BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00012730
         (961 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAC82626.1| pol-like protein [Ciona intestinalis]                  60   2e-06
dbj|BAC82624.1| pol-like protein [Ciona intestinalis]                  58   5e-06

>dbj|BAC82626.1| pol-like protein [Ciona intestinalis]
          Length = 1263

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
 Frame = +1

Query: 484 KNHYESIFRSSN----PSHANIEEITKRIPCI-IDPDVRIEMN-EPSLLRNSPLVKYLGN 645
           K ++E+++ SSN     S + I+E T  + C  +D +   E   + ++ +    +K + N
Sbjct: 412 KEYFETLYSSSNNPGRTSKSKIKEYTNSLMCPRLDAEKANECEGKLTVDKCYEALKTMQN 471

Query: 646 SRSPRIDGLPAEFYKNLCLVIKMAF-SACTILL*KGSLSENIN*GIIKLIPKSR----YF 810
           ++SP +DG PAEFYK     I     +A      KG+ S  +N G++ LIPK      Y 
Sbjct: 472 NKSPGLDGFPAEFYKVFWKEINSTLVNAFNHAFEKGAFSGQMNWGVVTLIPKPEKDLLYP 531

Query: 811 TNWRHITLLNNSNRITAFKIKYHLDDIIIKDQINSKLCLVRGR 939
            N+R ITLLN   +I A  I   + +++       +   ++GR
Sbjct: 532 ENYRPITLLNADYKIAAKAINNRIKNVLTTIIAPEQTGFIKGR 574


>dbj|BAC82624.1| pol-like protein [Ciona intestinalis]
          Length = 1239

 Score = 58.2 bits (139), Expect = 5e-06
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 14/154 (9%)
 Frame = +1

Query: 487 NHYESIFRSSNPSHANIEEITKRIPCIIDPDVRIEMN---EPSLLRNSPL--VKYLGNSR 651
           N Y+ ++   N ++ N E+I   +  +  P +  E +   E  +     L  +  + N++
Sbjct: 428 NFYQELYEP-NRTNWNTEQIAAHLASLSPPRLTPEQSMVLETEVTEKECLFAINSMRNNK 486

Query: 652 SPRIDGLPAEFYKNLCLVIKMAFSACTILL*K-GSLSENIN*GIIKLIPKS----RYFTN 816
           SP  DGLP EFYK     +K  F        K G LS     G+I L+ K      Y TN
Sbjct: 487 SPGNDGLPIEFYKAFWPTLKPVFMQAVQFSEKTGILSTTQTQGVITLVQKKDKDPHYATN 546

Query: 817 WRHITLLNNSNRITA----FKIKYHLDDIIIKDQ 906
           +R ITLLN+  +I +     ++K  LDD+I KDQ
Sbjct: 547 YRPITLLNSDYKIISKVINNRMKCFLDDLIHKDQ 580