BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00012715
         (363 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putativ...    72   8e-11
gb|EOY32827.1| RNA-binding KH domain-containing protein [Theobro...    72   1e-10
ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabi...    72   1e-10
gb|AAM64563.1| rev interacting protein mis3-like [Arabidopsis th...    72   1e-10
ref|XP_002979441.1| hypothetical protein SELMODRAFT_268270 [Sela...    70   3e-10
ref|XP_004233160.1| PREDICTED: KRR1 small subunit processome com...    70   4e-10
ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arab...    69   5e-10
emb|CBI22501.3| unnamed protein product [Vitis vinifera]               69   5e-10
ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mi...    69   5e-10
ref|XP_006353009.1| PREDICTED: KRR1 small subunit processome com...    68   1e-09
ref|XP_002310107.1| hypothetical protein POPTR_0007s08410g [Popu...    68   1e-09
ref|XP_006478051.1| PREDICTED: KRR1 small subunit processome com...    67   2e-09
ref|XP_006287914.1| hypothetical protein CARUB_v10001149mg [Caps...    66   4e-09
gb|ESW13588.1| hypothetical protein PHAVU_008G209100g [Phaseolus...    66   5e-09
ref|XP_006441061.1| hypothetical protein CICLE_v10020638mg [Citr...    65   7e-09
ref|XP_004491162.1| PREDICTED: KRR1 small subunit processome com...    65   1e-08
ref|XP_004491161.1| PREDICTED: KRR1 small subunit processome com...    64   2e-08
gb|EXC41712.1| hypothetical protein L484_000599 [Morus notabilis]      62   8e-08
ref|XP_006399335.1| hypothetical protein EUTSA_v10013751mg [Eutr...    62   8e-08
ref|XP_004969735.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small s...    62   1e-07

>ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
           gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly
           protein mis3, putative [Ricinus communis]
          Length = 377

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 35/78 (44%), Positives = 51/78 (65%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQE+QAEK +ENKRKRD AF+PP+E +  D   S ++++D++      I  S+K+KAK+
Sbjct: 290 EKQERQAEKTAENKRKRDTAFVPPEEHRDQDAGKSEDKNNDVA-----AIALSIKKKAKD 344

Query: 178 LSNKKPVVDNGVETYLAA 125
              K  V +   E Y+AA
Sbjct: 345 FGKKNAVENINAEEYIAA 362


>gb|EOY32827.1| RNA-binding KH domain-containing protein [Theobroma cacao]
          Length = 445

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 36/79 (45%), Positives = 52/79 (65%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQA+K +ENKRKR+ +F+PPKE    D     +R S+  K+++  +T S+K+KAKE
Sbjct: 357 EKQEKQAQKTAENKRKREESFVPPKEPVKQD-----SRESENDKEDVAVLTMSLKQKAKE 411

Query: 178 LSNKKPVVDNGVETYLAAP 122
              +K   +   E Y+AAP
Sbjct: 412 FGKQKSFQNINAEEYIAAP 430


>ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
           gi|13878039|gb|AAK44097.1|AF370282_1 putative rev
           interacting protein mis3 [Arabidopsis thaliana]
           gi|10178284|emb|CAC08342.1| rev interacting protein
           mis3-like [Arabidopsis thaliana]
           gi|23296614|gb|AAN13132.1| putative rev interacting
           protein mis3 [Arabidopsis thaliana]
           gi|332003916|gb|AED91299.1| RNA-binding KH
           domain-containing protein [Arabidopsis thaliana]
          Length = 391

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQ+EK +ENKRKRDA+F+PP+E  P + + +AN+S D  K ++  +T S+K K KE
Sbjct: 299 EKQEKQSEKSTENKRKRDASFLPPEE--PMNNNSNANKSED-GKNDITELTNSLKSKTKE 355

Query: 178 LSNKKPVVDN-GVETYLAAPVKFSQNDEKGDQR 83
           L  +K   +    E Y+A P   +    K  ++
Sbjct: 356 LKKQKKTHERVNAEEYIAGPSSSADKSSKKSKK 388


>gb|AAM64563.1| rev interacting protein mis3-like [Arabidopsis thaliana]
          Length = 391

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQ+EK +ENKRKRDA+F+PP+E  P + + +AN+S D  K ++  +T S+K K KE
Sbjct: 299 EKQEKQSEKSTENKRKRDASFLPPEE--PMNNNSNANKSED-GKNDITELTNSLKSKTKE 355

Query: 178 LSNKKPVVDN-GVETYLAAPVKFSQNDEKGDQR 83
           L  +K   +    E Y+A P   +    K  ++
Sbjct: 356 LKKQKKTHERVNAEEYIAGPSSSADKSSKKSKK 388


>ref|XP_002979441.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
           gi|300152689|gb|EFJ19330.1| hypothetical protein
           SELMODRAFT_268270 [Selaginella moellendorffii]
          Length = 373

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 32/77 (41%), Positives = 57/77 (74%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EK+++Q EK +ENKRKRD++F+PPKE K S+++G+   SS +SK ++  +  ++K K+++
Sbjct: 300 EKKQQQLEKAAENKRKRDSSFVPPKETKKSERAGT---SSGVSKADVTAMAQNLKEKSEK 356

Query: 178 LSNKKPVVDNGVETYLA 128
           +  K+  +D+ V+ YLA
Sbjct: 357 VLPKQKRIDDSVQNYLA 373


>ref|XP_004233160.1| PREDICTED: KRR1 small subunit processome component homolog [Solanum
           lycopersicum]
          Length = 382

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 35/91 (38%), Positives = 56/91 (61%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQ KQAEK++ENK+KR+ AF+PP+E K  ++       S++ K ++  + +S+KRKAKE
Sbjct: 297 EKQVKQAEKVAENKKKREEAFVPPEEPKTHNQD-----VSNVDKDDVTAMASSLKRKAKE 351

Query: 178 LSNKKPVVDNGVETYLAAPVKFSQNDEKGDQ 86
              +K +     E ++A P K S+   K  +
Sbjct: 352 FRKQKSIDKINAEEFIAGPSKPSKKKSKSSR 382


>ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
           lyrata] gi|297317162|gb|EFH47584.1| hypothetical protein
           ARALYDRAFT_487679 [Arabidopsis lyrata subsp. lyrata]
          Length = 391

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQ EK +ENKRKRDA+F+PP+E  P + +  AN S D  K ++  +T S+K K KE
Sbjct: 299 EKQEKQTEKSTENKRKRDASFLPPEE--PMNNNSKANNSED-GKNDITELTQSLKSKTKE 355

Query: 178 LSNKKPVVDN-GVETYLAAP 122
           L  +K   +    E Y+A P
Sbjct: 356 LKKQKKTHERVNAEEYIAGP 375


>emb|CBI22501.3| unnamed protein product [Vitis vinifera]
          Length = 424

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 37/78 (47%), Positives = 51/78 (65%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           +K EKQAEK +ENKRKR+AAF+PP E    D S SA+  +D++   M     S+K+KAKE
Sbjct: 334 QKLEKQAEKTAENKRKREAAFVPPMEPMVQDPSKSADDKNDVAAMAM-----SLKKKAKE 388

Query: 178 LSNKKPVVDNGVETYLAA 125
              +K + +   ETY+AA
Sbjct: 389 FGKQKSLENVNPETYIAA 406


>ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis
           vinifera]
          Length = 386

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 37/78 (47%), Positives = 51/78 (65%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           +K EKQAEK +ENKRKR+AAF+PP E    D S SA+  +D++   M     S+K+KAKE
Sbjct: 296 QKLEKQAEKTAENKRKREAAFVPPMEPMVQDPSKSADDKNDVAAMAM-----SLKKKAKE 350

Query: 178 LSNKKPVVDNGVETYLAA 125
              +K + +   ETY+AA
Sbjct: 351 FGKQKSLENVNPETYIAA 368


>ref|XP_006353009.1| PREDICTED: KRR1 small subunit processome component homolog [Solanum
           tuberosum]
          Length = 382

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITA---SVKRK 188
           EKQ KQAEK++ENK+KR+ AF+PP+E K          + D+S  + D +TA   S+KRK
Sbjct: 297 EKQVKQAEKVAENKKKREEAFVPPEEPK--------THNQDVSNVDEDDVTAMASSLKRK 348

Query: 187 AKELSNKKPVVDNGVETYLAAPVKFSQNDEKGDQ 86
           AKE   +K +     E ++A P K S+   K  +
Sbjct: 349 AKEFRKQKSIDKIDAEEFIAGPSKPSKKKSKSSR 382


>ref|XP_002310107.1| hypothetical protein POPTR_0007s08410g [Populus trichocarpa]
           gi|222853010|gb|EEE90557.1| hypothetical protein
           POPTR_0007s08410g [Populus trichocarpa]
          Length = 379

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 38/78 (48%), Positives = 49/78 (62%)
 Frame = -3

Query: 361 HEKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAK 182
           HEKQEKQ EK +ENKRKRDAAF+PPKE    D S  A+ + D++   M     S+K+KAK
Sbjct: 297 HEKQEKQLEKTAENKRKRDAAFVPPKE----DPSTYADNNKDVAAMAM-----SLKKKAK 347

Query: 181 ELSNKKPVVDNGVETYLA 128
           E   +K   +   E Y+A
Sbjct: 348 EFGKQKSFENVNPEDYIA 365


>ref|XP_006478051.1| PREDICTED: KRR1 small subunit processome component homolog [Citrus
           sinensis]
          Length = 376

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 36/78 (46%), Positives = 52/78 (66%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQAEK +ENKRKRDAAFIPP+E    + S + ++++D++      +  S+K KAK+
Sbjct: 292 EKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSSEAEDKTNDVA-----AMAKSLKEKAKK 346

Query: 178 LSNKKPVVDNGVETYLAA 125
           L  +K   +   E Y+AA
Sbjct: 347 LRKQKFAENINPEEYIAA 364


>ref|XP_006287914.1| hypothetical protein CARUB_v10001149mg [Capsella rubella]
           gi|482556620|gb|EOA20812.1| hypothetical protein
           CARUB_v10001149mg [Capsella rubella]
          Length = 390

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQ EK +ENKRKRDA+F+PP+E   +  + S +  SDI++     +T S+K K KE
Sbjct: 302 EKQEKQTEKSTENKRKRDASFLPPEEPVNNKSNNSEDGKSDITE-----LTYSLKSKTKE 356

Query: 178 LSNKKPVVDN-GVETYLAAP 122
           L  +K   +    E Y+AAP
Sbjct: 357 LKKQKKTHERVNAEDYIAAP 376


>gb|ESW13588.1| hypothetical protein PHAVU_008G209100g [Phaseolus vulgaris]
          Length = 389

 Score = 65.9 bits (159), Expect = 5e-09
 Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQ-KPSDKSGSANRSSDISKQEMDTITASVKRKAK 182
           EKQEKQAEK +ENKRKRD AFIPPKE   P DKS  AN        ++  IT S+K+K +
Sbjct: 301 EKQEKQAEKTAENKRKRDEAFIPPKEPVNPVDKSEDAN-------NKVTDITMSLKKKTE 353

Query: 181 ELSNKKPVVDNGVETYLAAPVKFSQNDEKGDQR 83
           +   +K   +   E+Y+    + +   +   QR
Sbjct: 354 KFGKRKSEENINAESYIMGSSEQTSGKKSKKQR 386


>ref|XP_006441061.1| hypothetical protein CICLE_v10020638mg [Citrus clementina]
           gi|557543323|gb|ESR54301.1| hypothetical protein
           CICLE_v10020638mg [Citrus clementina]
          Length = 376

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 35/78 (44%), Positives = 51/78 (65%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQAEK +ENKRKRDAAFIPP+E    +   + ++++D++      +  S+K KAK+
Sbjct: 292 EKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVA-----AMAKSLKEKAKK 346

Query: 178 LSNKKPVVDNGVETYLAA 125
           L  +K   +   E Y+AA
Sbjct: 347 LRKQKFAENINPEEYIAA 364


>ref|XP_004491162.1| PREDICTED: KRR1 small subunit processome component homolog [Cicer
           arietinum]
          Length = 382

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQ-KPSDKSGSANRSSDISKQEMDTITASVKRKAK 182
           E+QEKQAEK +ENKRKR+ AFIPPKE  KP D S  AN +       +  +  S+K+KAK
Sbjct: 296 ERQEKQAEKTAENKRKREEAFIPPKEHAKPVDNSEDANNN-------VSEMAKSLKKKAK 348

Query: 181 ELSNKKPVVDNGVETYL 131
           +   +K   +   ETY+
Sbjct: 349 KFEKRKSEENINAETYI 365


>ref|XP_004491161.1| PREDICTED: KRR1 small subunit processome component homolog [Cicer
           arietinum]
          Length = 382

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQ-KPSDKSGSANRSSDISKQEMDTITASVKRKAK 182
           E+QEKQAEK +ENKRKR+ AFIPPKE  KP D S  A  ++++S+  M     S+K+KAK
Sbjct: 296 ERQEKQAEKTAENKRKREEAFIPPKEHAKPVDNSDDA--TNNVSEMAM-----SLKKKAK 348

Query: 181 ELSNKKPVVDNGVETYL 131
           +   +K   +   ETY+
Sbjct: 349 KFGKRKSEENINAETYI 365


>gb|EXC41712.1| hypothetical protein L484_000599 [Morus notabilis]
          Length = 367

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 35/77 (45%), Positives = 48/77 (62%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQAEK +ENKRKR+AAF+PP+E    D++   N + D++      +  S+K+KAKE
Sbjct: 281 EKQEKQAEKTAENKRKREAAFVPPEEPVKQDRN-VKNDAEDVA-----AMAKSLKKKAKE 334

Query: 178 LSNKKPVVDNGVETYLA 128
              +K       E YLA
Sbjct: 335 FGKQKMDETVNAEAYLA 351


>ref|XP_006399335.1| hypothetical protein EUTSA_v10013751mg [Eutrema salsugineum]
           gi|557100425|gb|ESQ40788.1| hypothetical protein
           EUTSA_v10013751mg [Eutrema salsugineum]
          Length = 393

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQKPSDKSGSANRSSDISKQEMDTITASVKRKAKE 179
           EKQEKQ EK +E KR+RDA+F+PP+E  P   S ++N+S +  K+++  +T S+K K KE
Sbjct: 302 EKQEKQTEKSTEKKRQRDASFLPPEE--PMQNSNNSNKSEE-GKKDITELTKSLKSKTKE 358

Query: 178 L-SNKKPVVDNGVETYLA 128
           L   KK       E Y+A
Sbjct: 359 LKKQKKTHASVNAEEYIA 376


>ref|XP_004969735.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
           component homolog [Setaria italica]
          Length = 398

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
 Frame = -3

Query: 358 EKQEKQAEKISENKRKRDAAFIPPKEQK--PSDKSGSANRSSDISKQEMDTITASVKRKA 185
           EK EKQ+ K  ENKRKR+AAF+PPKE    PS+   +AN +S I       +  S+K+KA
Sbjct: 309 EKLEKQSGKAEENKRKREAAFVPPKENTTGPSESDKTANDNSGIG-----DLAKSLKKKA 363

Query: 184 KELSNKKPVVDNGVETYLAAPVKFSQNDEK 95
           KE    +   +  VE+YLA+  +     EK
Sbjct: 364 KEFRKNEAQENVRVESYLASNEESCPKKEK 393