BLASTX nr result
ID: Ephedra28_contig00012847
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00012847
(464 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006298696.1| hypothetical protein CARUB_v10014791mg, part... 59 5e-07
ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group] g... 58 1e-06
ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis... 57 2e-06
gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabi... 57 2e-06
gb|ABK22994.1| unknown [Picea sitchensis] 57 3e-06
ref|XP_003564921.1| PREDICTED: glycine-rich RNA-binding protein ... 56 4e-06
ref|XP_002962326.1| hypothetical protein SELMODRAFT_78193 [Selag... 56 4e-06
emb|CCX33985.1| Similar to Uncharacterized RNA-binding protein C... 55 7e-06
ref|XP_005087554.1| PREDICTED: polyadenylate-binding protein 1-l... 55 7e-06
gb|AFP57455.1| RNA-binding glycine-rich protein [Nicotiana undul... 55 1e-05
gb|AFP57453.1| RNA-binding glycine-rich protein [Nicotiana rustica] 55 1e-05
gb|AFP57449.1| RNA-binding glycine-rich protein [Nicotiana glauca] 55 1e-05
gb|AFP57448.1| RNA-binding glycine-rich protein [Nicotiana cleve... 55 1e-05
gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis] 55 1e-05
ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [... 55 1e-05
>ref|XP_006298696.1| hypothetical protein CARUB_v10014791mg, partial [Capsella rubella]
gi|482567405|gb|EOA31594.1| hypothetical protein
CARUB_v10014791mg, partial [Capsella rubella]
Length = 167
Score = 59.3 bits (142), Expect = 5e-07
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
SFGDV A V D SRG+GFV+Y SE+ A A+ EMDGKEL G+ ++V+LA E
Sbjct: 89 SFGDVTEATV---IADRETGRSRGFGFVSYDSEDSANNAIKEMDGKELNGRNIRVNLANE 145
Query: 282 ENIIP 268
P
Sbjct: 146 RPSAP 150
>ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|2624328|emb|CAA05729.1| OsGRP2 [Oryza sativa Japonica
Group] gi|19386753|dbj|BAB86134.1| OsGRP2 [Oryza sativa
Japonica Group] gi|20805007|dbj|BAB92683.1| OsGRP2
[Oryza sativa Japonica Group]
gi|113534726|dbj|BAF07109.1| Os01g0916600 [Oryza sativa
Japonica Group] gi|125528847|gb|EAY76961.1| hypothetical
protein OsI_04919 [Oryza sativa Indica Group]
gi|125573102|gb|EAZ14617.1| hypothetical protein
OsJ_04542 [Oryza sativa Japonica Group]
gi|215765299|dbj|BAG86996.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215768370|dbj|BAH00599.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 150
Score = 58.2 bits (139), Expect = 1e-06
Identities = 29/60 (48%), Positives = 41/60 (68%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
SFGDV ARV D SRG+GFV++ + +DA+ A+D MDGKEL+G+ ++V+ A E
Sbjct: 59 SFGDVTEARV---INDRESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANE 115
>ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding
protein 4 [Arabidopsis thaliana]
gi|75335048|sp|Q9LIS2.1|RBG4_ARATH RecName:
Full=Glycine-rich RNA-binding protein 4, mitochondrial;
Short=AtGR-RBP4; AltName: Full=AtRBG4; AltName:
Full=Glycine-rich protein 4; Short=AtGRP4; AltName:
Full=Mitochondrial RNA-binding protein 1b;
Short=At-mRBP1b; Flags: Precursor
gi|9294652|dbj|BAB03001.1| glycine-rich RNA binding
protein-like [Arabidopsis thaliana]
gi|17979516|gb|AAL50093.1| AT3g23830/F14O13_2
[Arabidopsis thaliana] gi|20453303|gb|AAM19890.1|
AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|332643298|gb|AEE76819.1| glycine-rich RNA-binding
protein 4 [Arabidopsis thaliana]
gi|332643299|gb|AEE76820.1| glycine-rich RNA-binding
protein 4 [Arabidopsis thaliana]
Length = 136
Score = 57.4 bits (137), Expect = 2e-06
Identities = 30/65 (46%), Positives = 41/65 (63%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
SFG+V A V D SRG+GFV++ E+ A A+ EMDGKEL G+Q++V+LA E
Sbjct: 57 SFGEVTEATV---IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATE 113
Query: 282 ENIIP 268
+ P
Sbjct: 114 RSSAP 118
>gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 57.4 bits (137), Expect = 2e-06
Identities = 30/65 (46%), Positives = 41/65 (63%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
SFG+V A V D SRG+GFV++ E+ A A+ EMDGKEL G+Q++V+LA E
Sbjct: 57 SFGEVTEATV---IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATE 113
Query: 282 ENIIP 268
+ P
Sbjct: 114 RSSAP 118
>gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/60 (45%), Positives = 42/60 (70%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
+FGDV A++ D SRG+GFVT+ S ++A AV+ MDGK+L+G+ ++V++AQE
Sbjct: 61 TFGDVMEAKI---INDRETGRSRGFGFVTFASPDEANAAVEAMDGKDLQGRSIRVNIAQE 117
>ref|XP_003564921.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 156
Score = 56.2 bits (134), Expect = 4e-06
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
SFG+V ARV D SRG+GFV + +EEDA+KA MDG+EL G+ V+V+ A E
Sbjct: 59 SFGEVYEARV---ITDRETGRSRGFGFVEFSNEEDAKKAASSMDGQELDGRSVRVNFANE 115
>ref|XP_002962326.1| hypothetical protein SELMODRAFT_78193 [Selaginella moellendorffii]
gi|300169187|gb|EFJ35789.1| hypothetical protein
SELMODRAFT_78193 [Selaginella moellendorffii]
Length = 89
Score = 56.2 bits (134), Expect = 4e-06
Identities = 26/61 (42%), Positives = 40/61 (65%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
SFG+V+ R+ +D S+GYGF+TY SE DA+ A+ MDGK L G++++V+ A
Sbjct: 17 SFGEVREVRI---VKDRETGKSKGYGFITYVSEADAQDALQAMDGKNLNGREIRVNFAAR 73
Query: 282 E 280
+
Sbjct: 74 D 74
>emb|CCX33985.1| Similar to Uncharacterized RNA-binding protein C4F6.14; acc. no.
O74400 [Pyronema omphalodes CBS 100304]
Length = 745
Score = 55.5 bits (132), Expect = 7e-06
Identities = 24/40 (60%), Positives = 34/40 (85%)
Frame = -3
Query: 405 KGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQ 286
K SRG+GFVT+ EDA++AV EMDGKE++G+++KV LA+
Sbjct: 59 KQSRGFGFVTFADAEDAQRAVKEMDGKEVEGRKIKVELAE 98
>ref|XP_005087554.1| PREDICTED: polyadenylate-binding protein 1-like [Mesocricetus
auratus]
Length = 648
Score = 55.5 bits (132), Expect = 7e-06
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = -3
Query: 459 FGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQEE 280
FG S +V DG K S+G+GFV++ EDARKAVDEM+GK+L GKQ+ V AQ++
Sbjct: 214 FGPALSVKVM---TDGSGK-SKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
>gb|AFP57455.1| RNA-binding glycine-rich protein [Nicotiana undulata]
Length = 144
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
+FGDV ARV G SRG+GFV + +E A +A+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQE 116
>gb|AFP57453.1| RNA-binding glycine-rich protein [Nicotiana rustica]
Length = 144
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
+FGDV ARV G SRG+GFV + +E A +A+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQE 116
>gb|AFP57449.1| RNA-binding glycine-rich protein [Nicotiana glauca]
Length = 144
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
+FGDV ARV G SRG+GFV + +E A +A+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQE 116
>gb|AFP57448.1| RNA-binding glycine-rich protein [Nicotiana clevelandii]
Length = 144
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = -3
Query: 462 SFGDVKSARVKYRYRDGVKKGSRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQE 283
+FGDV ARV G SRG+GFV + +E A +A+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQE 116
>gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 55.1 bits (131), Expect = 1e-05
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = -3
Query: 399 SRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQEE 280
S+G+GFV++ EDARKAVDEM+GKEL GKQ+ V AQ++
Sbjct: 230 SKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKK 269
>ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 55.1 bits (131), Expect = 1e-05
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = -3
Query: 399 SRGYGFVTYFSEEDARKAVDEMDGKELKGKQVKVSLAQEE 280
S+G+GFV++ EDARKAVDEM+GKEL GKQ+ V AQ++
Sbjct: 275 SKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKK 314