BLASTX nr result
ID: Ephedra28_contig00012832
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00012832
(402 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006298696.1| hypothetical protein CARUB_v10014791mg, part... 61 2e-07
ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis... 61 2e-07
gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabi... 61 2e-07
gb|ABK22994.1| unknown [Picea sitchensis] 60 4e-07
emb|CCX33985.1| Similar to Uncharacterized RNA-binding protein C... 59 7e-07
gb|AFP57455.1| RNA-binding glycine-rich protein [Nicotiana undul... 58 1e-06
gb|AFP57453.1| RNA-binding glycine-rich protein [Nicotiana rustica] 58 1e-06
gb|AFP57449.1| RNA-binding glycine-rich protein [Nicotiana glauca] 58 1e-06
gb|AFP57448.1| RNA-binding glycine-rich protein [Nicotiana cleve... 58 1e-06
ref|XP_004958226.1| PREDICTED: glycine-rich RNA-binding protein ... 57 2e-06
gb|AFP57452.1| RNA-binding glycine-rich protein [Nicotiana repanda] 57 3e-06
gb|AFP57450.1| RNA-binding glycine-rich protein [Nicotiana goods... 57 3e-06
ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein ... 57 3e-06
gb|ACN30953.1| unknown [Zea mays] 57 3e-06
gb|ACG40707.1| glycine-rich RNA-binding protein 2 [Zea mays] 57 3e-06
ref|NP_001150149.1| LOC100283778 [Zea mays] gi|195605606|gb|ACG2... 57 3e-06
ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group] g... 57 3e-06
dbj|BAA22083.1| RNA binding protein [Nicotiana sylvestris] gi|29... 57 3e-06
gb|AFP57445.1| RNA-binding glycine-rich protein [Nicotiana tabacum] 57 3e-06
dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare] 57 3e-06
>ref|XP_006298696.1| hypothetical protein CARUB_v10014791mg, partial [Capsella rubella]
gi|482567405|gb|EOA31594.1| hypothetical protein
CARUB_v10014791mg, partial [Capsella rubella]
Length = 167
Score = 60.8 bits (146), Expect = 2e-07
Identities = 33/65 (50%), Positives = 41/65 (63%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
SFGDV A V D SRGFGFV+Y +E+ A AI+EMDGKEL G+ ++V+LA E
Sbjct: 89 SFGDVTEATV---IADRETGRSRGFGFVSYDSEDSANNAIKEMDGKELNGRNIRVNLANE 145
Query: 220 ENIIP 206
P
Sbjct: 146 RPSAP 150
>ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding
protein 4 [Arabidopsis thaliana]
gi|75335048|sp|Q9LIS2.1|RBG4_ARATH RecName:
Full=Glycine-rich RNA-binding protein 4, mitochondrial;
Short=AtGR-RBP4; AltName: Full=AtRBG4; AltName:
Full=Glycine-rich protein 4; Short=AtGRP4; AltName:
Full=Mitochondrial RNA-binding protein 1b;
Short=At-mRBP1b; Flags: Precursor
gi|9294652|dbj|BAB03001.1| glycine-rich RNA binding
protein-like [Arabidopsis thaliana]
gi|17979516|gb|AAL50093.1| AT3g23830/F14O13_2
[Arabidopsis thaliana] gi|20453303|gb|AAM19890.1|
AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|332643298|gb|AEE76819.1| glycine-rich RNA-binding
protein 4 [Arabidopsis thaliana]
gi|332643299|gb|AEE76820.1| glycine-rich RNA-binding
protein 4 [Arabidopsis thaliana]
Length = 136
Score = 60.8 bits (146), Expect = 2e-07
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
SFG+V A V D SRGFGFV+++ E+ A AI+EMDGKEL G+Q++V+LA E
Sbjct: 57 SFGEVTEATV---IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATE 113
Query: 220 ENIIP 206
+ P
Sbjct: 114 RSSAP 118
>gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 60.8 bits (146), Expect = 2e-07
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
SFG+V A V D SRGFGFV+++ E+ A AI+EMDGKEL G+Q++V+LA E
Sbjct: 57 SFGEVTEATV---IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATE 113
Query: 220 ENIIP 206
+ P
Sbjct: 114 RSSAP 118
>gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/60 (46%), Positives = 43/60 (71%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV A++ D SRGFGFVT+A+ +EA A++ MDGK+L+G+ ++V++AQE
Sbjct: 61 TFGDVMEAKI---INDRETGRSRGFGFVTFASPDEANAAVEAMDGKDLQGRSIRVNIAQE 117
>emb|CCX33985.1| Similar to Uncharacterized RNA-binding protein C4F6.14; acc. no.
O74400 [Pyronema omphalodes CBS 100304]
Length = 745
Score = 58.9 bits (141), Expect = 7e-07
Identities = 25/40 (62%), Positives = 36/40 (90%)
Frame = -3
Query: 343 KGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQ 224
K SRGFGFVT+A E+AQ+A++EMDGKE++G+++KV LA+
Sbjct: 59 KQSRGFGFVTFADAEDAQRAVKEMDGKEVEGRKIKVELAE 98
>gb|AFP57455.1| RNA-binding glycine-rich protein [Nicotiana undulata]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV ARV G SRGFGFV ++ +E A +AI+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQE 116
>gb|AFP57453.1| RNA-binding glycine-rich protein [Nicotiana rustica]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV ARV G SRGFGFV ++ +E A +AI+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQE 116
>gb|AFP57449.1| RNA-binding glycine-rich protein [Nicotiana glauca]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV ARV G SRGFGFV ++ +E A +AI+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQE 116
>gb|AFP57448.1| RNA-binding glycine-rich protein [Nicotiana clevelandii]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV ARV G SRGFGFV ++ +E A +AI+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQE 116
>ref|XP_004958226.1| PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like
isoform X1 [Setaria italica]
gi|514735717|ref|XP_004958227.1| PREDICTED: glycine-rich
RNA-binding protein 3, mitochondrial-like isoform X2
[Setaria italica]
Length = 403
Score = 57.4 bits (137), Expect = 2e-06
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = -3
Query: 397 FGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+GDV ARV G SRGFGFVTY + EEA AI MDGKEL+G+ VKV+ A +
Sbjct: 55 YGDVLEARVIMDRESG---RSRGFGFVTYTSSEEASAAITAMDGKELQGRPVKVNHAND 110
>gb|AFP57452.1| RNA-binding glycine-rich protein [Nicotiana repanda]
Length = 144
Score = 57.0 bits (136), Expect = 3e-06
Identities = 29/60 (48%), Positives = 42/60 (70%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV ARV G SRGFGFV ++ +E A +AI+ MDG+EL+G+ ++V++AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVTIAQE 116
>gb|AFP57450.1| RNA-binding glycine-rich protein [Nicotiana goodspeedii]
Length = 144
Score = 57.0 bits (136), Expect = 3e-06
Identities = 29/60 (48%), Positives = 42/60 (70%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV ARV G SRGFGFV ++ +E A +AI+ MDG+EL+G+ ++V++AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVNIAQE 116
>ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera] gi|297740158|emb|CBI30340.3| unnamed
protein product [Vitis vinifera]
Length = 133
Score = 57.0 bits (136), Expect = 3e-06
Identities = 30/58 (51%), Positives = 39/58 (67%)
Frame = -3
Query: 397 FGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQ 224
+G V A++ D V S+GFGFVT+A+EEEAQKA EMDGKEL G+ + V A+
Sbjct: 57 YGQVVEAKI---VMDRVSDRSKGFGFVTFASEEEAQKARTEMDGKELNGRTIFVDYAK 111
>gb|ACN30953.1| unknown [Zea mays]
Length = 184
Score = 57.0 bits (136), Expect = 3e-06
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
SFG+V ARV D SRGFGFV Y+ + A++AI MDGKE+ G+QV+V++A E
Sbjct: 59 SFGEVTEARV---ITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANE 115
>gb|ACG40707.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 153
Score = 57.0 bits (136), Expect = 3e-06
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
SFG+V ARV D SRGFGFV Y+ + A++AI MDGKE+ G+QV+V++A E
Sbjct: 59 SFGEVTEARV---ITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANE 115
>ref|NP_001150149.1| LOC100283778 [Zea mays] gi|195605606|gb|ACG24633.1| glycine-rich
RNA-binding protein 2 [Zea mays]
gi|195606158|gb|ACG24909.1| glycine-rich RNA-binding
protein 2 [Zea mays] gi|195637130|gb|ACG38033.1|
glycine-rich RNA-binding protein 2 [Zea mays]
gi|195645710|gb|ACG42323.1| glycine-rich RNA-binding
protein 2 [Zea mays] gi|238009788|gb|ACR35929.1| unknown
[Zea mays] gi|413951537|gb|AFW84186.1| glycine-rich
RNA-binding protein 2 [Zea mays]
Length = 156
Score = 57.0 bits (136), Expect = 3e-06
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
SFG+V ARV D SRGFGFV Y+ + A++AI MDGKE+ G+QV+V++A E
Sbjct: 59 SFGEVTEARV---ITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANE 115
>ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|2624328|emb|CAA05729.1| OsGRP2 [Oryza sativa Japonica
Group] gi|19386753|dbj|BAB86134.1| OsGRP2 [Oryza sativa
Japonica Group] gi|20805007|dbj|BAB92683.1| OsGRP2
[Oryza sativa Japonica Group]
gi|113534726|dbj|BAF07109.1| Os01g0916600 [Oryza sativa
Japonica Group] gi|125528847|gb|EAY76961.1| hypothetical
protein OsI_04919 [Oryza sativa Indica Group]
gi|125573102|gb|EAZ14617.1| hypothetical protein
OsJ_04542 [Oryza sativa Japonica Group]
gi|215765299|dbj|BAG86996.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215768370|dbj|BAH00599.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 150
Score = 57.0 bits (136), Expect = 3e-06
Identities = 29/60 (48%), Positives = 40/60 (66%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
SFGDV ARV D SRGFGFV++A ++A+ A+ MDGKEL+G+ ++V+ A E
Sbjct: 59 SFGDVTEARV---INDRESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANE 115
>dbj|BAA22083.1| RNA binding protein [Nicotiana sylvestris]
gi|295393569|gb|ADG03640.1| RNA-binding glycine-rich
protein [Nicotiana tabacum] gi|399931789|gb|AFP57444.1|
RNA-binding glycine-rich protein [Nicotiana tabacum]
gi|399931793|gb|AFP57446.1| RNA-binding glycine-rich
protein [Nicotiana acuminata]
gi|399931795|gb|AFP57447.1| RNA-binding glycine-rich
protein [Nicotiana alata] gi|399931809|gb|AFP57454.1|
RNA-binding glycine-rich protein [Nicotiana sylvestris]
Length = 144
Score = 56.6 bits (135), Expect = 3e-06
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV ARV G SRGFGFV ++ +E A +AI+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDARVIVDRDSG---RSRGFGFVNFSDDECANEAIKAMDGQELQGRNIRVSIAQE 116
>gb|AFP57445.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 144
Score = 56.6 bits (135), Expect = 3e-06
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -3
Query: 400 SFGDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQE 221
+FGDV A V DG SRGFGFV ++ +E A +AI+ MDG+EL+G+ ++VS+AQE
Sbjct: 60 TFGDVVDAGVIV---DGDSGRSRGFGFVNFSDDECANEAIKAMDGQELQGRNIRVSIAQE 116
>dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = -3
Query: 394 GDVKSARVKYRYRDGVKKGSRGFGFVTYATEEEAQKAIQEMDGKELKGKQVKVSLAQ 224
G V ARV Y G SRGFGFVTY T +E QKA+ +DG ++ G+Q++V++A+
Sbjct: 207 GSVLGARVIYDRESG---RSRGFGFVTYGTSDEVQKAVSNLDGTDMDGRQIRVTVAE 260