BLASTX nr result

ID: Ephedra28_contig00012796 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00012796
         (623 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK23836.1| unknown [Picea sitchensis]                              88   2e-15

>gb|ABK23836.1| unknown [Picea sitchensis]
          Length = 124

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 62/145 (42%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
 Frame = -1

Query: 572 LKRSGISFRRQGSSGLAWCENWIPAEMDGKAPTGHRLIISAPSPKDETGDGSSNDRPEXX 393
           LKRS ISFRRQGSSGLAW ENWI AE+DG+A  G    +  P P      G++N   +  
Sbjct: 4   LKRSDISFRRQGSSGLAWEENWIAAEVDGEAGGGP---VFPPPP-----SGTTNSHRD-- 53

Query: 392 XXXXXXXXXXXXXXXXXSARLRHSKSVGFIGAGYSRSRDHRVGSSDAYHHDDHEGGTPLS 213
                            S +LRHS+SVG IGAGY R RDHR             G  P +
Sbjct: 54  ---------LHYSATTASPQLRHSRSVGLIGAGYGRLRDHR----------GLNGLNPAN 94

Query: 212 DNKR-HRH--HKSQSRIVKWIKKTF 147
             +R H+   HKSQSR+++  K+TF
Sbjct: 95  TQQRTHKETGHKSQSRVLRRFKRTF 119


Top