGRRPRKMDH 707

Query: 972  NVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTG 793
            +VT+EEIQ++F++YM+ND+LG I+ AH+VHADREP KARS KCL+LA LH+ AVDFAKTG
Sbjct: 708  DVTLEEIQKFFIDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTG 767

Query: 792  APAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKIN 613
            APAEMP  L P+E+PDFME+  K MY S  +LGKLYR + D   +     + +  + +  
Sbjct: 768  APAEMPKALKPKEFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENIAEAT 827

Query: 612  YDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKK 433
            YD   E +GF++ ++ A  HK  Y  KL+ LM YY  + E EI++GN++  +     + +
Sbjct: 828  YDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNR 887

Query: 432  KHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSYWSKG-NLISF 256
            ++ D KD+IL++V++L+ EA+ WF+  C+   K   LASAWYHVTYH SY+ +G   +SF
Sbjct: 888  RYGDTKDRILISVKSLQKEAKEWFESCCQAKEKQ-RLASAWYHVTYHPSYFQEGITCLSF 946

Query: 255  PWIRYDLILKTKRYNDTKIQ 196
            PWI  D++L  K  N   ++
Sbjct: 947  PWIVADILLNIKSANSKNLK 966


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score =  796 bits (2056), Expect = 0.0
 Identities = 429/808 (53%), Positives = 550/808 (68%), Gaps = 19/808 (2%)
 Frame = -2

Query: 2583 PLHINI-----ALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVSPSKDLMQFY 2419
            PL IN+     AL +++ S   C +P RWL+ +     N+N   L S  +S    L+   
Sbjct: 317  PLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSN-YPLQSPSISLDNGLVYVR 375

Query: 2418 RVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQD 2239
            RV +TP KVYF GPE+N SNRV RHF +H  +F+RVSFVDE+L +L++  L+ ++     
Sbjct: 376  RVQITPCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELDKLYSTDLSSRISVGV- 434

Query: 2238 ILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFS-SSKYLTAEHIR 2062
                  RT VY RI++IL NGI I +K+FEFLAFSSSQLRENS+WMF+ ++  LTA+ IR
Sbjct: 435  ------RTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIR 488

Query: 2061 KWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGK 1882
             WMG+F  IRNVAKYAAR+GQSF SS  T  V  +E+  I D +V    ++Y FSDGIGK
Sbjct: 489  AWMGDFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEIIPDAQVKHDTIEYVFSDGIGK 548

Query: 1881 ISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLD 1702
            IS + ARR+AK+CG D TPSAFQIRY GYKGVVAVDPTS  KLSLR SM K++SDN  LD
Sbjct: 549  ISLEFARRVAKKCGYDSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMYKYDSDNTKLD 608

Query: 1701 VLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSD 1522
            VL  SK  PCYLNR++I LLSTL V D  F+  Q++ V + N +L N   A ++L LMS 
Sbjct: 609  VLACSKYQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVNQLNTILTNSLKAQEVLDLMST 668

Query: 1521 RD-SKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETR 1345
             + + IL EML  G  P+ EPFL+ MLQ FR   L EL+ K RIF+P+G  ++G LDETR
Sbjct: 669  GEITNILKEMLFCGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETR 728

Query: 1344 TLDYGEVFIQVSKTKIKG-NYDGASSLEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNV 1168
            TL+YGEVF+Q S  +I   +Y  A+SL      V+ G VVVAKNPCLHPGD+R LKAV+V
Sbjct: 729  TLEYGEVFVQYSNNRISSLSYGSANSL------VVTGKVVVAKNPCLHPGDVRVLKAVDV 782

Query: 1167 PGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPA 988
            P L HMVDC VFPQKG+RPHPNECSGSDLDGD+YFV WDP L+PP  E  EPM+Y     
Sbjct: 783  PALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPP--ETTEPMEYASVQP 840

Query: 987  IRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVD 808
            I L H+V IEE++EYF NY+LNDSLGIIANAH+V AD+EP KA++E C+ELA+L + AVD
Sbjct: 841  IVLYHDVEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPAKAKAEPCIELAKLFSIAVD 900

Query: 807  FAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRR 628
            F KTG PA +P  L  +EYPDFMEK  K  Y+S +++GKL+R+       D  +   +  
Sbjct: 901  FPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSNNVIGKLFREIQGIPSRDGSITSFTLE 960

Query: 627  VCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGT 448
            V K +YD   E++GF D++ +A  HK+ YD KL  LM YYG++NE+EI+SGNI   S+ +
Sbjct: 961  VAKKSYDPDMEFDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKNESEILSGNIMRMSK-S 1019

Query: 447  INEKKKHSDRKDKILMAVEALRTEARGWF-DESCKLHHKS---FALASAWYHVTYHSSYW 280
             N+++      D I MAV +LR EAR WF D++  +   S   +A ASAWY+VTYH SYW
Sbjct: 1020 FNKRRD----GDAINMAVRSLRKEARSWFNDDATGVDSGSVDAYAKASAWYYVTYHHSYW 1075

Query: 279  SKGN-------LISFPWIRYDLILKTKR 217
               N        +SFPW  Y L+++ K+
Sbjct: 1076 GSYNEGMKRDHFLSFPWCVYHLLVQIKK 1103


>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
            gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
            2 isoform 1 [Theobroma cacao]
          Length = 1149

 Score =  795 bits (2053), Expect = 0.0
 Identities = 410/799 (51%), Positives = 565/799 (70%), Gaps = 9/799 (1%)
 Frame = -2

Query: 2562 LSELFKSMTTCLQPNRWLQSRL-YELKNTNPKQLNSLIVSPSKDLMQFYRVLVTPSKVYF 2386
            L +  K ++TC  P  +++  L    +N   + L+S       ++M  +R LVTPSK+Y 
Sbjct: 334  LQKFHKLLSTCYNPVSFVKENLPVSERNFQSRPLSSFKRLIDHNVMSCHRALVTPSKIYC 393

Query: 2385 IGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWRTNVY 2206
            +GPEL  SN V ++F+++ASDF+RVSFV+ED G+L ANA++  ++    I  +P+RT +Y
Sbjct: 394  LGPELETSNYVVKNFAEYASDFMRVSFVEEDWGKLSANAISTSVQL--GIFSKPFRTKIY 451

Query: 2205 ERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFEDIRNV 2026
             RI+++L +GI I +KRFEFLAFS+SQLR NSVWMF+S+  +TAE +R+WMG F+ IR+V
Sbjct: 452  HRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVTAEDVREWMGCFKKIRSV 511

Query: 2025 AKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARRIAKR 1846
            +K AARMGQ FSSS  T +V   +V  I DIEVT+ G+ YCFSDGIGKIS   AR +A++
Sbjct: 512  SKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKISLPFAREVAQK 571

Query: 1845 CGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPLPCYL 1666
            CGL+ TPSAFQIRY GYKGVVAVD  S+ K+SLR SM KF S  R L+V  WS+ +PC+L
Sbjct: 572  CGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMSLRGSMHKFESKIRMLNVTKWSESMPCFL 631

Query: 1665 NREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDSK-ILIEMLS 1489
            NREI+ LLSTLG+ DE+F++LQ++++    QML N E A+D+L  +   DS+ IL++ML 
Sbjct: 632  NREIVTLLSTLGIKDEAFETLQQEQLHLLGQMLTNREAALDVLQSLCGADSQNILVKMLL 691

Query: 1488 SGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVFIQVS 1309
             G  P+ EP+L+ ML A     LS+LK +CRI+VP+G VL+GCLDET TL+YG+V++++S
Sbjct: 692  QGYEPNVEPYLSMMLLANHVSLLSDLKCRCRIYVPKGQVLVGCLDETATLNYGQVYVRLS 751

Query: 1308 KTKIKGNYDGASSLEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVH--MVDC 1141
              K +  +   +   +++  T ++ G VVV KNPCLHPGD+R L+AV    L    +VDC
Sbjct: 752  IKKAELEHADQNFFHKVDEKTAIVIGKVVVTKNPCLHPGDVRVLEAVYEAELEDKGLVDC 811

Query: 1140 AVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTG-RPAIRLDHNVT 964
             VFPQKG RPHPNECSG DLDGD +F+SWD  L+P   + + PMDYTG RP I +DH VT
Sbjct: 812  LVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIP--CQTDAPMDYTGSRPRI-MDHEVT 868

Query: 963  IEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAPA 784
            +EEIQ++FV+YM+ND+LG I+ AH+VHADREP KARSEKCLELA LH+ AVDFAKTGAPA
Sbjct: 869  LEEIQKFFVDYMINDTLGAISTAHLVHADREPDKARSEKCLELATLHSMAVDFAKTGAPA 928

Query: 783  EMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINYDK 604
            EMP  L PRE+PDFM++  KPMY S  +LGKLYR + +   ++    + S+++ +  YD 
Sbjct: 929  EMPRSLKPREFPDFMQRVDKPMYASLGVLGKLYRATINSTVQERSKFVWSKKMAEALYDH 988

Query: 603  SFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKKHS 424
              E  GF+  L  A+ HK  Y+ K++ LM YY V++E EI++GN+R  +     + +++ 
Sbjct: 989  DLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVESEDEILTGNMRNKATFLQRDNRRYG 1048

Query: 423  DRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSYW--SKGNLISFPW 250
            D KD+IL++++ L+ EAR  F+ SCK+      LASAWYHVTYH +Y   S  + +SFPW
Sbjct: 1049 DMKDRILLSMKNLQREARERFENSCKVGEHQ-RLASAWYHVTYHPNYCQESMKSCLSFPW 1107

Query: 249  IRYDLILKTKRYNDTKIQK 193
            I  D++LK K  N  +IQ+
Sbjct: 1108 IVGDILLKIKSVNSREIQR 1126


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  794 bits (2051), Expect = 0.0
 Identities = 418/826 (50%), Positives = 558/826 (67%), Gaps = 17/826 (2%)
 Frame = -2

Query: 2619 EFFNVLTNPNYSPLH-INIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVSP 2443
            + F  L +PN  P+  I  AL +L+     C +P++W   + Y+   T+     S ++S 
Sbjct: 302  DIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQ-YKKYLTSGNPPRSPVLSL 360

Query: 2442 SKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALT 2263
               L+  Y+V +TP KV+F GPE+N SNRV R + +   +F+RVSFVDE+L ++H+  ++
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVS 420

Query: 2262 VKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKY 2083
             +  +  ++     RT +Y RI++ L NGI I +K+FEFLAFSSSQLRENS WMF+S   
Sbjct: 421  PRTSSRNELR----RTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLG 476

Query: 2082 LTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYC 1903
            LTA  IR WMG+F  IRNVA+YAAR+GQSF SS  T  V  HE+  I DIEV+  G +Y 
Sbjct: 477  LTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYL 536

Query: 1902 FSDGIGKISSKMARRIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKF 1726
            FSDGIGKIS++ AR++A +CG    TPSAFQIRYAGYKGVVAVDPTS  KLSLR SM K+
Sbjct: 537  FSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKY 596

Query: 1725 NSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAI 1546
             S+N  LDVL  SK  PC+LNR++I LLSTLGVPD  F+  QR+ V + + ML +   A 
Sbjct: 597  ESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQ 656

Query: 1545 DILHLMSD-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVL 1369
            + L LMS   ++ IL EML  G  P +EPFL+ MLQ FR   L EL++K RIF+P G  +
Sbjct: 657  EALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 716

Query: 1368 IGCLDETRTLDYGEVFIQVSKTKIKGNYDGASSLEEL---ETHVIEGDVVVAKNPCLHPG 1198
            +GCLDETRTL++G+VF++ S ++ +  YD +    E    + ++I+G VVVAKNPCLHPG
Sbjct: 717  MGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPG 776

Query: 1197 DIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPE 1018
            D+R LKAV+VP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P ++   
Sbjct: 777  DLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI-- 834

Query: 1017 EPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLE 838
             PMDYT  P ++LDH+VTIEE++EYF NY++NDSLG+IANAH  HAD+E LKA SE C+E
Sbjct: 835  SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894

Query: 837  LARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEE 658
            LAR  + AVDF KTG PAE+P  L  REYPDFMEK  KP YES +++GKL+R+  D    
Sbjct: 895  LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954

Query: 657  DPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIIS 478
               +   +  V +  YD   E +GF+D++ +A  +KS YD KL  LM+YYG++ EAE++S
Sbjct: 955  TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014

Query: 477  GNIRMPSRGTINEKKKHSDRKDKILMAVEALRTEARGWFDE-SCKLHHKS---FALASAW 310
            G+    S+    ++       + I MAV +L+ EAR WF+E    L  ++    A ASAW
Sbjct: 1015 GSFMKMSKSFTKKRD-----AEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAW 1069

Query: 309  YHVTYHSSYW-------SKGNLISFPWIRYDLILKTKRYNDTKIQK 193
            YHVTYH +YW       ++ + +SFPW  YD +++ KR N  +I++
Sbjct: 1070 YHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRR 1115


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score =  787 bits (2032), Expect = 0.0
 Identities = 419/821 (51%), Positives = 548/821 (66%), Gaps = 15/821 (1%)
 Frame = -2

Query: 2634 PTLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWL--QSRLYELKNTNPKQLN 2461
            P L   F+ ++       ++I+ AL +L+     C +P++WL  Q + Y     NP    
Sbjct: 297  PALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNP---G 353

Query: 2460 SLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRL 2281
            S ++S    L+   RV +TPS+VYF GPE+N SNRV RHF D   +F+R++FVDE+L ++
Sbjct: 354  SPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKI 413

Query: 2280 HANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWM 2101
            H+           D+L R   T +Y RI++ L NGI I +K+FEFLAFSSSQLRENS WM
Sbjct: 414  HST----------DLLTRNRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWM 463

Query: 2100 FSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTT 1921
            F+S + LTA  IR WMG F  IRNVAKYAAR+GQSFSSS  T  V + E+  I+D+E+  
Sbjct: 464  FASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKR 523

Query: 1920 KGVKYCFSDGIGKISSKMARRIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLR 1744
             G+ Y FSDGIGKIS+K A+++A +C L+  TPSAFQIR  G+KGVVAVDPTS  KLSLR
Sbjct: 524  DGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLR 583

Query: 1743 PSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLE 1564
             SM K+ S+N  LDVL WSK  PC+LNR++I LLSTLGVPD +F+  QR+ V + N +L 
Sbjct: 584  GSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILT 643

Query: 1563 NEENAIDILHLMSD-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFV 1387
            +   A + L LMS   ++ IL EML  G  P +EPFL+ MLQ FR   L EL++K RIFV
Sbjct: 644  DPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFV 703

Query: 1386 PRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGASSLEELETHVIEGDVVVAKNPCL 1207
              G  ++GCLDETRTLDYG+VF+QVS ++ +  +            +++G VVVAKNPCL
Sbjct: 704  ANGRSMMGCLDETRTLDYGQVFVQVSGSRSEQRF------------IVQGKVVVAKNPCL 751

Query: 1206 HPGDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKK 1027
            HPGD+R L AVNVP L HMVDC VFPQKG+RPHPNECSGSDLDGD+YFV WDP L+P K+
Sbjct: 752  HPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQ 811

Query: 1026 EPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEK 847
             P  PMDY+  P   L+H VTIEE++EYF NY++NDSLGIIANAH V ADREP KA S +
Sbjct: 812  IP--PMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSE 869

Query: 846  CLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDR 667
            C  LA+L + AVDF KTG PAE+P  L  +EYPDFMEK  KP Y+S +++GKL+R+  D 
Sbjct: 870  CKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDL 929

Query: 666  MEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAE 487
               +  +   +R   +  YD   E +G++D++ +A  HKS YD KL  LM+YYG++ EAE
Sbjct: 930  APNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAE 989

Query: 486  IISGNIRMPSRGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCK-LHHKS---FALA 319
            I+SG I   SR    ++       + I +AV +LR EAR WF+E    L  ++   +A A
Sbjct: 990  ILSGGIMKMSRSFTKQRD-----AEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKA 1044

Query: 318  SAWYHVTYHSSYW-------SKGNLISFPWIRYDLILKTKR 217
            SAWYHVTYH SYW       ++ + +SFPW  YD ++  K+
Sbjct: 1045 SAWYHVTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKK 1085


>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
          Length = 1118

 Score =  786 bits (2029), Expect = 0.0
 Identities = 400/796 (50%), Positives = 553/796 (69%), Gaps = 6/796 (0%)
 Frame = -2

Query: 2571 NIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVSPSKDLMQFYRVLVTPSKV 2392
            N+ L +L K  TTC  P  +L+ +L+ L+  +  + +        ++M  +RVL+TPSK+
Sbjct: 325  NVLLEKLHKRKTTCYDPLSFLKMQLHVLERNHKSRPSPYKRLMEHNVMSCHRVLITPSKI 384

Query: 2391 YFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWRTN 2212
              +GPEL +SN V ++F+ +ASDF+RV+FVDED  +L ANA++  +  +Q I  +P RT 
Sbjct: 385  CCLGPELEKSNYVVKNFAAYASDFMRVTFVDEDWSKLPANAISTSI--QQGIFAKPHRTG 442

Query: 2211 VYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFEDIR 2032
            +Y R+++IL +GI I  KRFEFLAFS+SQLR +SVWMFSS+  + AE IR+WMG F  IR
Sbjct: 443  IYHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSNDNVKAEDIREWMGCFSKIR 502

Query: 2031 NVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARRIA 1852
            +++K AARMGQ FSSS  T +V   +V  I D+E ++ GV YCFSDGIGKIS   AR++A
Sbjct: 503  SISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVETSSDGVTYCFSDGIGKISLSFARKVA 562

Query: 1851 KRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPLPC 1672
            ++CGLD TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR L+V  WS  +PC
Sbjct: 563  QKCGLDQTPSAFQIRYGGYKGVIAVDCRSFRKLSLRSSMLKFESKNRMLNVTKWSDAMPC 622

Query: 1671 YLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDSK-ILIEM 1495
            YLNREII LLSTLGV DE+F++LQ ++++   +M      A+++   ++  DSK  L++M
Sbjct: 623  YLNREIISLLSTLGVKDETFEALQEEQLRLLGKMRTERGAALNVFERLNGADSKNTLVKM 682

Query: 1494 LSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVFIQ 1315
            L  G  P++EP+L+ MLQA+ + HLS+LKS+CRIFVP+G VL+GCLDET  LDYG+V+++
Sbjct: 683  LLHGYEPNAEPYLSMMLQAYYENHLSDLKSRCRIFVPKGRVLVGCLDETGNLDYGQVYVR 742

Query: 1314 VSKTKIKGNYDGASSLEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVN--VPGLVHMV 1147
            ++ TK +      S  ++++  T V+ G VVV KNPCLHPGD+R L AV   V    +MV
Sbjct: 743  ITMTKAEQEMGDQSFFQKVDETTLVVTGKVVVTKNPCLHPGDVRVLDAVYDVVLEEKNMV 802

Query: 1146 DCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHNV 967
            DC +FPQKG RPHPNECSG DLDGDL+F+SWD  LVP    P  PMDY+ R    +DH V
Sbjct: 803  DCLIFPQKGERPHPNECSGGDLDGDLFFISWDKDLVPSHTVP--PMDYSARRPRIMDHTV 860

Query: 966  TIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAP 787
            T+EEIQ++FV+YM+ND+LG I+ AH+VHAD EP KA + KCL+LA LH+ AVDFAKTGAP
Sbjct: 861  TLEEIQKFFVDYMINDNLGAISTAHLVHADHEPDKALNPKCLQLADLHSMAVDFAKTGAP 920

Query: 786  AEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINYD 607
            AEM   L P+E+PDFME+  KPMY S   LGKLYR     + ++   L+ S ++ +  YD
Sbjct: 921  AEMSRTLKPKEFPDFMERVDKPMYISNGALGKLYRAVVGSVLQEKTNLVWSEQIAEAAYD 980

Query: 606  KSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKKH 427
            +  E +G +  L+ A+ H+  Y  K+  +M YYG   E EI++GN+R  +     + +++
Sbjct: 981  QDLEVDGLESVLEVAKGHRDMYIEKMRTMMNYYGAVTEDEILTGNLRNRAAYLQRDNRRY 1040

Query: 426  SDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSYWSKG-NLISFPW 250
             D KD+I ++++ L+ EA+G F+ SC +      +ASAWYHVTYH SY+ +  N +SFPW
Sbjct: 1041 GDMKDRISLSLKNLQKEAKGLFESSCPVSEHQ-RMASAWYHVTYHPSYFQQDMNCLSFPW 1099

Query: 249  IRYDLILKTKRYNDTK 202
            I  D++L  K  N+ +
Sbjct: 1100 IVGDILLNIKALNNPR 1115


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  786 bits (2029), Expect = 0.0
 Identities = 418/819 (51%), Positives = 548/819 (66%), Gaps = 13/819 (1%)
 Frame = -2

Query: 2634 PTLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSL 2455
            P L   F+ ++       ++I+ AL +L+     C +P+RWL    Y+  + + K   S 
Sbjct: 297  PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEE-YKNFSRSRKYQGSP 355

Query: 2454 IVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHA 2275
             +S  + L+   RV +TPS+VYF GPE+N SNRV R F +   +F+R+SFVDE+L ++H+
Sbjct: 356  TISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHS 415

Query: 2274 NALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFS 2095
                       ++  R  RT +Y+RI++ L NGI I NKRFEFLAFSSSQLRENS WMF+
Sbjct: 416  T----------NVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFA 465

Query: 2094 SSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKG 1915
            S K LTA  IR WMGNF  IRNVAKYAAR+GQSFSSS  T  V + E++ I DIE+   G
Sbjct: 466  SRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDG 525

Query: 1914 VKYCFSDGIGKISSKMARRIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPS 1738
            +KY FSDGIGKIS++ A+++A +C L   TPSAFQIR  G+KGVVA+DPTS  KLSLR S
Sbjct: 526  IKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKS 585

Query: 1737 MLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENE 1558
            M K+ S+N  LDVL WSK  PC+LNR++I LLSTLGVPD +F+  QR+ V + N +L + 
Sbjct: 586  MEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDP 645

Query: 1557 ENAIDILHLMSD-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPR 1381
              A + L LMS   ++ IL EML  G  P +EPFL+ ML+ FR   L EL++K RIFV +
Sbjct: 646  LEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQK 705

Query: 1380 GNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGASSLEELETHVIEGDVVVAKNPCLHP 1201
            G  ++GCLDETRTL+YG+VF+Q S ++ +  +            +++G V+VAKNPCLHP
Sbjct: 706  GRSMMGCLDETRTLNYGQVFVQFSGSRSERRF------------IVQGKVIVAKNPCLHP 753

Query: 1200 GDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEP 1021
            GD+R L+AVNVP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P K+  
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQI- 812

Query: 1020 EEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCL 841
             +PMDY+     +LDH VTIEEI+EYF NY++NDSLGII+NAH   ADREP KA S  CL
Sbjct: 813  -DPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCL 871

Query: 840  ELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRME 661
            ELA+L + AVDF KTG PAE+P  L  +EYPDFMEK  KP Y+S +++GKL+R+  +   
Sbjct: 872  ELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAP 931

Query: 660  EDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEII 481
             +  +   +R   +  YD   E EGF+D++ +A  HKS YD KL  LM YYGV+ EAEI+
Sbjct: 932  NECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEIL 991

Query: 480  SGNIRMPSRGTINEKKKHSDRKDKILMAVEALRTEARGWFDE-SCKLHHK---SFALASA 313
             G I   SR    ++       + I MAV +LR EAR WF+E   +L  +   ++A ASA
Sbjct: 992  GGGIMKMSRSFTKKRD-----AEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASA 1046

Query: 312  WYHVTYHSSYWSKGN-------LISFPWIRYDLILKTKR 217
            WY+VTYH SYW + N        +SFPW  YD +++ K+
Sbjct: 1047 WYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKK 1085


>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
          Length = 1131

 Score =  784 bits (2024), Expect = 0.0
 Identities = 403/796 (50%), Positives = 555/796 (69%), Gaps = 7/796 (0%)
 Frame = -2

Query: 2568 IALSELFKSMTTCLQPNRWLQSRLYEL-KNTNPKQLNSLIVSPSKDLMQFYRVLVTPSKV 2392
            + L +L K  + C  P  +++++L+ L +N     L+S       ++M  YR LVTP K+
Sbjct: 340  MVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKI 399

Query: 2391 YFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWRTN 2212
            Y +GPEL  SN V ++F+ +ASDF+RV+FV+ED  +L ANAL+  +  ++ I  +P+RT 
Sbjct: 400  YCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSI--QRGIFAKPYRTK 457

Query: 2211 VYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFEDIR 2032
            +Y RI+ IL +GI I +K +EFLAFS+SQLR NSVWMF+S+  ++AE +R+WMG F  I 
Sbjct: 458  IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVREWMGCFNKIH 517

Query: 2031 NVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARRIA 1852
            +V+K AARMGQ FSSS  T +V   +V  I D+EVT+ G  YCFSDGIGKIS   AR++A
Sbjct: 518  SVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVA 577

Query: 1851 KRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPLPC 1672
            ++CGL  TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR L+V  WS+ +PC
Sbjct: 578  QKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPC 637

Query: 1671 YLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDSK-ILIEM 1495
            +LNREII LLSTLGV D+ F+++Q+ ++    +ML N E A+D+L  ++  DSK IL++M
Sbjct: 638  FLNREIISLLSTLGVKDDVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM 697

Query: 1494 LSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVFIQ 1315
            L  G  P+ EP+L+ ML +  +  LS+LKS+CRI+VP+G +LIGC DET  L+YG+VF++
Sbjct: 698  LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVR 757

Query: 1314 VSKTKIKGNYDGASSLEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVH--MV 1147
            V+ T+ +      S    ++  T +++G V+V KNPCLHPGD+R L+AV    L     V
Sbjct: 758  VTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817

Query: 1146 DCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHNV 967
            DC +FPQKG RPHPNECSG DLDGD++F+SWD  L+P + EP  PMDYTGR +  +DH+V
Sbjct: 818  DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDYTGRRSRIMDHDV 875

Query: 966  TIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAP 787
            T+EEI ++FV+YM+ND+LG I+ AH+VHADR+P KARS KCL LA LH+ AVDFAKTGAP
Sbjct: 876  TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935

Query: 786  AEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINYD 607
            AEMPL L P+E+PDFME+E KP Y S  +LGKLYR + D + +     + S ++ + +YD
Sbjct: 936  AEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYD 995

Query: 606  KSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKKH 427
               E +GF+  L  AE HK  Y+ ++ ALM YYG   E EI++GN+R  +     + +++
Sbjct: 996  HDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRY 1055

Query: 426  SDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSYW-SKGNLISFPW 250
             D KD+IL++ + L+ EA+ WF  SCK  ++   LASAWYHVTY  SY   +  L+SFPW
Sbjct: 1056 GDMKDRILLSAKNLQNEAKEWFGSSCK-ENEHPQLASAWYHVTYSPSYCKERMALLSFPW 1114

Query: 249  IRYDLILKTKRYNDTK 202
            I  D++L  K  N  K
Sbjct: 1115 IVGDILLNIKSVNSRK 1130


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  783 bits (2021), Expect = 0.0
 Identities = 418/819 (51%), Positives = 548/819 (66%), Gaps = 13/819 (1%)
 Frame = -2

Query: 2634 PTLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSL 2455
            P L   F+ ++       ++I+ AL +L+     C +P+RWL    Y+  + + K   S 
Sbjct: 297  PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEE-YKNFSRSRKYQGSP 355

Query: 2454 IVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHA 2275
             +S  + L+   RV +TPS+VYF GPE+N SNRV R F +   +F+R+SFVDE+L ++H+
Sbjct: 356  TISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHS 415

Query: 2274 NALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFS 2095
                       ++  R  RT +Y+RI++ L NGI I NKRFEFLAFSSSQLRENS WMF+
Sbjct: 416  T----------NVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFA 465

Query: 2094 SSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKG 1915
            S K LTA  IR WMGNF  IRNVAKYAAR+GQSFSSS  T  V + E++ I DIE+   G
Sbjct: 466  SRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDG 525

Query: 1914 VKYCFSDGIGKISSKMARRIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPS 1738
            +KY F DGIGKIS++ A+++A +C L   TPSAFQIR  G+KGVVA+DPTS  KLSLR S
Sbjct: 526  IKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKS 585

Query: 1737 MLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENE 1558
            M K+ S+N  LDVL WSK  PC+LNR++I LLSTLGVPD +F+  QR+ V + N +L + 
Sbjct: 586  MEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDP 645

Query: 1557 ENAIDILHLMSD-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPR 1381
              A + L LMS   ++ IL EML  G  P +EPFL+ ML+ FR   L EL++K RIFV +
Sbjct: 646  LEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQK 705

Query: 1380 GNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGASSLEELETHVIEGDVVVAKNPCLHP 1201
            G  ++GCLDETRTL+YG+VF+Q S ++ +  +            +++G V+VAKNPCLHP
Sbjct: 706  GRSMMGCLDETRTLNYGQVFVQFSGSRSERRF------------IVQGKVIVAKNPCLHP 753

Query: 1200 GDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEP 1021
            GD+R L+AVNVP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P K+  
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQI- 812

Query: 1020 EEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCL 841
             +PMDY+     +LDH VTIEEI+EYF NY++NDSLGII+NAH   ADREP KA S  CL
Sbjct: 813  -DPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCL 871

Query: 840  ELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRME 661
            ELA+L + AVDF KTG PAE+P  L  +E+PDFMEK  KP Y+S +++GKL+R+  +   
Sbjct: 872  ELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAP 931

Query: 660  EDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEII 481
             +  + + +R   K  YD   E EGF D++ +A  +KS YD KL  LM YYGV+ EAEI+
Sbjct: 932  NECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEIL 991

Query: 480  SGNIRMPSRGTINEKKKHSDRKDKILMAVEALRTEARGWFDE-SCKLHHK---SFALASA 313
            SG I   SR    ++   S     I MAV +LR EAR WF+E   +L  +   ++A ASA
Sbjct: 992  SGGIMKMSRSFTKKRDAES-----ISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASA 1046

Query: 312  WYHVTYHSSYWSKGN-------LISFPWIRYDLILKTKR 217
            WY+VTYH SYW + N        +SFPW  YD +++ K+
Sbjct: 1047 WYYVTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKK 1085


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  781 bits (2016), Expect = 0.0
 Identities = 416/824 (50%), Positives = 558/824 (67%), Gaps = 18/824 (2%)
 Frame = -2

Query: 2634 PTLTCEFFNVLTNPNYSPLH-INIALSELFKSMTTCLQPNRWL--QSRLYELKNTNPKQL 2464
            P L  +F+  L +P   P   I  AL +++ S   C +P +WL  Q + Y     +P+  
Sbjct: 301  PALDGDFYR-LVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPR-- 357

Query: 2463 NSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGR 2284
             S  +S    L+   RV +TP KVYF GPE+N SNRV RHF +H  +F+RVSFVDE+L +
Sbjct: 358  -SPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDK 416

Query: 2283 LHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVW 2104
            L +  L+ + + +        +T +Y RI++IL NGI + +K+FEFLAFSSSQLRENS+W
Sbjct: 417  LFSTDLSSRSQNK--------KTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLW 468

Query: 2103 MFSSSKY-LTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIE- 1930
            MF+ ++   TA +IRKWMGNF  IRNVAKYAAR+GQSF SS  T  V   EV  I D++ 
Sbjct: 469  MFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKK 528

Query: 1929 VTTKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLS 1750
            +T  G +Y FSDGIGKIS + A+++AK+CG D TPSAFQIRY GYKGVVAVDP S +KLS
Sbjct: 529  LTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLS 588

Query: 1749 LRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQM 1570
            LR SM K++SDN  LDVL  SK  PCYLNR++I LLSTLG+ D+ F+  QR+ V + N +
Sbjct: 589  LRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTI 648

Query: 1569 LENEENAIDILHLMSDRD-SKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRI 1393
            L +   A ++L LMS  + + +L EML  G  P+ EPFL+ MLQ FR   L EL+ K RI
Sbjct: 649  LTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRI 708

Query: 1392 FVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGASSLEELETHVIEGDVVVAKNP 1213
            F+P+G  ++GCLDETRTL+YG+VF+Q S  +++   D   S +  + ++++G VVVAKNP
Sbjct: 709  FIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNP 768

Query: 1212 CLHPGDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPP 1033
            CLHPGD+R L+AV+VP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WD  L+P 
Sbjct: 769  CLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPS 828

Query: 1032 KKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARS 853
            +  P +PMDYT    + LDH+V IEE++EYF NY++NDSLGIIANAH V AD+E LKA S
Sbjct: 829  R--PIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMS 886

Query: 852  EKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSY 673
            ++C++LARL + AVDF KTG PA +P  L  +EYPDFMEK  KP Y+S +++GKL+R+  
Sbjct: 887  DQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVK 946

Query: 672  DRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNE 493
            +       +   ++ V + +YD   E +GF D++ +A  HK+ YD KL  LM YYG++ E
Sbjct: 947  EISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTE 1006

Query: 492  AEIISGNIRMPSRGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKS-----F 328
            AEI+ GNI   S+ + N+++      + I MAV +LR EAR WF+E+      S     +
Sbjct: 1007 AEILGGNIMKMSK-SFNKRRD----AEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVY 1061

Query: 327  ALASAWYHVTYHSSYW-------SKGNLISFPWIRYDLILKTKR 217
            A ASAWYHVTYH SYW       ++ + +SF W  Y L+++ K+
Sbjct: 1062 AKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKK 1105


>ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
            distachyon]
          Length = 1140

 Score =  780 bits (2013), Expect = 0.0
 Identities = 416/807 (51%), Positives = 556/807 (68%), Gaps = 10/807 (1%)
 Frame = -2

Query: 2583 PLHINIALSE-LFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVSPSKDLMQFYRVLV 2407
            PLHI+  + E + K  +TC +P ++++S   ELK T+   L+S      K LM+ YR+ +
Sbjct: 323  PLHISRRIFEKMSKLESTCYEPLQFIES---ELKLTHNALLSSKREGEGK-LMRCYRIHI 378

Query: 2406 TPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILER 2227
            TPSK+Y +GPE   SN V +H S++ASDF+RV+FVDED  +L  NA++ ++  EQ    +
Sbjct: 379  TPSKIYCLGPEEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARI--EQGFFSQ 436

Query: 2226 PWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGN 2047
            P++T +Y RI++IL  G  I  K+FEFLAFS+SQLRE SVWMF+S+  L AE IR+WMG+
Sbjct: 437  PFKTGLYYRILSILKEGFIIGPKKFEFLAFSASQLREGSVWMFASNDSLNAESIRRWMGH 496

Query: 2046 FEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKM 1867
            FE+IR+V+K AARMGQ FSSS  T  V+  +V  I DIEVTT   KY FSDGIGK+S + 
Sbjct: 497  FEEIRSVSKCAARMGQLFSSSRQTVEVRPWDVEEIPDIEVTTNNTKYIFSDGIGKMSVRF 556

Query: 1866 ARRIAKRCGLDPT--PSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLN 1693
            AR IA R GLD T  PSAFQIR+ GYKGV+AVDP+S+  LSLRPSM KF SD R L++ +
Sbjct: 557  AREIAYRIGLDHTNPPSAFQIRFGGYKGVIAVDPSSFRNLSLRPSMRKFESDCRMLNITS 616

Query: 1692 WSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDS 1513
            WSK  PCY+NREII LLSTLG+ DE F+ +Q+D++++ ++ML N+E A+ +L  +   ++
Sbjct: 617  WSKSQPCYVNREIISLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVALSVLGKIGSAET 676

Query: 1512 KILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 1333
            K   +ML  G  P SEP+L  +L+A +D  L++++SK +I VP+G VL+GCLDET  L Y
Sbjct: 677  KTAADMLLQGYEPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGKLKY 736

Query: 1332 GEVFIQVSKT--KIKGNYDGASSLEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1159
            G+V+I+++K   + K N     S ++ +T  + G V V+KNPCLHPGD+R L+AV  PGL
Sbjct: 737  GQVYIRITKNNKEQKENEQPYFSEDDGKTVTLVGKVAVSKNPCLHPGDVRVLEAVYDPGL 796

Query: 1158 --VHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTG-RPA 988
                +VDC VFPQ+G RPHPNECSG DLDGDLYFV+WD  L+P K   + PMDYTG RP 
Sbjct: 797  HAKKLVDCVVFPQRGERPHPNECSGGDLDGDLYFVTWDDKLIPEK--ADAPMDYTGARPR 854

Query: 987  IRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVD 808
            I +DH VT+EEIQ++ VNYML+DSLG I+NAH++HADR+P+KARS +CL+LA LH+ AVD
Sbjct: 855  I-MDHVVTLEEIQQHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLQLAALHSMAVD 913

Query: 807  FAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRR 628
            FAKTGAPAE+P  L PRE+PDFME+  KPMY S  +LGKLYR +  RME   H L  S+ 
Sbjct: 914  FAKTGAPAELPRSLRPREFPDFMERWDKPMYISNGVLGKLYRAAVSRMESS-HALA-SQV 971

Query: 627  VCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGT 448
                 YD+     GF++ L++AE H   Y  KL  LM YYG ++E EI++GNIR      
Sbjct: 972  QSSPTYDRELAVPGFEEFLEDAEKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRNRLLYL 1031

Query: 447  INEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSYW--SK 274
              ++K++SD KD+I  +V AL  E RGWF    K   ++  +ASAWY V YH  +    K
Sbjct: 1032 RKDRKRYSDMKDRIFDSVNALHEEVRGWFKNCLKAEEEASRVASAWYRVAYHPDHRRPEK 1091

Query: 273  GNLISFPWIRYDLILKTKRYNDTKIQK 193
                SFPWI  D +L  K     + +K
Sbjct: 1092 KQFWSFPWIICDKLLAIKATKSNRCRK 1118


>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
          Length = 1119

 Score =  779 bits (2012), Expect = 0.0
 Identities = 403/800 (50%), Positives = 543/800 (67%), Gaps = 13/800 (1%)
 Frame = -2

Query: 2562 LSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIVS-PSKDLMQFYRVLVTPSKVYF 2386
            L ++ K  +TC +P  ++++RL+ L   N  QL+S      +  +M  +RVLVTPSK+Y 
Sbjct: 328  LQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRLVNHSMMSVHRVLVTPSKIYC 387

Query: 2385 IGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWRTNVY 2206
            +GPEL  SN + ++F++HASDF+RV+FV+ED G+L  NA  V +  EQ I  +P+RT +Y
Sbjct: 388  LGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNA--VSMSVEQGIFAKPYRTKIY 445

Query: 2205 ERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFEDIRNV 2026
             RI++IL  GI I  KRF FLAFS+SQLR NSVWMF+S++Y+ AE IR+WMG F  IR++
Sbjct: 446  HRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVKAEDIREWMGCFNKIRSI 505

Query: 2025 AKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARRIAKR 1846
            +K AARMGQ FS+S  T  V+   V  + DIEVT+ GV YCFSDGIGKIS   AR++A++
Sbjct: 506  SKCAARMGQLFSTSVQTMEVQLQHVEILPDIEVTSDGVSYCFSDGIGKISQAFARQVAQK 565

Query: 1845 CGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPLPCYL 1666
            CGL+ TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR L++  WS  +PCYL
Sbjct: 566  CGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYL 625

Query: 1665 NREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRD-SKILIEMLS 1489
            NREI+ILLSTLGV D++ + L  + ++   +ML   E A+D+L  M   D  KIL+ ML 
Sbjct: 626  NREIVILLSTLGVEDKALEDLLDNHLRLLGKMLTTNEAALDVLESMGGGDVKKILMRMLL 685

Query: 1488 SGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVFIQVS 1309
             G +P+ EP+L+ MLQ+  +  +S+L+S+CRIF+P+G +L+GCLDET  L YGEV+++++
Sbjct: 686  QGYAPNREPYLSMMLQSHFENQISDLRSRCRIFIPKGRILVGCLDETGILKYGEVYVRIT 745

Query: 1308 KTKIK---GNYDGASSLEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVH--MVD 1144
             TK +   G  +    ++E  T V+ G VVV KNPCLHPGD+R L+AV    L     VD
Sbjct: 746  MTKAELQNGQQNFFQKVDE-TTAVVRGKVVVTKNPCLHPGDVRVLEAVYEVTLEEKTWVD 804

Query: 1143 CAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHNVT 964
            C +FPQ G RPHPNECSG DLDGDLYF+ WD  L+P   +   PMDYTGR    +DH VT
Sbjct: 805  CIIFPQNGERPHPNECSGGDLDGDLYFICWDESLIP--HQTVTPMDYTGRRPRIMDHEVT 862

Query: 963  IEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAPA 784
            +EEIQ +FV+YM++D+LG I+ AH+VHADREP KA + KCL+LA LH+ AVDFAKTGA A
Sbjct: 863  LEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLATLHSMAVDFAKTGAAA 922

Query: 783  EMPLRLIPREYPDFMEKEGKPMYESTSILGKLYR---DSYDRMEEDPHVLMDSRRVCKIN 613
            EMP  L PRE+PDFME+  KPMY S  +LGKLYR    SY R   D    + + R  +  
Sbjct: 923  EMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVIKSYIRRNSDD---LSTDRAIQDA 979

Query: 612  YDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKK 433
            YD     EG++  ++ A+ HK  Y   + +L+ YYG + E EI++GN+R  S     + +
Sbjct: 980  YDHDLLVEGYEAFIETAKTHKEMYLDSMNSLLNYYGAEKEVEILTGNLRQKSVYLQRDNR 1039

Query: 432  KHSDRKDKILMAVEALRTEARGWFDESCKL--HHKSFALASAWYHVTYHSSY-WSKGNLI 262
            ++ + KD+IL++ ++L  E +GWF   C    H K   L SAWYHVTYH SY     N +
Sbjct: 1040 RYFELKDRILVSAKSLHKEVKGWFSGCCTEDDHQK---LVSAWYHVTYHPSYCHESANCL 1096

Query: 261  SFPWIRYDLILKTKRYNDTK 202
             FPW+  D++L  K +N  K
Sbjct: 1097 GFPWVVGDILLNIKSHNTRK 1116


>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
          Length = 1122

 Score =  779 bits (2012), Expect = 0.0
 Identities = 402/805 (49%), Positives = 558/805 (69%), Gaps = 14/805 (1%)
 Frame = -2

Query: 2568 IALSELFKSMTTCLQPNRWLQSRLYEL----KNTNPKQLNSLIVSPSKDLMQFYRVLVTP 2401
            +   +L K  +TC +P R+++++L+ L    K+  P     L      ++M  +R L+TP
Sbjct: 327  VIFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQKRLA---DNNIMSCHRALITP 383

Query: 2400 SKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKLKTEQDILERPW 2221
            SK+Y +GPEL  SN V +HF+ +ASDF+R++FV+ED  +L  NA++  L  ++ I  +P+
Sbjct: 384  SKIYCLGPELETSNHVVKHFASYASDFMRITFVEEDWSKLPINAVSTSL--QKGIFAKPF 441

Query: 2220 RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 2041
            RT++Y+R++ IL +GI I +KRFEFLAFS+SQLR NSVW+F+S+  + AE IR+WMG+F 
Sbjct: 442  RTDIYKRVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAEDIREWMGSFT 501

Query: 2040 DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 1861
            +IR+V+K AARMGQ FSSS  T  +   +V  I DIE+T+ G+ YCFSDGIGKIS   A+
Sbjct: 502  NIRSVSKCAARMGQLFSSSKQTFEMAPQDVDIIPDIELTSDGINYCFSDGIGKISLSFAK 561

Query: 1860 RIAKRCGLDPT--PSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWS 1687
            ++A++  LD +  PSAFQIRY GYKGV+AVD  S+ KLS+R SMLKF S NR L V  WS
Sbjct: 562  QLAQKLKLDQSRIPSAFQIRYGGYKGVIAVDRHSFRKLSMRNSMLKFESKNRMLCVTKWS 621

Query: 1686 KPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDSK- 1510
            + +PC+LNREII LLSTLGV DE+  ++Q +++Q   +ML + E A+D+L  +S  DS+ 
Sbjct: 622  ESMPCFLNREIISLLSTLGVKDEALLAMQEEQLQLLGKMLTDREAALDVLESLSGADSRS 681

Query: 1509 ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYG 1330
            IL++ML+    P+SEP+L+ ML+A   + LS+LKS+CRIFVP+G VLIGCLDET  L+YG
Sbjct: 682  ILVKMLNGFYEPNSEPYLSMMLKAHYAYQLSDLKSRCRIFVPKGRVLIGCLDETGILNYG 741

Query: 1329 EVFIQVSKTKIKGNYDGASSLEELE----THVIEGDVVVAKNPCLHPGDIRKLKAVNVPG 1162
            +VF++++ TK K    G  +L+ ++    T +I G VVV KNPCLHPGDIR L A+    
Sbjct: 742  QVFVRITVTKTKEKI-GDENLQNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIYNEE 800

Query: 1161 LVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPA 988
            L    + DC VFPQKG RPHPNECSG DLDGDL+F+SWD  L+PP  + + PMDYTGR  
Sbjct: 801  LEEKGLRDCLVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPP--QTDNPMDYTGRRP 858

Query: 987  IRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVD 808
              +DH VT+EEI ++FV+YM+ND+LG I+ AH+VHADREP KARS KCLELA LH+ AVD
Sbjct: 859  RIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVD 918

Query: 807  FAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRR 628
            FAKTGAPAEMP  L PRE+PDFME+  KPMY S  +LGKLYR   +   +    ++ S +
Sbjct: 919  FAKTGAPAEMPRALKPREFPDFMERFDKPMYISNGVLGKLYRALVESTTQVRSNIVLSEK 978

Query: 627  VCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGT 448
              +  YD   E  GF+  L+ A  HK  Y  K+++LM +Y  + E E+++GN++  +   
Sbjct: 979  FAEEAYDHQLEVNGFEAFLETASSHKEMYAQKMSSLMSFYDAETEDEMLTGNLQNRASYL 1038

Query: 447  INEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSY-WSKG 271
              + +++ D KD+IL++V+ L+ EA+ WF+  C+ H     +ASAWYHVTYH  Y     
Sbjct: 1039 QRDNRRYGDMKDRILISVKDLQREAKEWFESDCQPHEYQL-MASAWYHVTYHPKYSHESS 1097

Query: 270  NLISFPWIRYDLILKTKRYNDTKIQ 196
              +SFPWI  D++L  K  N TK++
Sbjct: 1098 TFLSFPWIVGDILLHIKSVN-TKVE 1121


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  779 bits (2012), Expect = 0.0
 Identities = 417/817 (51%), Positives = 543/817 (66%), Gaps = 13/817 (1%)
 Frame = -2

Query: 2628 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYE-LKNTNPKQLNSLI 2452
            L   FF ++     +   I  AL +L+     C  P RWL  +  E LK     +  S+ 
Sbjct: 291  LNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSIT 350

Query: 2451 VSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHAN 2272
            +     L+   RVLVTP KVYF GPE+N SNRV R++S+   +F+RVSFVDE+  ++H+ 
Sbjct: 351  LDDG--LVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHST 408

Query: 2271 ALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSS 2092
             L  +  T   +     RT++Y RI++ L NG  I +K+FEFLAFSSSQLR+NSVWMF+S
Sbjct: 409  DLLPRASTGNGV-----RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFAS 463

Query: 2091 SKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGV 1912
               LTA  IR WMG F+ IRNVAKYAAR+GQSF SS  T  V  HEV  I D+  +  G 
Sbjct: 464  RPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGT 523

Query: 1911 KYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSML 1732
             Y FSDGIGKIS+  ARR+A +CGL  TPS FQIRY GYKGVVAVDP S  KLSLR SML
Sbjct: 524  NYIFSDGIGKISADFARRVAVKCGLQYTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSML 583

Query: 1731 KFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEEN 1552
            K+ S+N  LDVL WSK  PCYLNR+++ LLSTLGV D+ F+  Q + V + + +L +   
Sbjct: 584  KYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLK 643

Query: 1551 AIDILHLMS-DRDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGN 1375
            A + L LMS   ++ IL EML+ G  P +EPFL+ MLQ FR   L +L+++ RIF+P G 
Sbjct: 644  AQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGR 703

Query: 1374 VLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGASSLEELET----HVIEGDVVVAKNPCL 1207
             ++GCLDE+RTL+YG+VF+Q + T  +  Y+ +    +  +     ++EG+VVVAKNPCL
Sbjct: 704  TMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCL 763

Query: 1206 HPGDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKK 1027
            HPGDIR L+AV+VP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP LVPP++
Sbjct: 764  HPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQ 823

Query: 1026 EPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEK 847
               +PMDYT  P+ +LDH+VTIEE++EYF NY++NDSLGIIANAHVV ADREP  A S+ 
Sbjct: 824  --FQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 881

Query: 846  CLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDR 667
            C +LA+L + AVDF KTG PAE+P +L P+EYPDFMEK  KP Y S  ++GKL++   D+
Sbjct: 882  CKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDK 941

Query: 666  MEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAE 487
              +   +   +  V + +YD      GF+D++ EA  +KS YD+KL  LM YYG++ EAE
Sbjct: 942  TPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAE 1001

Query: 486  IISGNIRMPSRGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWY 307
            I+SG I   S+ T + +K      D I +AV +LR EAR WF     +     A ASAWY
Sbjct: 1002 ILSGGIMKASK-TFDRRKD----ADAIGVAVRSLRKEARTWFKRRSDI-DDMLAKASAWY 1055

Query: 306  HVTYHSSYW-------SKGNLISFPWIRYDLILKTKR 217
            HVTYH +YW        + + ISFPW  YD +++ K+
Sbjct: 1056 HVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKK 1092