BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00012508
         (461 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004489626.1| PREDICTED: DNA-directed RNA polymerase II su...    97   3e-18
ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 ...    97   3e-18
ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 ...    97   3e-18
ref|XP_006654370.1| PREDICTED: DNA-directed RNA polymerase II su...    96   4e-18
ref|XP_004303144.1| PREDICTED: DNA-directed RNA polymerase II su...    96   4e-18
ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group] g...    96   4e-18
gb|EPS65957.1| hypothetical protein M569_08819 [Genlisea aurea]        96   5e-18
ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II su...    96   5e-18
ref|XP_006424920.1| hypothetical protein CICLE_v10029380mg [Citr...    96   6e-18
gb|EOY33922.1| DNA-directed RNA polymerase II subunit RPB7 isofo...    96   6e-18
gb|EOY33918.1| DNA-directed RNA polymerase II isoform 3 [Theobro...    96   6e-18
gb|EOY33917.1| DNA-directed RNA polymerase II subunit RPB7 isofo...    96   6e-18
gb|EOY33916.1| DNA-directed RNA polymerase II isoform 1 [Theobro...    96   6e-18
gb|EMJ13349.1| hypothetical protein PRUPE_ppa012276mg [Prunus pe...    96   6e-18
gb|AFK39298.1| unknown [Lotus japonicus]                               96   6e-18
ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypep...    96   6e-18
ref|XP_002298912.1| DNA-directed RNA polymerase II 19 kDa polype...    96   6e-18
ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II su...    96   6e-18
ref|XP_004240381.1| PREDICTED: DNA-directed RNA polymerase II su...    95   1e-17
ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II su...    95   1e-17

>ref|XP_004489626.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cicer
           arietinum]
          Length = 176

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 44/55 (80%), Positives = 51/55 (92%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPGIV 296
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP  V
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
           gi|356512183|ref|XP_003524800.1| PREDICTED: DNA-directed
           RNA polymerase II subunit RPB7-like isoform X1 [Glycine
           max] gi|502141876|ref|XP_004504682.1| PREDICTED:
           DNA-directed RNA polymerase II subunit RPB7-like [Cicer
           arietinum] gi|571455285|ref|XP_006580040.1| PREDICTED:
           DNA-directed RNA polymerase II subunit RPB7-like isoform
           X2 [Glycine max] gi|1173137|sp|P46279.1|RPB7_SOYBN
           RecName: Full=DNA-directed RNA polymerase II subunit
           RPB7; Short=RNA polymerase II subunit B7
           gi|170052|gb|AAA34005.1| RNA polymerase II [Glycine max]
           gi|255626843|gb|ACU13766.1| unknown [Glycine max]
           gi|558695762|gb|AHA84235.1| DNA-directed RNA polymerase
           II subunit RPB7 [Phaseolus vulgaris]
           gi|561032343|gb|ESW30922.1| hypothetical protein
           PHAVU_002G193600g [Phaseolus vulgaris]
           gi|561032344|gb|ESW30923.1| hypothetical protein
           PHAVU_002G193600g [Phaseolus vulgaris]
           gi|561032345|gb|ESW30924.1| hypothetical protein
           PHAVU_002G193600g [Phaseolus vulgaris]
          Length = 176

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 44/55 (80%), Positives = 51/55 (92%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPGIV 296
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP  V
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
           gi|217071674|gb|ACJ84197.1| unknown [Medicago
           truncatula] gi|355509557|gb|AES90699.1| DNA-directed RNA
           polymerase II subunit RPB7 [Medicago truncatula]
           gi|388514911|gb|AFK45517.1| unknown [Medicago
           truncatula]
          Length = 176

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 44/55 (80%), Positives = 51/55 (92%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPGIV 296
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP  V
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>ref|XP_006654370.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Oryza
           brachyantha]
          Length = 177

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 43/53 (81%), Positives = 51/53 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPG 302
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVI+DPG
Sbjct: 122 GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPG 174


>ref|XP_004303144.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Fragaria vesca subsp. vesca]
          Length = 176

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 44/55 (80%), Positives = 51/55 (92%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPGIV 296
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP  V
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPASV 176


>ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
           gi|50878367|gb|AAT85142.1| putative RNA polymerase II
           subunit 5 [Oryza sativa Japonica Group]
           gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa
           Japonica Group] gi|125552268|gb|EAY97977.1| hypothetical
           protein OsI_19896 [Oryza sativa Indica Group]
           gi|215704281|dbj|BAG93121.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218196761|gb|EEC79188.1| hypothetical protein
           OsI_19893 [Oryza sativa Indica Group]
           gi|222631528|gb|EEE63660.1| hypothetical protein
           OsJ_18478 [Oryza sativa Japonica Group]
          Length = 177

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 43/53 (81%), Positives = 51/53 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPG 302
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVI+DPG
Sbjct: 122 GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPG 174


>gb|EPS65957.1| hypothetical protein M569_08819 [Genlisea aurea]
          Length = 177

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/53 (81%), Positives = 51/53 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPG 302
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVI+DPG
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPG 174


>ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449518487|ref|XP_004166273.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 176

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 122 GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173


>ref|XP_006424920.1| hypothetical protein CICLE_v10029380mg [Citrus clementina]
           gi|568870408|ref|XP_006488396.1| PREDICTED: DNA-directed
           RNA polymerase II subunit RPB7-like [Citrus sinensis]
           gi|557526854|gb|ESR38160.1| hypothetical protein
           CICLE_v10029380mg [Citrus clementina]
          Length = 176

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173


>gb|EOY33922.1| DNA-directed RNA polymerase II subunit RPB7 isoform 7 [Theobroma
           cacao]
          Length = 152

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 98  GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 149


>gb|EOY33918.1| DNA-directed RNA polymerase II isoform 3 [Theobroma cacao]
          Length = 173

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 119 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 170


>gb|EOY33917.1| DNA-directed RNA polymerase II subunit RPB7 isoform 2, partial
           [Theobroma cacao]
          Length = 142

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 88  GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 139


>gb|EOY33916.1| DNA-directed RNA polymerase II isoform 1 [Theobroma cacao]
          Length = 176

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173


>gb|EMJ13349.1| hypothetical protein PRUPE_ppa012276mg [Prunus persica]
          Length = 176

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173


>gb|AFK39298.1| unknown [Lotus japonicus]
          Length = 176

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173


>ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223540340|gb|EEF41911.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173


>ref|XP_002298912.1| DNA-directed RNA polymerase II 19 kDa polypeptide family protein
           [Populus trichocarpa] gi|222846170|gb|EEE83717.1|
           DNA-directed RNA polymerase II 19 kDa polypeptide family
           protein [Populus trichocarpa]
          Length = 176

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173


>ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
           vinifera] gi|147841138|emb|CAN75204.1| hypothetical
           protein VITISV_042914 [Vitis vinifera]
           gi|297745997|emb|CBI16053.3| unnamed protein product
           [Vitis vinifera]
          Length = 176

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDP 305
           GD P+YTTSDGS++I +D+EVRLKI+GTRVDATEIFCIGTIKDD+LGVINDP
Sbjct: 122 GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173


>ref|XP_004240381.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Solanum lycopersicum] gi|565385656|ref|XP_006358706.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Solanum tuberosum]
          Length = 177

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 42/53 (79%), Positives = 51/53 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPG 302
           GD P+YTTSDGS++I +++EVRLKI+GTRVDATEIFCIGTIKDD+LGVI+DPG
Sbjct: 122 GDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPG 174


>ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Brachypodium distachyon]
          Length = 177

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 42/53 (79%), Positives = 51/53 (96%)
 Frame = -2

Query: 460 GDAPSYTTSDGSMRITRDAEVRLKIVGTRVDATEIFCIGTIKDDYLGVINDPG 302
           GD P+YTTSDGS++I +++EVRLKI+GTRVDATEIFCIGTIKDD+LGVI+DPG
Sbjct: 122 GDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPG 174