BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00012984
         (408 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY16699.1| Uncharacterized protein TCM_035549 [Theobroma cacao]    91   1e-16
gb|EOY08378.1| DNA/RNA polymerases superfamily protein, partial ...    87   2e-15
emb|CAN62426.1| hypothetical protein VITISV_020611 [Vitis vinifera]    87   2e-15
gb|EOY26248.1| Uncharacterized protein TCM_046829 [Theobroma cacao]    87   3e-15
gb|EOY26101.1| Uncharacterized protein TCM_027503 [Theobroma cacao]    87   3e-15
gb|EOY16836.1| Uncharacterized protein TCM_035724 [Theobroma cacao]    87   3e-15
gb|EOY01158.1| DNA/RNA polymerases superfamily protein [Theobrom...    87   3e-15
gb|EOX95569.1| DNA/RNA polymerases superfamily protein [Theobrom...    87   3e-15
gb|EOX94045.1| DNA/RNA polymerases superfamily protein, partial ...    87   3e-15
ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746...    86   7e-15
emb|CAN60041.1| hypothetical protein VITISV_008274 [Vitis vinifera]    86   7e-15
ref|XP_004231520.1| PREDICTED: genome polyprotein-like [Solanum ...    85   9e-15
ref|NP_043933.1| hypothetical protein [Strawberry vein banding v...    85   1e-14
emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]          85   1e-14
gb|ABX80510.1| RdRp [Strawberry vein banding virus]                    85   1e-14
emb|CAN66234.1| hypothetical protein VITISV_023372 [Vitis vinifera]    85   1e-14
emb|CAN66235.1| hypothetical protein VITISV_023373 [Vitis vinifera]    85   1e-14
emb|CAN69162.1| hypothetical protein VITISV_016584 [Vitis vinifera]    85   1e-14
emb|CAN66051.1| hypothetical protein VITISV_018870 [Vitis vinifera]    85   1e-14
emb|CAN82625.1| hypothetical protein VITISV_010133 [Vitis vinifera]    84   2e-14

>gb|EOY16699.1| Uncharacterized protein TCM_035549 [Theobroma cacao]
          Length = 1392

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +P  DE++ ++  S V+SK D KSGYHQIR+ + D  KT F TP+GL+EWLVMPFGL
Sbjct: 673 RFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGDERKTAFKTPDGLFEWLVMPFGL 732

Query: 369 KNAPS--MHYAKKGL 407
            NAPS  M + +KGL
Sbjct: 733 SNAPSTFMSHGRKGL 747


>gb|EOY08378.1| DNA/RNA polymerases superfamily protein, partial [Theobroma cacao]
          Length = 277

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 39/65 (60%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +P  DE+I ++  S V+SK D KSGYHQIR+ + D  KT F TP+GL+EWLVMPFGL
Sbjct: 16  RFPIPRLDEMIDQLVGSRVFSKIDLKSGYHQIRMRDGDEWKTVFKTPDGLFEWLVMPFGL 75

Query: 369 KNAPS 383
            NAPS
Sbjct: 76  SNAPS 80


>emb|CAN62426.1| hypothetical protein VITISV_020611 [Vitis vinifera]
          Length = 987

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 41/65 (63%), Positives = 50/65 (76%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +PNK +L+QR+  S V+SKFD KSG+ QI+ITE D +KTTF  P G YEW VMPFGL
Sbjct: 738 RYPIPNKKDLLQRLVKSKVFSKFDMKSGFWQIQITEKDRYKTTFVVPFGHYEWNVMPFGL 797

Query: 369 KNAPS 383
           KN+PS
Sbjct: 798 KNSPS 802


>gb|EOY26248.1| Uncharacterized protein TCM_046829 [Theobroma cacao]
          Length = 672

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +P  DE++ ++  S V+SK D KSGYHQIR+ + D  KT F TP+GL+EWLVMPFGL
Sbjct: 70  RFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGL 129

Query: 369 KNAPS 383
            NAPS
Sbjct: 130 SNAPS 134


>gb|EOY26101.1| Uncharacterized protein TCM_027503 [Theobroma cacao]
          Length = 338

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +P  DE++ ++  S V+SK D KSGYHQIR+ + D  KT F TP+GL+EWLVMPFGL
Sbjct: 181 RFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGL 240

Query: 369 KNAPS 383
            NAPS
Sbjct: 241 SNAPS 245


>gb|EOY16836.1| Uncharacterized protein TCM_035724 [Theobroma cacao]
          Length = 475

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +P  DE++ ++  S V+SK D KSGYHQIR+ + D  KT F TP+GL+EWLVMPFGL
Sbjct: 217 RFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGL 276

Query: 369 KNAPS 383
            NAPS
Sbjct: 277 SNAPS 281


>gb|EOY01158.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 786

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +P  DE++ ++  S V+SK D KSGYHQIR+ + D  KT F TP+GL+EWLVMPFGL
Sbjct: 60  RFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGL 119

Query: 369 KNAPS 383
            NAPS
Sbjct: 120 SNAPS 124


>gb|EOX95569.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1452

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +P  DE++ ++  S V+SK D KSGYHQIR+ + D  KT F TP+GL+EWLVMPFGL
Sbjct: 608 RFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGL 667

Query: 369 KNAPS 383
            NAPS
Sbjct: 668 SNAPS 672


>gb|EOX94045.1| DNA/RNA polymerases superfamily protein, partial [Theobroma cacao]
          Length = 624

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +P  DE++ ++  S V+SK D KSGYHQIR+ + D  KT F TP+GL+EWLVMPFGL
Sbjct: 60  RFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGL 119

Query: 369 KNAPS 383
            NAPS
Sbjct: 120 SNAPS 124


>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
            [Piper yellow mottle virus]
          Length = 1925

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 38/67 (56%), Positives = 49/67 (73%)
 Frame = +3

Query: 198  LPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGLKNA 377
            LP  + +I ++ +S V+SKFD KSG+HQ+ +    I  T FSTPNGLYEWLVMPFGLKNA
Sbjct: 1468 LPGINTIISKVGNSKVFSKFDLKSGFHQVAMDPESIEWTAFSTPNGLYEWLVMPFGLKNA 1527

Query: 378  PSMHYAK 398
            P++   K
Sbjct: 1528 PAVFQRK 1534


>emb|CAN60041.1| hypothetical protein VITISV_008274 [Vitis vinifera]
          Length = 1429

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +3

Query: 189  RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
            R  +PNK +L+QR+  S V+SKFD KSG+ QI+I E D +KT F  P G YEW VMPFGL
Sbjct: 1255 RYXIPNKKDLLQRLVKSKVFSKFDMKSGFWQIQIAEKDKYKTAFVVPFGHYEWNVMPFGL 1314

Query: 369  KNAPS 383
            KNAPS
Sbjct: 1315 KNAPS 1319


>ref|XP_004231520.1| PREDICTED: genome polyprotein-like [Solanum lycopersicum]
          Length = 349

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +PNK +L++R   + VYSKFD KSG+ QI+I+E D HKT F+ P G YEW VMPFGL
Sbjct: 48  RYPIPNKRDLLKRTFKANVYSKFDMKSGFWQIQISEKDKHKTAFNVPFGQYEWNVMPFGL 107

Query: 369 KNAPS 383
           KNAPS
Sbjct: 108 KNAPS 112


>ref|NP_043933.1| hypothetical protein [Strawberry vein banding virus]
           gi|1360613|emb|CAA65970.1| ORF V [Strawberry vein
           banding virus]
          Length = 708

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 37/63 (58%), Positives = 45/63 (71%)
 Frame = +3

Query: 198 LPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGLKNA 377
           LPNK++L+QRI     YS FDCKSG+ Q+R+    I  T FS P G YEWLVMPFGLK A
Sbjct: 352 LPNKEQLLQRIGGKTFYSSFDCKSGFWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQA 411

Query: 378 PSM 386
           P++
Sbjct: 412 PAI 414


>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
          Length = 699

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 37/63 (58%), Positives = 45/63 (71%)
 Frame = +3

Query: 198 LPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGLKNA 377
           LPNK++L+QRI     YS FDCKSG+ Q+R+    I  T FS P G YEWLVMPFGLK A
Sbjct: 343 LPNKEQLLQRIGGKTYYSSFDCKSGFWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQA 402

Query: 378 PSM 386
           P++
Sbjct: 403 PAI 405


>gb|ABX80510.1| RdRp [Strawberry vein banding virus]
          Length = 94

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 37/63 (58%), Positives = 45/63 (71%)
 Frame = +3

Query: 198 LPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGLKNA 377
           LPNK++L+QRI     YS FDCKSG+ Q+R+    I  T FS P G YEWLVMPFGLK A
Sbjct: 13  LPNKEQLLQRIGGKTFYSSFDCKSGFWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQA 72

Query: 378 PSM 386
           P++
Sbjct: 73  PAI 75


>emb|CAN66234.1| hypothetical protein VITISV_023372 [Vitis vinifera]
          Length = 1401

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +3

Query: 189  RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
            R  +PNK +L+QR+  S V+SKFD KSG+ QI+I E D +KT F  P G YEW VMPFGL
Sbjct: 849  RYPIPNKKDLLQRLGKSKVFSKFDMKSGFWQIQIAEKDRYKTAFVVPFGHYEWNVMPFGL 908

Query: 369  KNAPS 383
            KNAPS
Sbjct: 909  KNAPS 913


>emb|CAN66235.1| hypothetical protein VITISV_023373 [Vitis vinifera]
          Length = 1968

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +PNK +L+QR+  S V+SKFD KSG+ QI+I E D +KT F  P G YEW VMPFGL
Sbjct: 435 RYPIPNKKDLLQRLGKSKVFSKFDMKSGFWQIQIAEKDRYKTAFVVPFGHYEWNVMPFGL 494

Query: 369 KNAPS 383
           KNAPS
Sbjct: 495 KNAPS 499



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +3

Query: 189  RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEW 347
            R  +PNK +L+QR+  S V+SKFD KSG+ QI+I E D +KT F  P G YEW
Sbjct: 1476 RYPIPNKKDLLQRLGKSKVFSKFDMKSGFWQIQIAEKDRYKTAFVVPFGHYEW 1528



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +3

Query: 264 KSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGLKNAPS 383
           KSG+ QI+I E D +KT F  P G YEW VMPFGLKNAPS
Sbjct: 2   KSGFWQIQIAEKDRYKTAFVVPFGHYEWNVMPFGLKNAPS 41


>emb|CAN69162.1| hypothetical protein VITISV_016584 [Vitis vinifera]
          Length = 4779

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +PNK +L+QR+  S V+SKFD KSG+ QI+I E D +KT F  P G YEW VMPFGL
Sbjct: 64  RYPIPNKKDLLQRLGKSKVFSKFDMKSGFWQIQIAEKDRYKTAFVVPFGHYEWNVMPFGL 123

Query: 369 KNAPS 383
           KNAPS
Sbjct: 124 KNAPS 128


>emb|CAN66051.1| hypothetical protein VITISV_018870 [Vitis vinifera]
          Length = 2913

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +3

Query: 189  RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
            R  +PNK +L+QR+  S V+SKFD KSG+ QI+I E D +KT F  P G YEW VMPFGL
Sbjct: 808  RYPIPNKKDLLQRLGKSKVFSKFDMKSGFWQIQIAEKDRYKTAFVVPFGHYEWNVMPFGL 867

Query: 369  KNAPS 383
            KNAPS
Sbjct: 868  KNAPS 872


>emb|CAN82625.1| hypothetical protein VITISV_010133 [Vitis vinifera]
          Length = 1102

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 38/65 (58%), Positives = 49/65 (75%)
 Frame = +3

Query: 189 RICLPNKDELIQRIASSAVYSKFDCKSGYHQIRITEADIHKTTFSTPNGLYEWLVMPFGL 368
           R  +PNK +L+QR+ +S ++SKFD KSG+ QI++ E D +KT F  P G YEW VMPFGL
Sbjct: 784 RYPIPNKKDLLQRLVNSRIFSKFDMKSGFWQIQVAEKDRYKTAFVVPFGHYEWNVMPFGL 843

Query: 369 KNAPS 383
           KNAPS
Sbjct: 844 KNAPS 848