BLASTX nr result

ID: Ephedra28_contig00013558 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00013558
         (684 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium ...    59   1e-06
ref|XP_641735.1| RNA polymerase II largest subunit [Dictyosteliu...    59   1e-06
emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharo...    59   1e-06
dbj|BAO20842.1| RNA polymerase II largest subunit, partial [Daph...    59   2e-06
gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia p...    59   2e-06
gb|EMT33557.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...    58   3e-06
ref|XP_001632039.1| predicted protein [Nematostella vectensis] g...    58   3e-06
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...    57   4e-06
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...    57   4e-06
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...    57   4e-06
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]     57   4e-06
dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus ...    57   4e-06
emb|CBY21018.1| unnamed protein product [Oikopleura dioica]            57   4e-06
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...    57   5e-06
dbj|BAO20841.1| RNA polymerase II largest subunit, partial [Proc...    57   5e-06
gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella...    57   5e-06
gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [...    57   5e-06
ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozy...    57   5e-06
dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma b...    57   5e-06
dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]     57   5e-06

>gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
          Length = 902

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P   PS    S S 
Sbjct: 789  PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSY 847

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 378
                            ++P+Y   SPSY  S P+ SPS   F
Sbjct: 848  SPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 889


>ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
            gi|166202448|sp|P35084.2|RPB1_DICDI RecName:
            Full=DNA-directed RNA polymerase II subunit rpb1;
            Short=RNA polymerase II subunit B1; AltName:
            Full=DNA-directed RNA polymerase III subunit A
            gi|60469758|gb|EAL67745.1| RNA polymerase II largest
            subunit [Dictyostelium discoideum AX4]
          Length = 1727

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P   PS    S S 
Sbjct: 1614 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSY 1672

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 378
                            ++P+Y   SPSY  S P+ SPS   F
Sbjct: 1673 SPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 1714


>emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
          Length = 1726

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S M+P+  P   PS    S S 
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPMSPSYSP-TSPSYSPTSPSY 1619

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                             +P+Y   SPSY  + PA SP+
Sbjct: 1620 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1657


>dbj|BAO20842.1| RNA polymerase II largest subunit, partial [Daphnia pulicaria]
          Length = 1764

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P+  P + PS    S S 
Sbjct: 1623 PSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SSPSYSPTSPSY 1681

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                            ++P+Y   SPSY  + P+ SPS
Sbjct: 1682 SPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1719


>gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
          Length = 1895

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P+  P + PS    S S 
Sbjct: 1645 PSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SSPSYSPTSPSY 1703

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                            ++P+Y   SPSY  + P+ SPS
Sbjct: 1704 SPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741


>gb|EMT33557.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1905

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +PT S   PT P + KP+SP  S + 
Sbjct: 1718 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPTYS---PTSPSY-KPTSPSYSPTS 1773

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                            ++P Y   SPSY  + P+ SPS
Sbjct: 1774 PA-----------YSPSSPGYCPTSPSYSPTSPSYSPS 1800


>ref|XP_001632039.1| predicted protein [Nematostella vectensis]
            gi|156219089|gb|EDO39976.1| predicted protein
            [Nematostella vectensis]
          Length = 1929

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P   PS    S S 
Sbjct: 1676 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSY 1734

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                             +P+Y   SPSY  S P+ SPS
Sbjct: 1735 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPS 1772



 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P +   SPQ     
Sbjct: 1725 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPQSPSYA 1784

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                             +P Y   SP+Y  + P+ SPS
Sbjct: 1785 SPSSPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPS 1822


>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1861

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = -2

Query: 680  GVPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSM 510
            G PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P +   SP   +
Sbjct: 1588 GSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPV 1647

Query: 509  SQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
               T               +PAY   SPSY  + P+ SP+
Sbjct: 1648 YSPT--------SPAYSPTSPAYSPTSPSYSPTSPSYSPT 1679


>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 2040

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = -2

Query: 680  GVPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSM 510
            G PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P +   SP   +
Sbjct: 1588 GSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPV 1647

Query: 509  SQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
               T               +PAY   SPSY  + P+ SP+
Sbjct: 1648 YSPT--------SPAYSPTSPAYSPTSPSYSPTSPSYSPT 1679


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Brachypodium distachyon]
          Length = 1862

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = -2

Query: 680  GVPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSM 510
            G PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P +   SP   +
Sbjct: 1590 GSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPV 1649

Query: 509  SQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
               T               +PAY   SPSY  + P+ SP+
Sbjct: 1650 YSPT--------SPAYSPTSPAYSPTSPSYSPTSPSYSPT 1681


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = -2

Query: 680  GVPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSM 510
            G PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P +   SP   +
Sbjct: 1588 GSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPV 1647

Query: 509  SQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
               T               +PAY   SPSY  + P+ SP+
Sbjct: 1648 YSPT--------SPAYSPTSPAYSPTSPSYSPTSPSYSPT 1679


>dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
          Length = 1792

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P   PS    S S 
Sbjct: 1663 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSY 1721

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                            ++P Y  +SPSY  + P+ SPS
Sbjct: 1722 SPTSPSYSPTSPSYSPSSPNYTPQSPSYSPTSPSYSPS 1759


>emb|CBY21018.1| unnamed protein product [Oikopleura dioica]
          Length = 928

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMS- 507
            PS S T+PS   T+P+Y   +PS + T+PSY P +P  +  +P   P   PSSP  S + 
Sbjct: 757  PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPSSPAYTPSSPKYSPTYSPSSPSYSPAS 816

Query: 506  -QETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
             + T               +P Y   SP+Y  S PA SP+
Sbjct: 817  PKYTGGDGGTPGSKAYSPTSPTYSPSSPNYSPSSPAYSPA 856


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
 Frame = -2

Query: 680  GVPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSM 510
            G P+ S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P   PS    S 
Sbjct: 1588 GSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSP 1646

Query: 509  SQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
            S                  +PAY   SPSY  + P+ SP+
Sbjct: 1647 SYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1686


>dbj|BAO20841.1| RNA polymerase II largest subunit, partial [Procambarus clarkii]
          Length = 1733

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P   PSSP  S + 
Sbjct: 1645 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYAPNYSPSSPGYSPTS 1704

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
             +              ++P Y   SPSY  + P  SP+
Sbjct: 1705 PS-----------YSPSSPQYSPASPSYSPTSPKYSPT 1731



 Score = 56.6 bits (135), Expect = 7e-06
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            P  S T+PS   T+PSY   +PS + T+PSY P +P+ S   PT P ++ P+SP  S + 
Sbjct: 1624 PQYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYS-PTSPSYSPTS 1679

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
             +              ++P Y   SPSY  S P  SP+
Sbjct: 1680 PSYSPTSPSYAPNYSPSSPGYSPTSPSYSPSSPQYSPA 1717


>gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
          Length = 1916

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+P+Y P +P+ S  +P+  P +   SPQ S S 
Sbjct: 1662 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPNYSPQ-SPSY 1720

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                             +P+Y   SPSY  + P+ SPS
Sbjct: 1721 SPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYSPS 1758


>gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
            nostochinearum]
          Length = 1852

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +PT      PSSP  S S 
Sbjct: 1705 PSYSPTSPSCSPTSPSYSPTSPSYSPTSPSYSPSSPSCSPASPTY----SPSSPSYSPS- 1759

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                             +P+Y   SPSY  S P+ SPS
Sbjct: 1760 -----------------SPSYSPSSPSYSPSSPSYSPS 1780


>ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
            gi|343766380|emb|CCD22371.1| hypothetical protein
            NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
          Length = 1729

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +PT  P   PS    S S 
Sbjct: 1555 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSP-TSPSYSPTSPSY 1613

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                             +P+Y   SPSY  + P+ SP+
Sbjct: 1614 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1651


>dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
          Length = 1907

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P   PS    S S 
Sbjct: 1662 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSY 1720

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 390
                            ++P Y   SPSY  + P+ SPS
Sbjct: 1721 SPTSPNYSPTSPSYSPSSPQYTPASPSYSPTSPSYSPS 1758


>dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
          Length = 1289

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
 Frame = -2

Query: 674  PSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 504
            PS S T+PS   T+PSY   +PS + T+PSY P +P+ S   PT P ++ P+SP  S + 
Sbjct: 1195 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYS-PTSPSYSPTS 1250

Query: 503  ETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFP 381
             +              ++P Y   SPSY  S P+ SPS  P
Sbjct: 1251 PS-----------YSPSSPNYSPSSPSYSPSSPSYSPSSGP 1280


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