BLASTX nr result
ID: Ephedra28_contig00013327
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00013327
(963 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutr... 146 1e-32
dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila] 146 1e-32
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme... 144 4e-32
ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [A... 144 5e-32
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L... 141 4e-31
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ... 141 4e-31
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 140 9e-31
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis... 140 9e-31
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 139 1e-30
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu... 139 2e-30
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps... 138 3e-30
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 137 5e-30
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme... 137 6e-30
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 137 6e-30
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] 137 8e-30
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 136 1e-29
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 135 2e-29
tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea m... 135 2e-29
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S... 135 3e-29
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 135 3e-29
>ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum]
gi|557105252|gb|ESQ45586.1| hypothetical protein
EUTSA_v10010107mg [Eutrema salsugineum]
Length = 927
Score = 146 bits (368), Expect = 1e-32
Identities = 82/182 (45%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFI--VHNP 362
TQ+SIGGFG TAK+L DYLE +G + RCRLK S TPP SYP F I+ T+ I ++
Sbjct: 29 TQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEIADTSNIRNFNDY 88
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
RV PH FV F++P + + A + L +G LKV G E Y+ QRRR P +
Sbjct: 89 KRVEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSLGPENPYTLNQRRRTTTPLKL 148
Query: 184 TKAKIEVGSLVTPEEYLVAWQ-DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVILCE 8
+ +E+G+LV+ +E+LV+W+ + VDF VDPFD+ CR TK FS +D VI C+
Sbjct: 149 SGISVEIGTLVSRDEFLVSWRAEKVDFLVDPFDNTCRFCFTKSTAFSLKDTMRHAVINCD 208
Query: 7 FK 2
+K
Sbjct: 209 YK 210
>dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 146 bits (368), Expect = 1e-32
Identities = 82/182 (45%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFI--VHNP 362
TQ+SIGGFG TAK+L DYLE +G + RCRLK S TPP SYP F I+ T+ I ++
Sbjct: 13 TQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEIADTSNIRNFNDY 72
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
RV PH FV F++P + + A + L +G LKV G E Y+ QRRR P +
Sbjct: 73 KRVEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSLGPENPYTLNQRRRTTTPLKL 132
Query: 184 TKAKIEVGSLVTPEEYLVAWQ-DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVILCE 8
+ +E+G+LV+ +E+LV+W+ + VDF VDPFD+ CR TK FS +D VI C+
Sbjct: 133 SGISVEIGTLVSRDEFLVSWRAEKVDFLVDPFDNTCRFCFTKSTAFSLKDTMRHAVINCD 192
Query: 7 FK 2
+K
Sbjct: 193 YK 194
>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 144 bits (364), Expect = 4e-32
Identities = 81/190 (42%), Positives = 108/190 (56%), Gaps = 12/190 (6%)
Frame = -3
Query: 535 STQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFISSTNFIVHNPA- 359
+TQ+S+GGFG GV+A +LAD+LE G V RCR+KTS TPP S+P F+ ST P
Sbjct: 18 TTQVSLGGFGAGVSASELADFLEYEAGLVWRCRVKTSWTPPDSFPDFLRSTASASGAPPP 77
Query: 358 ---RVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSETYSRFQRRRNINPFR 188
RV PH FV F P A + A + L F G L + S++ R RR+NI PFR
Sbjct: 78 PYDRVPPHAFVHFARPEAARRATDAAGKSELLFGGKPLLIASASDSSLRASRRQNIKPFR 137
Query: 187 FTKAKIEVGSLV-----TPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFSTRDKK 32
F A +EVGS + PE +L AW+ ++F VDPFD CCR+ T+D F+ +
Sbjct: 138 FADAVLEVGSFLAPGDEAPEAFLAAWRGPAAGLEFLVDPFDACCRLIFTRDTAFAFPGYR 197
Query: 31 NDTVILCEFK 2
V+ C+ K
Sbjct: 198 EVPVMGCDVK 207
>ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda]
gi|548844121|gb|ERN03747.1| hypothetical protein
AMTR_s00078p00055040 [Amborella trichopoda]
Length = 1207
Score = 144 bits (363), Expect = 5e-32
Identities = 74/188 (39%), Positives = 106/188 (56%), Gaps = 5/188 (2%)
Frame = -3
Query: 550 KLKMESTQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFISSTNFI- 374
K K+ TQ+SIGGF +AK+L +YLE+ +G++ RCRLK S+TPP SYP + + +
Sbjct: 10 KKKLVITQVSIGGFDERTSAKELTEYLERAVGSIMRCRLKRSLTPPNSYPDYEVDASQVR 69
Query: 373 -VHNPARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSETYSRFQRRRNIN 197
+ RV+PH FV F P K ++ + L + LKVH G + R R+
Sbjct: 70 RTIDVTRVIPHAFVHFAIPKCAKRAETLSGKCALILDSSPLKVHVGMNSSFRVAWRKTTL 129
Query: 196 PFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFSTRDKKND 26
P +F K+++GSL + E+ V W+ VDFHVDP+D C +F TKD FS +D
Sbjct: 130 PIKFENCKVQIGSLFSWSEFWVGWEGPNLGVDFHVDPYDGTCGVFFTKDITFSIKDSNQK 189
Query: 25 TVILCEFK 2
VI C+ K
Sbjct: 190 VVIKCDMK 197
>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
Length = 1201
Score = 141 bits (355), Expect = 4e-31
Identities = 80/184 (43%), Positives = 108/184 (58%), Gaps = 7/184 (3%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFISSTNFIVHNP--- 362
TQ+SIGGF V A DLA++LE IG V RCRLKTS TPP SYP+F + +V
Sbjct: 13 TQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTALVKRTDDY 72
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
+V PH FV F P +V E + + L + G LKV G + Y QRRR PF+
Sbjct: 73 KKVEPHAFVHFALPESVTEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRKETPFKL 132
Query: 184 TKAKIEVGSLVTPEEYLVAW---QDIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVIL 14
+ +E+G+LV+PEE++VAW + V+ VDPFD CR+ ++D FS + + VI
Sbjct: 133 SDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEKKAVIK 192
Query: 13 CEFK 2
C+FK
Sbjct: 193 CDFK 196
>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 141 bits (355), Expect = 4e-31
Identities = 81/182 (44%), Positives = 108/182 (59%), Gaps = 5/182 (2%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFI--VHNP 362
TQ+SIGGFG TAK L DYLE +G V RCRLKTS TPP SYP F I+ T+ I +
Sbjct: 13 TQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEIADTSSIPKFDDY 72
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
+V PH FV F P + + A + L +G LKV G + Y+ QRRR P++
Sbjct: 73 KKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTLNQRRRTTTPYKL 132
Query: 184 TKAKIEVGSLVTPEEYLVAWQ-DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVILCE 8
+E+G+LV+ +E+LV+W+ D VDF VDPFD+ C+ K FS +D VI C+
Sbjct: 133 AGISLEIGTLVSRDEFLVSWRADGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINCD 192
Query: 7 FK 2
+K
Sbjct: 193 YK 194
>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 140 bits (352), Expect = 9e-31
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Frame = -3
Query: 544 KMESTQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFIVH 368
K+ TQ+S GGF V A+DL YLE IG V RCRLKTS TPP SYP F +S+ ++
Sbjct: 8 KIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVANVIK 67
Query: 367 NP--ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNIN 197
+ +V+PH FV F++P + E + A RG L FN LK G E+ + QRRR
Sbjct: 68 SDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRRRTKV 127
Query: 196 PFRFTKAKIEVGSLVTPEEYLVAWQ---DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKND 26
PF+ + ++++G+L + + VAW+ +DF VDPFD C+ TKD FS +D
Sbjct: 128 PFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKH 187
Query: 25 TVILCEFK 2
T + C++K
Sbjct: 188 TFLKCDYK 195
>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
6 [Cucumis sativus]
Length = 1197
Score = 140 bits (352), Expect = 9e-31
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Frame = -3
Query: 544 KMESTQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFIVH 368
K+ TQ+S GGF V A+DL YLE IG V RCRLKTS TPP SYP F +S+ ++
Sbjct: 8 KIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVANVIK 67
Query: 367 NP--ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNIN 197
+ +V+PH FV F++P + E + A RG L FN LK G E+ + QRRR
Sbjct: 68 SDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRRRTKV 127
Query: 196 PFRFTKAKIEVGSLVTPEEYLVAWQ---DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKND 26
PF+ + ++++G+L + + VAW+ +DF VDPFD C+ TKD FS +D
Sbjct: 128 PFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKH 187
Query: 25 TVILCEFK 2
T + C++K
Sbjct: 188 TFLKCDYK 195
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 139 bits (351), Expect = 1e-30
Identities = 86/187 (45%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Frame = -3
Query: 541 MESTQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFI--V 371
M TQISIGGF VTA +L YLE IG+V RCRLKTS TPP SYP F I T I
Sbjct: 10 MVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKIERT 69
Query: 370 HNPARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINP 194
+ +V PH FV F++P A + A + L +G LKV G ET + QRRR P
Sbjct: 70 EDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTTFP 129
Query: 193 FRFTKAKIEVGSLVTPEEYLVAWQ---DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDT 23
F+F ++E+G LV+ +EY W+ VDF VDPFD C+ TKD FS +
Sbjct: 130 FKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPKHA 189
Query: 22 VILCEFK 2
VI C FK
Sbjct: 190 VIKCNFK 196
>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
6 [Gossypium hirsutum]
Length = 1196
Score = 139 bits (350), Expect = 2e-30
Identities = 81/184 (44%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFIVH--NP 362
TQ+S+GGF V A+DL YLE +G V RCRLKTS TPP SYP F I+ T I N
Sbjct: 13 TQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQRKDNY 72
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
+V PH FV F +P AV V A R L+FN LKV G E Y +RRR+ PF+
Sbjct: 73 KKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTTPFKL 132
Query: 184 TKAKIEVGSLVTPEEYLVAWQ---DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVIL 14
+E+G+L + +E++V W+ V+F VDPFD C+ ++D FS + VI
Sbjct: 133 PDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEHAVIK 192
Query: 13 CEFK 2
C+FK
Sbjct: 193 CDFK 196
>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
gi|482559225|gb|EOA23416.1| hypothetical protein
CARUB_v10016597mg [Capsella rubella]
Length = 1197
Score = 138 bits (348), Expect = 3e-30
Identities = 78/182 (42%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFI--VHNP 362
TQ+SIGGFG TAK L DYLE +G V RCRLK S TPP SYP F I+ T+ I + +
Sbjct: 13 TQVSIGGFGESTTAKQLTDYLEDEVGLVWRCRLKNSWTPPGSYPNFEIADTSNIPRIDDY 72
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
+V PH FV F + + A + L +G LKV G + Y+ QRRR P++
Sbjct: 73 KKVEPHAFVHFALSESTNHAMDAAGQCKLILDGQPLKVSLGPKNPYTLNQRRRTTTPYKM 132
Query: 184 TKAKIEVGSLVTPEEYLVAWQ-DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVILCE 8
T +E+G+LV+ +E+LV+W+ D V+F VDPFD+ C+ +K F+ +D VI C+
Sbjct: 133 TGVSLEIGTLVSRDEFLVSWRADGVNFLVDPFDNTCKFCFSKSTAFAFKDAVMHAVIKCD 192
Query: 7 FK 2
+K
Sbjct: 193 YK 194
>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 137 bits (346), Expect = 5e-30
Identities = 81/183 (44%), Positives = 103/183 (56%), Gaps = 6/183 (3%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFISSTNFI--VHNPA 359
TQ+S GGF AKDL YLE IG V RCRLKTS TPP S+P F +T + + +
Sbjct: 13 TQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEINTADVKRTDDYS 72
Query: 358 RVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRFT 182
RV PH FV F++P +V + A R L FN LKV G E Y +RRR PF+ +
Sbjct: 73 RVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRTKTPFKLS 132
Query: 181 KAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVILC 11
+E+GSLV +E+ +W+ VDF VDPFD C+ T D FS + K VI C
Sbjct: 133 DVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAVIKC 192
Query: 10 EFK 2
+FK
Sbjct: 193 DFK 195
>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
italica]
Length = 1211
Score = 137 bits (345), Expect = 6e-30
Identities = 74/188 (39%), Positives = 103/188 (54%), Gaps = 11/188 (5%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFISSTNFIVHNPA-- 359
TQ+S+GGF VTA+DLAD+LE +G V RCR+KTS TPP +YP F+ A
Sbjct: 22 TQVSLGGFDATVTARDLADFLESEVGQVWRCRVKTSWTPPDAYPDFLLPAVTPAAGAAGQ 81
Query: 358 -----RVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSETYSRFQRRRNINP 194
RV PH FV F P A + A R L L+ ++ R RRRN+ P
Sbjct: 82 PPQYDRVPPHAFVHFARPEAARRAADAAGRSELILGRKPLRAASAPDSSIRASRRRNVKP 141
Query: 193 FRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFSTRDKKNDT 23
FRFT +++EVG L P+ + AW+ ++F VDPFD CR T+D F+ ++ +
Sbjct: 142 FRFTDSRLEVGDLPAPDSFFAAWRGPDAGLEFSVDPFDGTCRFVFTRDTAFAYQEYRQAA 201
Query: 22 VIL-CEFK 2
V++ C+ K
Sbjct: 202 VVMRCDIK 209
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA
polymerase, putative [Ricinus communis]
Length = 1203
Score = 137 bits (345), Expect = 6e-30
Identities = 83/184 (45%), Positives = 104/184 (56%), Gaps = 7/184 (3%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFIVHNPA- 359
TQ+S GGF VTA+DL YL+ IG V RCRLKTS TPP SYP F I+ T I A
Sbjct: 13 TQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQRVDAY 72
Query: 358 -RVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
RV PH FV F +P + A L FNG +KV G E + QRRR PF+
Sbjct: 73 RRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFKL 132
Query: 184 TKAKIEVGSLVTPEEYLVAWQ---DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVIL 14
+ +E+G+LV+ +E+LV W+ VDF VDPFD C+ T+D FS + VI
Sbjct: 133 SDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIR 192
Query: 13 CEFK 2
C+FK
Sbjct: 193 CDFK 196
>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
Length = 1197
Score = 137 bits (344), Expect = 8e-30
Identities = 76/184 (41%), Positives = 102/184 (55%), Gaps = 7/184 (3%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFISSTNFIVHNP--- 362
TQ+S+GGFG V AKDL +Y + +G V RCRLKTS TPP SYP F + ++
Sbjct: 13 TQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVIQRTDDY 72
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
+V PH FV F +P V A R L FN LKV G E Y +RRRN PF+
Sbjct: 73 KKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRNTTPFKL 132
Query: 184 TKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVIL 14
+ +++G +V+ +E+ V W+ VDF VDPFD C+ ++D FS + VI
Sbjct: 133 SDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTTEYAVIK 192
Query: 13 CEFK 2
C+FK
Sbjct: 193 CDFK 196
>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
putative RNA-dependent RNA polymerase [Oryza sativa
Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
[Oryza sativa Japonica Group]
Length = 1218
Score = 136 bits (343), Expect = 1e-29
Identities = 76/188 (40%), Positives = 101/188 (53%), Gaps = 10/188 (5%)
Frame = -3
Query: 535 STQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFISSTNFIVHNPA- 359
+TQ+S+GGF GV A DLAD+LE +G V RCR+KTS TPP SYP F T + A
Sbjct: 29 TTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASAAA 88
Query: 358 ------RVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSETYSRFQRRRNIN 197
RV PH FV F P + +A L G L+V ++ R RR +I
Sbjct: 89 APPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSSIA 148
Query: 196 PFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFSTRDKKND 26
PFRF ++EVG+L +P +L AW+ +D VDPFD CCR+ T+D F+ +
Sbjct: 149 PFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFREV 208
Query: 25 TVILCEFK 2
I C+ K
Sbjct: 209 AAIRCDVK 216
>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca
subsp. vesca]
Length = 1197
Score = 135 bits (341), Expect = 2e-29
Identities = 81/184 (44%), Positives = 102/184 (55%), Gaps = 7/184 (3%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFI--VHNP 362
TQ+S GGFG VTAK+L YLE IG V RCRLKTS TPP S P F IS I +
Sbjct: 13 TQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAADIETTDDY 72
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
+V PH FV F +P +V + R L FN LK G E ++ +RRR PF+
Sbjct: 73 RKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRRRTKIPFKL 132
Query: 184 TKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVIL 14
++E+GSLV +E+ VAW+ VDF VDPFD C+ +D FS + VI
Sbjct: 133 ADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLNKHAVIT 192
Query: 13 CEFK 2
C+FK
Sbjct: 193 CDFK 196
>tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 135 bits (340), Expect = 2e-29
Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Frame = -3
Query: 535 STQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFISSTNFIVHNPA- 359
+TQ+S+GGF V A DLAD+LE N G+V RCRLKTS TPP +YP F+ T P
Sbjct: 21 TTQVSLGGFDATVKALDLADFLELNAGSVWRCRLKTSWTPPDAYPDFLLPTVTSAAAPPP 80
Query: 358 ---RVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSETYSRFQRRRNINPFR 188
RV PH FV F P + A R L +G L+ ++ R RRR+++PFR
Sbjct: 81 QYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAASAQDSSLRASRRRSVSPFR 140
Query: 187 FTKAKIEVGSLVTPEEYLVAWQ---DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVI 17
F +++EVG L + ++ AW+ ++F VDPFD C +D F R+ + V+
Sbjct: 141 FPGSRLEVGDLPASDAFIAAWRGPASGLEFSVDPFDGSCHFIFARDTAFKVREFRESVVM 200
Query: 16 LCEFK 2
C+ K
Sbjct: 201 RCDVK 205
>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein
SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 135 bits (339), Expect = 3e-29
Identities = 73/185 (39%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Frame = -3
Query: 535 STQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKFI--SSTNFIVHNP 362
+TQ+S+GGF V A DLAD+LE G V RCR+KTS TPP +YP F+ + T+ P
Sbjct: 21 TTQVSLGGFDATVKALDLADFLELKAGLVWRCRVKTSWTPPDAYPDFLLPTVTSAAAQPP 80
Query: 361 A--RVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSETYSRFQRRRNINPFR 188
RV PH FV F P + A R L +G L+ E+ R RRR+++PFR
Sbjct: 81 QYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAASAQESSLRASRRRSVSPFR 140
Query: 187 FTKAKIEVGSLVTPEEYLVAWQ---DIVDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVI 17
F +++EVG L + +L AW+ ++F VDPFD CR+ +D F R+ + V+
Sbjct: 141 FPGSRLEVGDLPAKDAFLAAWRGPASGLEFSVDPFDGSCRLIFARDTAFKVREFRESVVM 200
Query: 16 LCEFK 2
C+ K
Sbjct: 201 RCDVK 205
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 135 bits (339), Expect = 3e-29
Identities = 80/184 (43%), Positives = 103/184 (55%), Gaps = 7/184 (3%)
Frame = -3
Query: 532 TQISIGGFGGGVTAKDLADYLEKNIGTVARCRLKTSITPPFSYPKF-ISSTNFIVHNP-- 362
TQ+S+GGF VTAKDL +YLE+ IG V RCRLKTS TPP SYP F I+ I
Sbjct: 13 TQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTEDY 72
Query: 361 ARVLPHGFVQFLAPAAVKETVKMAKRGMLSFNGGTLKVHEGSET-YSRFQRRRNINPFRF 185
RV PH FV F P + + A R L N LK G E ++ QRRR PF+
Sbjct: 73 RRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFKL 132
Query: 184 TKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFSTRDKKNDTVIL 14
+ +E+G+LV+ +E+ V W+ VDF VDPFD CR +++ FS + VI
Sbjct: 133 SGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIK 192
Query: 13 CEFK 2
C+FK
Sbjct: 193 CDFK 196