BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00012564
         (1784 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   686   0.0  
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       680   0.0  
gb|ESW25208.1| hypothetical protein PHAVU_003G016600g [Phaseolus...   679   0.0  
gb|ESW25207.1| hypothetical protein PHAVU_003G016600g [Phaseolus...   679   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   679   0.0  
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...   679   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   677   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   677   0.0  
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   677   0.0  
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   677   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   676   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   676   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   674   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   673   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      673   0.0  
gb|EMJ26460.1| hypothetical protein PRUPE_ppa001524mg [Prunus pe...   672   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   671   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   671   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   670   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      669   0.0  

>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  686 bits (1771), Expect = 0.0
 Identities = 344/589 (58%), Positives = 435/589 (73%), Gaps = 11/589 (1%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            TDIY RIL  L+ G VI +KKFEFLA+SSSQLR++S+WMFAS   ++A+ IR WMG F  
Sbjct: 422  TDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQ 481

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            I+NVAK A+R+GQS  SS ET  + +++ E I D+    +G  YIFSDGIG+IS  FA +
Sbjct: 482  IRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARR 541

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PS FQIRY GYKGVVA+DP  +S KLSLRNSM KY S N  LDVL W+K
Sbjct: 542  VAVKCGLQ-YTPSCFQIRYGGYKGVVAVDP-YSSMKLSLRNSMLKYESNNIKLDVLGWSK 599

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PCYLNRQ++ LLSTLGVKD VFE  Q +A+  +D+ L D  KA E L+ M  GEN NI
Sbjct: 600  YQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNI 659

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L +ML CGY P +EP+L MML+ FRASKLL+L+ R+RIF+ NGR +MGCLDE+RTL+YG+
Sbjct: 660  LKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQ 719

Query: 835  VFIQITHPSEKKKCYDDKYQGY--------LTVEGKVVVAKNPCLHPGDIRILIAVKSPK 680
            VF+Q T    +++ Y++ +             +EG VVVAKNPCLHPGDIR+L AV  P 
Sbjct: 720  VFVQFTGTG-RRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPA 778

Query: 679  LQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLD 500
            L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  L+PP+ +QPMDY   P  QLD
Sbjct: 779  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLD 838

Query: 499  HEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKT 320
            H+VT++E++E+F N++VND+LGIIAN H++FAD+EPDMA S  C +LA+L SIAVDFPKT
Sbjct: 839  HDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKT 898

Query: 319  GIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKG---VATLDNNIRLDNKKD 149
            G+PAE+P +L PKEYPDFMEK DK TY S++++GKL++ VK     A+   N  +D  + 
Sbjct: 899  GVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARK 958

Query: 148  IYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
             YD ++IV GFE Y+DEA  YK  YD+ +  LM +Y   +EAEI+SG I
Sbjct: 959  SYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI 1007


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  680 bits (1754), Expect = 0.0
 Identities = 343/588 (58%), Positives = 429/588 (72%), Gaps = 10/588 (1%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            TDIY+RIL  LQ G+VI  KKFEFLA+SSSQLR++S+WMFAS   ++A  IR WMG+F  
Sbjct: 114  TDIYERILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQ 173

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            I+NVAK A+R+GQS  SS ET  + +++ ++I D+E+  +G  Y+FSDGIG+IS  FA +
Sbjct: 174  IRNVAKYAARLGQSFGSSRETLSVGRHEIKYIPDVEV--HGTNYVFSDGIGKISADFAHR 231

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VAKKCG     PSAFQIRY GYKGVVA+DP  +  KLSLR SM KY S N  LDVL W+K
Sbjct: 232  VAKKCGLQ-HTPSAFQIRYGGYKGVVAVDP-YSPMKLSLRKSMLKYESNNTKLDVLGWSK 289

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PCYLNRQ++ L+STLGVKD VF+  Q +A+  +D+ L D  KA E L  M  GEN NI
Sbjct: 290  YQPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNI 349

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L +ML CGY P +EP+L MML+ FRASKLL+L+ R RIF+  GR++MGCLDE+RTL+YG+
Sbjct: 350  LKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQ 409

Query: 835  VFIQITHPS------EKKKCYDDKYQGY-LTVEGKVVVAKNPCLHPGDIRILIAVKSPKL 677
            VF+Q T         E     D     Y   ++G VVVAKNPCLHPGDIR+L AV  P L
Sbjct: 410  VFVQFTGAGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPAL 469

Query: 676  QHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDH 497
             HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  LIPP+  QPMDY   P  QLDH
Sbjct: 470  HHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQLDH 529

Query: 496  EVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTG 317
            +VT++E++E+F N+MVND LG+IAN H++FAD+EP+MA S  C+ LA+L SIAVDFPKTG
Sbjct: 530  DVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTG 589

Query: 316  IPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLDNNIRL---DNKKDI 146
            +PAE+P +L PKEYPDFMEK DK TY S++++GKL+R VK   T  ++I     D  +  
Sbjct: 590  VPAEIPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARRS 649

Query: 145  YDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
            YDT+L V GFE Y+DEA  YK  YD  +  LM +Y   +EAE +SG I
Sbjct: 650  YDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGI 697


>gb|ESW25208.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
            gi|561026569|gb|ESW25209.1| hypothetical protein
            PHAVU_003G016600g [Phaseolus vulgaris]
          Length = 1122

 Score =  679 bits (1753), Expect = 0.0
 Identities = 347/602 (57%), Positives = 453/602 (75%), Gaps = 8/602 (1%)
 Frame = -2

Query: 1783 SSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTG 1604
            S+DLS    +R+ KK T++Y+RILD+L+ GI+I +KKFEFLA+SSSQLRE+SLWMFA TG
Sbjct: 423  STDLS----SRAQKK-TEVYKRILDILKNGILIGDKKFEFLAFSSSQLRENSLWMFAPTG 477

Query: 1603 I-VSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKK 1427
               SA  IR+WMGNF  I+NVAK A+R+GQS  SSTET  +++++ E I+D++    G +
Sbjct: 478  TGCSAAFIREWMGNFSRIRNVAKYAARLGQSFGSSTETLSVRRDEIEIIHDVKRTCGGIE 537

Query: 1426 YIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSM 1247
            Y+FSDGIG+IS+ FA++VAKKCG+D   PSAFQIRY GYKGVVA+DP  + +KLSLRNSM
Sbjct: 538  YVFSDGIGKISLEFAKRVAKKCGYDCT-PSAFQIRYGGYKGVVAVDPE-SPYKLSLRNSM 595

Query: 1246 RKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRN 1067
            RKY S N  LDVL  +K++PC+LNRQ+I LLSTLG+KD VFE  Q +A+  +++ L D  
Sbjct: 596  RKYDSDNTKLDVLGRSKFQPCFLNRQLITLLSTLGIKDGVFEKKQREAVDQLNTILTDSL 655

Query: 1066 KAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNG 887
            KA EVL  M +GE  N+L +ML+CGY P  EP+L MML+ FRASKLLEL+ ++RIF+  G
Sbjct: 656  KAQEVLDLMSTGEITNVLKEMLICGYKPNEEPFLSMMLQVFRASKLLELRLKSRIFIPKG 715

Query: 886  RALMGCLDETRTLKYGEVFIQITHP-----SEKKKCYDDKYQGYLTVEGKVVVAKNPCLH 722
            RA+MGCLDET TL+YG+VF+Q ++      S+   C  D  + Y+ V GKVVVAKNPCLH
Sbjct: 716  RAMMGCLDETSTLEYGQVFVQFSNNRLRDLSDDDSCSYDLPKTYMVV-GKVVVAKNPCLH 774

Query: 721  PGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDY 542
            PGD+R+L AV  P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  L+P  + 
Sbjct: 775  PGDVRVLQAVDVPDLYHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDPELVPSGEV 834

Query: 541  QPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLR 362
            QPMDY      +LDH+VT++E++E+F N++VND+LGIIAN H +FAD +P  A S++CL+
Sbjct: 835  QPMDYTPSSTIELDHDVTIEEVEEYFCNYIVNDSLGIIANAHTVFADNQPGKAMSAQCLQ 894

Query: 361  LAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATL 182
            LA+L S AVDFPKTG+PA +P+EL+ KEYPDFMEK DK TY S  ++GKL+R VK ++  
Sbjct: 895  LAKLFSTAVDFPKTGVPAVIPRELYAKEYPDFMEKSDKVTYKSPNVIGKLFREVKEISAD 954

Query: 181  D--NNIRLDNKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISG 8
            D  ++   +  +  YDTE+ V GF  YVD+A+ YK  YD  +  LM +Y   +E EI+SG
Sbjct: 955  DSISSFTQEVARRSYDTEMEVDGFMDYVDDAIYYKTNYDYKLGNLMDYYGIKTEGEILSG 1014

Query: 7    NI 2
            NI
Sbjct: 1015 NI 1016


>gb|ESW25207.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
          Length = 1145

 Score =  679 bits (1753), Expect = 0.0
 Identities = 347/602 (57%), Positives = 453/602 (75%), Gaps = 8/602 (1%)
 Frame = -2

Query: 1783 SSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTG 1604
            S+DLS    +R+ KK T++Y+RILD+L+ GI+I +KKFEFLA+SSSQLRE+SLWMFA TG
Sbjct: 446  STDLS----SRAQKK-TEVYKRILDILKNGILIGDKKFEFLAFSSSQLRENSLWMFAPTG 500

Query: 1603 I-VSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKK 1427
               SA  IR+WMGNF  I+NVAK A+R+GQS  SSTET  +++++ E I+D++    G +
Sbjct: 501  TGCSAAFIREWMGNFSRIRNVAKYAARLGQSFGSSTETLSVRRDEIEIIHDVKRTCGGIE 560

Query: 1426 YIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSM 1247
            Y+FSDGIG+IS+ FA++VAKKCG+D   PSAFQIRY GYKGVVA+DP  + +KLSLRNSM
Sbjct: 561  YVFSDGIGKISLEFAKRVAKKCGYDCT-PSAFQIRYGGYKGVVAVDPE-SPYKLSLRNSM 618

Query: 1246 RKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRN 1067
            RKY S N  LDVL  +K++PC+LNRQ+I LLSTLG+KD VFE  Q +A+  +++ L D  
Sbjct: 619  RKYDSDNTKLDVLGRSKFQPCFLNRQLITLLSTLGIKDGVFEKKQREAVDQLNTILTDSL 678

Query: 1066 KAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNG 887
            KA EVL  M +GE  N+L +ML+CGY P  EP+L MML+ FRASKLLEL+ ++RIF+  G
Sbjct: 679  KAQEVLDLMSTGEITNVLKEMLICGYKPNEEPFLSMMLQVFRASKLLELRLKSRIFIPKG 738

Query: 886  RALMGCLDETRTLKYGEVFIQITHP-----SEKKKCYDDKYQGYLTVEGKVVVAKNPCLH 722
            RA+MGCLDET TL+YG+VF+Q ++      S+   C  D  + Y+ V GKVVVAKNPCLH
Sbjct: 739  RAMMGCLDETSTLEYGQVFVQFSNNRLRDLSDDDSCSYDLPKTYMVV-GKVVVAKNPCLH 797

Query: 721  PGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDY 542
            PGD+R+L AV  P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  L+P  + 
Sbjct: 798  PGDVRVLQAVDVPDLYHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDPELVPSGEV 857

Query: 541  QPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLR 362
            QPMDY      +LDH+VT++E++E+F N++VND+LGIIAN H +FAD +P  A S++CL+
Sbjct: 858  QPMDYTPSSTIELDHDVTIEEVEEYFCNYIVNDSLGIIANAHTVFADNQPGKAMSAQCLQ 917

Query: 361  LAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATL 182
            LA+L S AVDFPKTG+PA +P+EL+ KEYPDFMEK DK TY S  ++GKL+R VK ++  
Sbjct: 918  LAKLFSTAVDFPKTGVPAVIPRELYAKEYPDFMEKSDKVTYKSPNVIGKLFREVKEISAD 977

Query: 181  D--NNIRLDNKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISG 8
            D  ++   +  +  YDTE+ V GF  YVD+A+ YK  YD  +  LM +Y   +E EI+SG
Sbjct: 978  DSISSFTQEVARRSYDTEMEVDGFMDYVDDAIYYKTNYDYKLGNLMDYYGIKTEGEILSG 1037

Query: 7    NI 2
            NI
Sbjct: 1038 NI 1039


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  679 bits (1753), Expect = 0.0
 Identities = 343/601 (57%), Positives = 441/601 (73%), Gaps = 7/601 (1%)
 Frame = -2

Query: 1783 SSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTG 1604
            S+DLS  T  R T+    IY R+L VL++GIV+  KKFEFLA+SSSQLRE+SLWMFA T 
Sbjct: 411  STDLSPRTSTRKTR----IYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTD 466

Query: 1603 IVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKY 1424
              SAD+IR  MG+F  I+NVAK A+R+GQS  SSTET  + +N+ E I D+ +   G KY
Sbjct: 467  EDSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKY 526

Query: 1423 IFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMR 1244
            +FSDGIG+IS  FAE+VAKKCG+    PSAFQIRY GYKGVVA+DPT +S KLSLR SM 
Sbjct: 527  VFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPT-SSMKLSLRKSMS 585

Query: 1243 KYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNK 1064
            KY S N  LDVL+ +KY+PC+LNRQ+I LLSTL V+D VF   Q  A+  +++ L D  K
Sbjct: 586  KYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLK 645

Query: 1063 AIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGR 884
            A E L  M +GE+ N+L ++LMCGY P  EP+L MML+ FRASKLLEL+ + RIF+ +GR
Sbjct: 646  AEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGR 705

Query: 883  ALMGCLDETRTLKYGEVFIQITHPSEKKK----CYDDKYQGYLTVEGKVVVAKNPCLHPG 716
            A+MGCLDETRTL+YG+VF+Q +    ++     C          +EGKVVVAKNPCLHPG
Sbjct: 706  AMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSCFIIEGKVVVAKNPCLHPG 765

Query: 715  DIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQP 536
            D+R+L AV  P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  LIPP+  QP
Sbjct: 766  DVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQP 825

Query: 535  MDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLA 356
            MDY   PP ++D +VT++E++E+FVN++VND+LGIIAN H +FAD + D A S  CL+LA
Sbjct: 826  MDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLA 885

Query: 355  ELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLDN 176
            +L SIAVDFPKTG+PAE+P EL+ KEYPDFMEK DK TYIS  ++G+L+R VK +A  D+
Sbjct: 886  KLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDS 945

Query: 175  NIRLDNKK---DIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGN 5
            +I    ++     YD ++ V GFE Y+++A  +K  YD  +  ++ +Y   +EAEI+SG+
Sbjct: 946  SIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGS 1005

Query: 4    I 2
            I
Sbjct: 1006 I 1006


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score =  679 bits (1751), Expect = 0.0
 Identities = 340/583 (58%), Positives = 436/583 (74%), Gaps = 3/583 (0%)
 Frame = -2

Query: 1741 KCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNF 1562
            + T+IY RIL  L+ GIVI +K+FEFLA+SSSQLRE+S WMFAS   ++A  IR WMG F
Sbjct: 423  RITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEF 482

Query: 1561 WAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFA 1382
              I+NVAK A+R+GQS SSSTET  + K++ E I+D+E++R+G  Y+FSDGIG+IS  FA
Sbjct: 483  SKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFA 542

Query: 1381 EQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSW 1202
            ++VA KC  +G+ PSAFQIR  G+KGVVA+DPT +S KLSLR SM KY S N  LDVL+W
Sbjct: 543  KKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPT-SSKKLSLRGSMSKYESENTKLDVLAW 601

Query: 1201 AKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQ 1022
            +KY+PC+LNRQ+I LLSTLGV D  FE  Q + +  +++ L D  KA E L+ M  GEN 
Sbjct: 602  SKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENT 661

Query: 1021 NILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKY 842
            NIL +ML+CGY P +EP+L MML+ FRASKLLEL+ ++RIFV+NGR++MGCLDETRTL Y
Sbjct: 662  NILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDY 721

Query: 841  GEVFIQITHPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVD 662
            G+VF+Q++    +++           V+GKVVVAKNPCLHPGD+R+L AV  P L HMVD
Sbjct: 722  GQVFVQVSGSRSEQR---------FIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVD 772

Query: 661  CIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMK 482
            C+VFPQ+G RPHPNECSGSDLDGDIYFV WD  LIP +   PMDY   P K L+HEVT++
Sbjct: 773  CVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIE 832

Query: 481  EIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEV 302
            E++E+F N++VND+LGIIAN H +FAD+EP  A SS+C  LA+L SIAVDFPKTG+PAE+
Sbjct: 833  EVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSIAVDFPKTGVPAEI 892

Query: 301  PQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLDNNIR---LDNKKDIYDTEL 131
            PQEL  KEYPDFMEK DK TY S  ++GKL+R VK +A  +  IR    +  +  YD ++
Sbjct: 893  PQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSLTRERLERFYDPDM 952

Query: 130  IVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
             V G+E YVD+A  +K  YD  +  LM++Y   +EAEI+SG I
Sbjct: 953  EVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGI 995


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  677 bits (1748), Expect = 0.0
 Identities = 343/593 (57%), Positives = 437/593 (73%), Gaps = 15/593 (2%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            T+IY+RIL  +Q+G VI +KKFEFLA+SSSQLR++S+WMFAS   ++A+ IR WMG+F  
Sbjct: 420  TNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQ 479

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            IKNVAK A+R+GQS  SS ET  + +++ E I D+++  +G  Y+FSDGIG+IS  FA +
Sbjct: 480  IKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARR 537

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PSAFQIRY GYKGVVA+DP  +S KLSLR SM KY S NN LDVL W+K
Sbjct: 538  VASKCGLQ-YTPSAFQIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSK 595

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PCYLNRQ+I LLSTLGVKD + E  Q++A+  +D+ L D  KA E L+ M  GEN NI
Sbjct: 596  YQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNI 655

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L  ML CGY P +EP+L MML+ FRASKLL+L+ ++RIF+ NGRA+MGCLDE+RTL+YG+
Sbjct: 656  LKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQ 715

Query: 835  VFIQIT-----------HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVK 689
            VF+Q T           HP    +  +  +     ++G VVVAKNPCLHPGDIR+L AV 
Sbjct: 716  VFVQFTGAGHREFSEDLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVD 771

Query: 688  SPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPK 509
             P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  +IPP+  QPM+Y   P  
Sbjct: 772  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSI 831

Query: 508  QLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDF 329
            QLDH+VT++E++E+F N++VND+LGII+N H++FAD+EPDMA S  C +LAEL SIAVDF
Sbjct: 832  QLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDF 891

Query: 328  PKTGIPAEVPQELFPKEYPDFMEK-DDKNTYISDRILGKLYRSVKGVATLDNNIRL---D 161
            PKTG+PAE+P +  PKEYPDFM+K  DK TYIS+R++GKLYR VK  A   ++  +   D
Sbjct: 892  PKTGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 951

Query: 160  NKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
              +  YD +L V GFE Y+DEA  YK  YD+ +  LM +Y   +EAEI+SG I
Sbjct: 952  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1004


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  677 bits (1747), Expect = 0.0
 Identities = 344/593 (58%), Positives = 436/593 (73%), Gaps = 15/593 (2%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            T+IY+RIL  L++G VI +KKFEFLA+SSSQLR++S+WMFAS   ++ + IR WMG+F  
Sbjct: 421  TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQ 480

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            IKNVAK A+R+GQS  SS ET  + +++ E I D+++  +G  Y+FSDGIG+IS  FA +
Sbjct: 481  IKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARR 538

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PSAFQIRY GYKGVVA+DP  +S KLSLR SM KY S NN LDVL W+K
Sbjct: 539  VASKCGLQ-YTPSAFQIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSK 596

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PCYLNRQ++ LLSTLGVKD V E  Q++A+  +D+ L D  KA E L+ M  GEN NI
Sbjct: 597  YQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNI 656

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L  ML CGY P +EP+L MML+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+
Sbjct: 657  LKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQ 716

Query: 835  VFIQIT-----------HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVK 689
            VF+Q T           HP    +  +  +     ++G VVVAKNPCLHPGDIR+L AV 
Sbjct: 717  VFVQFTGAGHREFSEDLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVD 772

Query: 688  SPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPK 509
             P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  +IPP+  Q M+Y   P  
Sbjct: 773  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832

Query: 508  QLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDF 329
            QLDH VT++E++E+F N++VND+LGIIAN H++FAD+EPDMA S  C +LAEL SIAVDF
Sbjct: 833  QLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892

Query: 328  PKTGIPAEVPQELFPKEYPDFMEK-DDKNTYISDRILGKLYRSVKGVATLDNNIRL---D 161
            PKTG+PAE+P +L PKEYPDFM+K  DK TYIS+R++GKL+R VK  A   ++I +   D
Sbjct: 893  PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRD 952

Query: 160  NKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
              +  YD +L V GFE Y+DEA  YK  YD+ +  LM +Y   +EAEI+SG I
Sbjct: 953  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  677 bits (1747), Expect = 0.0
 Identities = 344/593 (58%), Positives = 436/593 (73%), Gaps = 15/593 (2%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            T+IY+RIL  L++G VI +KKFEFLA+SSSQLR++S+WMFAS   ++ + IR WMG+F  
Sbjct: 269  TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQ 328

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            IKNVAK A+R+GQS  SS ET  + +++ E I D+++  +G  Y+FSDGIG+IS  FA +
Sbjct: 329  IKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARR 386

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PSAFQIRY GYKGVVA+DP  +S KLSLR SM KY S NN LDVL W+K
Sbjct: 387  VASKCGLQ-YTPSAFQIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSK 444

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PCYLNRQ++ LLSTLGVKD V E  Q++A+  +D+ L D  KA E L+ M  GEN NI
Sbjct: 445  YQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNI 504

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L  ML CGY P +EP+L MML+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+
Sbjct: 505  LKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQ 564

Query: 835  VFIQIT-----------HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVK 689
            VF+Q T           HP    +  +  +     ++G VVVAKNPCLHPGDIR+L AV 
Sbjct: 565  VFVQFTGAGHREFSEDLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVD 620

Query: 688  SPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPK 509
             P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  +IPP+  Q M+Y   P  
Sbjct: 621  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 680

Query: 508  QLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDF 329
            QLDH VT++E++E+F N++VND+LGIIAN H++FAD+EPDMA S  C +LAEL SIAVDF
Sbjct: 681  QLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 740

Query: 328  PKTGIPAEVPQELFPKEYPDFMEK-DDKNTYISDRILGKLYRSVKGVATLDNNIRL---D 161
            PKTG+PAE+P +L PKEYPDFM+K  DK TYIS+R++GKL+R VK  A   ++I +   D
Sbjct: 741  PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRD 800

Query: 160  NKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
              +  YD +L V GFE Y+DEA  YK  YD+ +  LM +Y   +EAEI+SG I
Sbjct: 801  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 853


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  677 bits (1746), Expect = 0.0
 Identities = 344/593 (58%), Positives = 437/593 (73%), Gaps = 15/593 (2%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            T+IY+RIL  L++G VI +KK EFLA+SSSQLR++S+WMFAS   ++A+ IR WMG+F  
Sbjct: 269  TNIYERILSTLRKGFVIGDKKIEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQ 328

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            IKNVAK A+R+GQS  SS ET  + +++ E I D+++  +G  Y+FSDGIG+IS  FA +
Sbjct: 329  IKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARR 386

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PSAFQIRY GYKGVVA+DP  +S KLSLR SM KY S NN LDVL W+K
Sbjct: 387  VASKCGLQ-YTPSAFQIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLEWSK 444

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PCYLNRQ+I LLSTLGVKD V E  Q++A+  +D+ L D  KA E L+ M  GEN NI
Sbjct: 445  YQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNI 504

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L  ML CGY P +EP+L MML+ FRASKLL+L+ ++RIF+ NGRA+MGCLDE+RTL+YG+
Sbjct: 505  LKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQ 564

Query: 835  VFIQIT-----------HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVK 689
            VF+Q T           HP    +  +  +     ++G VVVAKNPCLHPGDIR+L AV 
Sbjct: 565  VFVQFTGAGHREFSEDLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVD 620

Query: 688  SPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPK 509
             P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  +IPP+  QPM+Y   P  
Sbjct: 621  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSI 680

Query: 508  QLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDF 329
            QLDH+VT++E++E+F N++VND+LGII+N H++FAD+EPDMA S  C +LAEL SIAVDF
Sbjct: 681  QLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDF 740

Query: 328  PKTGIPAEVPQELFPKEYPDFMEK-DDKNTYISDRILGKLYRSVKGVATLDNNIRL---D 161
            PKTG+PAE+P +L PKEYPDFM+K  DK TYIS+R++GKL+R VK  A   ++  +   D
Sbjct: 741  PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRD 800

Query: 160  NKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
              +  YD +L V GFE Y+DEA  YK  YDS +  LM +Y   +EAEI+SG I
Sbjct: 801  VARRSYDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGI 853


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  676 bits (1745), Expect = 0.0
 Identities = 345/593 (58%), Positives = 435/593 (73%), Gaps = 15/593 (2%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            T+IY RIL  LQ+G VI +KKFEFLA+SSSQLR++S+WMFAS   ++A  IR WMG+F  
Sbjct: 421  TNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            IKNVAK A+R+GQS  SS ET  + +++ E I D+++  +G  Y+FSDGIG+IS  FA +
Sbjct: 481  IKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISADFARR 538

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PSAFQIRY GYKGVVA+DP  +S KLSLR SM KY S NN LDVL W+K
Sbjct: 539  VASKCGLQ-YTPSAFQIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLEWSK 596

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PC+LNRQ++ LLSTLGVKD V E  Q++A+  +D+ L D  KA E L+ M  GEN NI
Sbjct: 597  YQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNI 656

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L  ML CGY P +EP+L MML+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+
Sbjct: 657  LKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQ 716

Query: 835  VFIQIT-----------HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVK 689
            VF+Q T           HP    +  +  +     ++G VVVAKNPCLHPGDIR+L AV 
Sbjct: 717  VFVQFTGSGHREFSEDLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVD 772

Query: 688  SPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPK 509
             P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  +IPP+  Q M+Y   P  
Sbjct: 773  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832

Query: 508  QLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDF 329
            QLDH+VT++E++E+F N++VND+LGIIAN H++FAD+EPDMA S  C +LAEL SIAVDF
Sbjct: 833  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892

Query: 328  PKTGIPAEVPQELFPKEYPDFMEK-DDKNTYISDRILGKLYRSVKGVATLDNNIRL---D 161
            PKTG+PAE+P +L PKEYPDFM+K  DK TYIS+R++GKLYR VK  A   ++  +   D
Sbjct: 893  PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 952

Query: 160  NKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
              +  YD +L V GFE Y+DEA  YK  YD+ +  LM +Y   +EAEI+SG I
Sbjct: 953  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  676 bits (1744), Expect = 0.0
 Identities = 344/593 (58%), Positives = 436/593 (73%), Gaps = 15/593 (2%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            T+IY+RIL  L++G VI +KKFEFLA+SSSQLR++S+WMFAS   ++A  IR WMG+F  
Sbjct: 421  TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            IKNVAK A+R+GQS  SSTET  + +++ E I D+++  +G  Y+FSDGIG+IS  FA +
Sbjct: 481  IKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARR 538

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PSAFQIRY GYKGVVA+DP  +S KLSLR SM KY S NN LDVL W+K
Sbjct: 539  VASKCGLQ-HTPSAFQIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSK 596

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PCYLNRQ++ LLSTLGVKD V E  Q++A+  +D+ L D  KA E L+ M  GEN NI
Sbjct: 597  YQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNI 656

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L  ML CGY P +EP+L MML+ FRASKLL+L+ ++RIF+ NGR +MGCLDE+RTL+YG+
Sbjct: 657  LKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQ 716

Query: 835  VFIQIT-----------HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVK 689
            VF+Q T           HP    +  +  +     ++G VVVAKNPCLHPGDIR+L AV 
Sbjct: 717  VFVQFTGSGHREFSEDLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVD 772

Query: 688  SPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPK 509
             P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  +IPP+  Q M+Y   P  
Sbjct: 773  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832

Query: 508  QLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDF 329
            QLDH+VT++E++E+F N++VND+LGIIAN H++FAD+EPDMA S  C +LAEL SIAVDF
Sbjct: 833  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDF 892

Query: 328  PKTGIPAEVPQELFPKEYPDFMEK-DDKNTYISDRILGKLYRSVKGVATLDNNIRL---D 161
            PKTG+PAE+P +L PKEYPDFM+K  DK TYIS+R++GKLYR VK  A   ++  +   D
Sbjct: 893  PKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 952

Query: 160  NKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
              +  YD +L V GFE Y+DEA  YK  YD+ +  LM +Y   +EAEI+SG I
Sbjct: 953  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  674 bits (1738), Expect = 0.0
 Identities = 341/592 (57%), Positives = 434/592 (73%), Gaps = 14/592 (2%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            T+IY+RIL  L++G VI +KKFEFLA+SSSQLR++S+WMFAS   ++A+ IR WMG+F  
Sbjct: 421  TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQ 480

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            IKNVAK A+R+GQS  SS ET  + +++ E I D+++  +G  Y+FSDGIG+IS  FA +
Sbjct: 481  IKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISGDFAHR 538

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PSAFQIRY GYKGVV +DP  +S KLSLR SM KY S N  LDVL W+K
Sbjct: 539  VASKCGLQ-YTPSAFQIRYGGYKGVVGVDPD-SSMKLSLRKSMSKYESDNIKLDVLGWSK 596

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+PCYLNRQ+I LLSTLGVKD V E  Q++A+  +D+ L D  KA E L+ M  GEN NI
Sbjct: 597  YQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNI 656

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L  ML CGY P +EP+L MML+ FRASKLL+L+ R+RIF+ NGR +MGCLDE+RTL+YG+
Sbjct: 657  LKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQ 716

Query: 835  VFIQIT-----------HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVK 689
            VF+Q T           HP    +  +  +     ++G VVVAKNPCLHPGDIR+L AV 
Sbjct: 717  VFVQFTGAGHGEFSDDLHPFNNSRSTNSNF----ILKGNVVVAKNPCLHPGDIRVLKAVN 772

Query: 688  SPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPK 509
               L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  +IPP+  QPM+Y   P  
Sbjct: 773  VRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSI 832

Query: 508  QLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDF 329
            QLDH+VT++E++E+F N++VND+LGIIAN H++FAD+EPDMA S  C +LAEL SIAVDF
Sbjct: 833  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892

Query: 328  PKTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLDNNIRL---DN 158
            PKTG+PAE+P +L PKEYPDFM+K DK +YIS+R++GKL+R VK  A   ++I     D 
Sbjct: 893  PKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDV 952

Query: 157  KKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
             +  YD ++ V GFE Y+DEA  YK  YD+ +  LM +Y   +EAEI+SG I
Sbjct: 953  ARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1004


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  673 bits (1737), Expect = 0.0
 Identities = 340/588 (57%), Positives = 427/588 (72%), Gaps = 10/588 (1%)
 Frame = -2

Query: 1735 TDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWA 1556
            T +Y+RIL +LQ GIVI +KKF+FLA+SSSQLR++S WMFAS   ++A  IR WMG+F  
Sbjct: 421  TGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQ 480

Query: 1555 IKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQ 1376
            I+NVAK A+R+GQS SSS ET  + K++ E I DIE+ +    Y+FSDGIG+IS   A +
Sbjct: 481  IRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHR 540

Query: 1375 VAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAK 1196
            VA KCG     PSAFQIRY GYKGVVA+DPT +S KLSLR SM KY S N +LDVL+W+K
Sbjct: 541  VAIKCGCKSSTPSAFQIRYGGYKGVVAVDPT-SSRKLSLRKSMFKYESDNTNLDVLAWSK 599

Query: 1195 YRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNI 1016
            Y+P +LNRQ+I LLSTLGVKD VFE  Q  A+  +D+ L+D   A E L+ M  GEN N+
Sbjct: 600  YQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNV 659

Query: 1015 LVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGE 836
            L +MLMCGY P +EP+L MML+ FRA+KLLEL+ + RIFV NGR++MGCLDETRTL+YGE
Sbjct: 660  LKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGE 719

Query: 835  VFIQITHPSEKKKCYDD-------KYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKL 677
            VF+QI+    ++   D         +     +EGK+VVAKNPCLHPGD+R+L AV  P L
Sbjct: 720  VFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTL 779

Query: 676  QHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDH 497
             HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  LIPPQ   PMDY   P K LDH
Sbjct: 780  HHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDH 839

Query: 496  EVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTG 317
            +V ++E++E+F N++VND+LGIIAN H +FAD+E D A    C  LA+L SIAVDFPKTG
Sbjct: 840  DVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTG 899

Query: 316  IPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLDNNIR---LDNKKDI 146
            +PAE+P+ L  KEYPDFMEK DK TY S  ++GKL+R VK +A  + NIR    D  +  
Sbjct: 900  VPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQS 959

Query: 145  YDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
            YD ++ V GFE YV +A  YK  YD  +  LM +Y   +E+EI+SG+I
Sbjct: 960  YDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSI 1007


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  673 bits (1736), Expect = 0.0
 Identities = 339/591 (57%), Positives = 431/591 (72%), Gaps = 3/591 (0%)
 Frame = -2

Query: 1765 NTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADS 1586
            +T  ++  + T IY+RIL  L+ GIVI NK+FEFLA+SSSQLRE+S WMFAS   ++A  
Sbjct: 415  STNVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAAD 474

Query: 1585 IRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGI 1406
            IR WMGNF  I+NVAK A+R+GQS SSSTET  + K++   I DIE+ ++G KY+FSDGI
Sbjct: 475  IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGI 534

Query: 1405 GRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCN 1226
            G+IS  FA++VA KC   G  PSAFQIR  G+KGVVAIDPT +S KLSLR SM KY S N
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPT-SSWKLSLRKSMEKYESEN 593

Query: 1225 NSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQ 1046
              LDVL+W+KY+PC+LNRQ+I LLSTLGV D  FE  Q + +  +++ L D  +A E L+
Sbjct: 594  TKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALE 653

Query: 1045 SMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCL 866
             M  GEN NIL +ML+CGY P +EP+L MMLE FRASKLLEL+ +ARIFV  GR++MGCL
Sbjct: 654  LMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCL 713

Query: 865  DETRTLKYGEVFIQITHPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKS 686
            DETRTL YG+VF+Q +    +++           V+GKV+VAKNPCLHPGD+R+L AV  
Sbjct: 714  DETRTLNYGQVFVQFSGSRSERR---------FIVQGKVIVAKNPCLHPGDVRVLRAVNV 764

Query: 685  PKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQ 506
            P L HMVDC+VFPQ+G RPHPNECSGSDLDGD+YFV WD  LIP +   PMDY      +
Sbjct: 765  PDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTK 824

Query: 505  LDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFP 326
            LDHEVT++EI+E+F N++VND+LGII+N H  FAD+EPD A S  CL LA+L SIAVDFP
Sbjct: 825  LDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFP 884

Query: 325  KTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLDNNIRL---DNK 155
            KTG+PAE+PQEL  KEYPDFMEK DK +Y S  ++GKL+R VK +A  + +I+    +  
Sbjct: 885  KTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKM 944

Query: 154  KDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
            +  YD ++ V GFE Y+D+A  +K  YD  +  LM +Y   +EAEI+ G I
Sbjct: 945  QRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGI 995


>gb|EMJ26460.1| hypothetical protein PRUPE_ppa001524mg [Prunus persica]
          Length = 808

 Score =  672 bits (1734), Expect = 0.0
 Identities = 343/597 (57%), Positives = 443/597 (74%), Gaps = 3/597 (0%)
 Frame = -2

Query: 1783 SSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTG 1604
            +SDLS  T N + +  TDIY+RIL +L+ GIVI  KKFEFLA+SSSQLRE+S+WMFAS  
Sbjct: 104  ASDLSPRTSNANGENKTDIYKRILSILRNGIVIGEKKFEFLAFSSSQLRENSMWMFASRW 163

Query: 1603 IVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKY 1424
             ++A  IR+WMGNF  I+NVAK A+R+GQS  SSTET ++ +++ E I D+    N  KY
Sbjct: 164  GLTAADIREWMGNFCHIRNVAKYAARLGQSFGSSTETLNVGEHEIEVIPDVVSRDN--KY 221

Query: 1423 IFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMR 1244
            +FSDGIG+IS  FA++VA KCGF G  PSAFQIRY GYKGVVA+D T +  KLSLR+SM 
Sbjct: 222  VFSDGIGKISADFAKKVAVKCGFKGCTPSAFQIRYGGYKGVVAVDRT-SYKKLSLRSSMY 280

Query: 1243 KYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNK 1064
            KY S +  LDVL+ +K++PC+LNRQ+I LLSTLG+++ VF   Q  A+  +D+ L D  K
Sbjct: 281  KYESEHTKLDVLACSKFQPCFLNRQLITLLSTLGIQNHVFLEKQRAAVQQLDAMLTDPLK 340

Query: 1063 AIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGR 884
            A E L  MY+GE+ NIL ++LMCGY P  EP++ MML+ FRASKLLEL+ + RI + +GR
Sbjct: 341  AQEALDMMYAGESTNILKELLMCGYKPDVEPFISMMLQTFRASKLLELRTKTRILIPDGR 400

Query: 883  ALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRI 704
            A+MGCLDETRTL+YGEVF+Q    S K+    +  Q ++ +EGKVVVAKNPCLHPGD+R+
Sbjct: 401  AMMGCLDETRTLEYGEVFVQF---SGKRHIGSESNQQFI-IEGKVVVAKNPCLHPGDVRV 456

Query: 703  LIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYF 524
            L AV  P+L HMVDC+VFPQ+GPRPHPNECSGSDLDGDIYFV WD  LIP +  QPMDY 
Sbjct: 457  LKAVDVPELYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDDELIPSRQIQPMDYT 516

Query: 523  SGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHS 344
              P   LDH VT++E++E+FVN+MVND+LGIIAN H  FAD++P  A S  C+ LA+L S
Sbjct: 517  PAPTIALDHAVTIEEVEEYFVNYMVNDSLGIIANAHTAFADRQPSKAMSKPCIELAKLFS 576

Query: 343  IAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLDNNIRL 164
            IAVDFPKTG+PA +PQ L  KE+PDFMEK DK TY S  ++G+L+R VK V   D +IR 
Sbjct: 577  IAVDFPKTGVPAIIPQHLRVKEFPDFMEKPDKPTYQSCNVIGELFREVKDVEPHDGSIRS 636

Query: 163  DNK---KDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
             ++   +  YD ++ V GFE Y+++A  YK  YDS +  L+ +Y   +EAEI+SG++
Sbjct: 637  FSREVARQSYDRDMEVDGFEDYIEDAFYYKSNYDSILGNLLDYYGIKTEAEILSGSV 693


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  671 bits (1732), Expect = 0.0
 Identities = 345/604 (57%), Positives = 438/604 (72%), Gaps = 11/604 (1%)
 Frame = -2

Query: 1783 SSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTG 1604
            S+D+S  T +R+  + T IY RIL  LQ GIVI +KKFEFLA+SSSQLRE+S WMFAS  
Sbjct: 416  STDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRL 475

Query: 1603 IVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKY 1424
             ++A  IR WMG+F  I+NVA+ A+R+GQS  SSTET  +  ++ E I DIE+ R G +Y
Sbjct: 476  GLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRY 535

Query: 1423 IFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMR 1244
            +FSDGIG+IS  FA +VA KCG  G  PSAFQIRYAGYKGVVA+DPT +S KLSLR SM 
Sbjct: 536  LFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPT-SSKKLSLRRSMF 594

Query: 1243 KYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNK 1064
            KY S N  LDVL+ +KY+PC+LNRQ+I LLSTLGV D  FE  Q +A+  +D+ L D  +
Sbjct: 595  KYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLR 654

Query: 1063 AIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGR 884
            A E L+ M  GEN NIL +ML+CGY P +EP+L MML+ FRASKLLEL+ + RIF+ NGR
Sbjct: 655  AQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 714

Query: 883  ALMGCLDETRTLKYGEVFIQITHPSEKKKCYDD--------KYQGYLTVEGKVVVAKNPC 728
            ++MGCLDETRTL++G+VF++ +  S  +  YD         + Q YL ++G VVVAKNPC
Sbjct: 715  SMMGCLDETRTLEHGQVFVKFSG-SRFRNLYDSSDMFSERGRGQCYL-IKGSVVVAKNPC 772

Query: 727  LHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQ 548
            LHPGD+RIL AV  P L HMVDC+VFPQ+GPRPHPNECSGSDLDGDIYFV WD  LIP Q
Sbjct: 773  LHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQ 832

Query: 547  DYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKC 368
               PMDY   PP QLDH+VT++E++E+F N++VND+LG+IAN H   AD+E   A S  C
Sbjct: 833  QISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPC 892

Query: 367  LRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVA 188
            + LA   SIAVDFPKTG+PAE+P  L  +EYPDFMEK DK +Y S  ++GKL+R VK +A
Sbjct: 893  VELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIA 952

Query: 187  TLDNNIR---LDNKKDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEI 17
               ++IR    D  +  YD ++ V GFE Y+D+A  YK  YD  +  LM++Y   +EAE+
Sbjct: 953  PRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAEL 1012

Query: 16   ISGN 5
            +SG+
Sbjct: 1013 LSGS 1016


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  671 bits (1731), Expect = 0.0
 Identities = 340/603 (56%), Positives = 436/603 (72%), Gaps = 9/603 (1%)
 Frame = -2

Query: 1783 SSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTG 1604
            S+DLS    + +    T IY RIL  L+ GI+I ++KFEFLA+SSSQLRESS WMFAS  
Sbjct: 420  STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 479

Query: 1603 IVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKY 1424
             ++A  IR+WMGNF  I+NVAK A+R+GQS SSS ET  +  ++ E I D+++E    KY
Sbjct: 480  GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 539

Query: 1423 IFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMR 1244
            +FSDGIG++S  FA +VA KCG     PSAFQIRY GYKGVVA DPT +S KLSLR+SMR
Sbjct: 540  VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 598

Query: 1243 KYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNK 1064
            KY S    LDVL+W+KY+PC+LNRQ+I LLSTLG+ D +FE  Q +A+  +D+ L D  K
Sbjct: 599  KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 658

Query: 1063 AIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGR 884
            A E L+ M  GEN NIL ++L+CGY P +EP+L MML+ FRASKLLEL+ + RIF+ NGR
Sbjct: 659  AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 718

Query: 883  ALMGCLDETRTLKYGEVFIQITHPS------EKKKCYDDKYQGYLTVEGKVVVAKNPCLH 722
            ++MGCLDETRTL YG+VF+QI+         E       + +    V+G VVVAKNPCLH
Sbjct: 719  SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 778

Query: 721  PGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDY 542
            PGD+R+L AV  P L HMVDC+VFPQ+G RPHPNECSGSDLDGDIYFV WD  LIPPQ  
Sbjct: 779  PGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD 838

Query: 541  QPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLR 362
             PMDY      QLDH+V +++++E+F N++VND+LGIIAN H +FAD+EP  A+S  CL+
Sbjct: 839  PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQ 898

Query: 361  LAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATL 182
            LAE  SIAVDFPKTG+PAE+P  L+ KEYPDFMEK DK TY S  ++GKL+R+VK +A  
Sbjct: 899  LAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH 958

Query: 181  DNNIRLDNK---KDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIIS 11
             + IRL  K   +  YD ++ V GFE ++D+A+ +K  YD  +  LM +Y   +EAEI++
Sbjct: 959  TSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILT 1018

Query: 10   GNI 2
            G+I
Sbjct: 1019 GSI 1021


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  670 bits (1728), Expect = 0.0
 Identities = 347/603 (57%), Positives = 445/603 (73%), Gaps = 9/603 (1%)
 Frame = -2

Query: 1783 SSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTG 1604
            S+DLS    +RS  K T+IY RIL +L+ GIV+ +KKFEFLA+SSSQLRE+SLWMFA T 
Sbjct: 419  STDLS----SRSQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTE 474

Query: 1603 I-VSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIE-LERNGK 1430
               +A  IRKWMGNF  I+NVAK A+R+GQS  SSTET  + +++ E I D++ L  +G 
Sbjct: 475  TGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGN 534

Query: 1429 KYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNS 1250
            +Y+FSDGIG+IS+ FA++VAKKCG+D   PSAFQIRY GYKGVVA+DP  + +KLSLR S
Sbjct: 535  EYVFSDGIGKISLEFAQKVAKKCGYDCT-PSAFQIRYGGYKGVVAVDPK-SCYKLSLRKS 592

Query: 1249 MRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDR 1070
            MRKY S N  LDVL+ +K++PCYLNRQ+I LLSTLG+KD VFE  Q + +  +++ L D 
Sbjct: 593  MRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDS 652

Query: 1069 NKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSN 890
             KA EVL  M +GE  N+L +ML+CGY P  EP+L MML+ FRASKLLEL+ ++RIF+  
Sbjct: 653  LKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPK 712

Query: 889  GRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD----DKYQGYLTVEGKVVVAKNPCLH 722
            GRA+MGCLDETRTL+YG+VF+Q ++   +    D    D  + Y+ V+GKVVVAKNPCLH
Sbjct: 713  GRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYM-VKGKVVVAKNPCLH 771

Query: 721  PGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDY 542
            PGD+R+L AV  P L HMVDC+VFPQ+GPRPHPNECSGSDLDGDIYFV WDH LIP +  
Sbjct: 772  PGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPI 831

Query: 541  QPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLR 362
             PMDY +    +LDH+V ++E++E+F N++VND+LGIIAN H +FAD+E   A S +C++
Sbjct: 832  DPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVK 891

Query: 361  LAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATL 182
            LA L S AVDFPKTG+PA +P EL  KEYPDFMEK DK TY S  ++GKL+R VK ++T 
Sbjct: 892  LARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTS 951

Query: 181  DNNIRLDNK---KDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIIS 11
              +I    K   +D YD E+ V GF  YVD+A  +K  YD  +  LM +Y   +EAEI+ 
Sbjct: 952  AGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILG 1011

Query: 10   GNI 2
            GNI
Sbjct: 1012 GNI 1014


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  669 bits (1727), Expect = 0.0
 Identities = 339/591 (57%), Positives = 430/591 (72%), Gaps = 3/591 (0%)
 Frame = -2

Query: 1765 NTGNRSTKKCTDIYQRILDVLQEGIVIANKKFEFLAYSSSQLRESSLWMFASTGIVSADS 1586
            +T  ++  + T IY+RIL  L+ GIVI NK+FEFLA+SSSQLRE+S WMFAS   ++A  
Sbjct: 415  STNVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAAD 474

Query: 1585 IRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGI 1406
            IR WMGNF  I+NVAK A+R+GQS SSSTET  + K++   I DIE+ ++G KY+F DGI
Sbjct: 475  IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGI 534

Query: 1405 GRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCN 1226
            G+IS  FA++VA KC   G  PSAFQIR  G+KGVVAIDPT +S KLSLR SM KY S N
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPT-SSWKLSLRKSMEKYESEN 593

Query: 1225 NSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQ 1046
              LDVL+W+KY+PC+LNRQ+I LLSTLGV D  FE  Q + +  +++ L D  +A E L+
Sbjct: 594  TKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALE 653

Query: 1045 SMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCL 866
             M  GEN NIL +ML+CGY P +EP+L MMLE FRASKLLEL+ +ARIFV  GR++MGCL
Sbjct: 654  LMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCL 713

Query: 865  DETRTLKYGEVFIQITHPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKS 686
            DETRTL YG+VF+Q +    +++           V+GKV+VAKNPCLHPGD+R+L AV  
Sbjct: 714  DETRTLNYGQVFVQFSGSRSERR---------FIVQGKVIVAKNPCLHPGDVRVLRAVNV 764

Query: 685  PKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQ 506
            P L HMVDC+VFPQ+G RPHPNECSGSDLDGD+YFV WD  LIP +   PMDY      +
Sbjct: 765  PDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTK 824

Query: 505  LDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFP 326
            LDHEVT++EI+E+F N++VND+LGII+N H  FAD+EP  A S  CL LA+L SIAVDFP
Sbjct: 825  LDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFP 884

Query: 325  KTGIPAEVPQELFPKEYPDFMEKDDKNTYISDRILGKLYRSVKGVATLDNNIRL---DNK 155
            KTG+PAE+PQEL  KE+PDFMEK DK +Y S  ++GKL+R VK +A  + +I+L   +  
Sbjct: 885  KTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKM 944

Query: 154  KDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNI 2
            K  YD ++ V GF  Y+D+A  YK  YD  +  LM +Y   +EAEI+SG I
Sbjct: 945  KRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGI 995