BLASTX nr result
ID: Ephedra28_contig00011764
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00011764
(366 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [A... 137 1e-30
ref|XP_006842073.1| hypothetical protein AMTR_s00078p00056260 [A... 135 6e-30
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme... 130 1e-28
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 130 2e-28
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 130 2e-28
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 130 2e-28
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 129 3e-28
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 129 4e-28
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 129 5e-28
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 129 5e-28
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 129 5e-28
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 129 5e-28
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 128 9e-28
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 128 9e-28
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 128 9e-28
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 128 9e-28
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S... 128 9e-28
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ... 127 2e-27
gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops... 126 3e-27
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha... 126 3e-27
>ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda]
gi|548844121|gb|ERN03747.1| hypothetical protein
AMTR_s00078p00055040 [Amborella trichopoda]
Length = 1207
Score = 137 bits (345), Expect = 1e-30
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 1/122 (0%)
Frame = -3
Query: 364 GALSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAW 185
G LS+ A + K+ + A +TA+F RV+ I F GF LCGRRY FLAFS NQLRD SAW
Sbjct: 472 GVLSIYTAPIVKDFSHSKTAQKTAIFRRVRSIAFDGFNLCGRRYLFLAFSSNQLRDRSAW 531
Query: 184 FFADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKR 8
FFAD + TA++IRSWMGKF NVAK AARMG CFSSTY+TV+ +K + ++ +IKR
Sbjct: 532 FFADTEKTTADSIRSWMGKFTD-ENVAKCAARMGMCFSSTYATVEFDQKDVNFKLAEIKR 590
Query: 7 NG 2
NG
Sbjct: 591 NG 592
>ref|XP_006842073.1| hypothetical protein AMTR_s00078p00056260 [Amborella trichopoda]
gi|548844122|gb|ERN03748.1| hypothetical protein
AMTR_s00078p00056260 [Amborella trichopoda]
Length = 1207
Score = 135 bits (340), Expect = 6e-30
Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 1/122 (0%)
Frame = -3
Query: 364 GALSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAW 185
G LS+ A + K+ + + +T +F RV+ I F GF LCGRRYSFLAFS NQLRD SAW
Sbjct: 472 GVLSIYTAPIVKDFSHIKPSQKTTIFRRVRSIAFDGFNLCGRRYSFLAFSSNQLRDRSAW 531
Query: 184 FFADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKR 8
FFAD + TA++IRSWMGKF NVAK AARMG CFSSTY+TV+V +K + ++ +I+R
Sbjct: 532 FFADTEKTTADSIRSWMGKFTD-KNVAKCAARMGMCFSSTYATVEVDQKDVNFKLAEIER 590
Query: 7 NG 2
NG
Sbjct: 591 NG 592
>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
italica]
Length = 1211
Score = 130 bits (328), Expect = 1e-28
Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ + A + K+ ++ H+T V+ RVK L GF +CGR+YSFLAFS NQLRD SAWFF
Sbjct: 481 LNFSAAQIVKDLMSNSFQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFF 540
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFHE-IEDIKRNG 2
A+ T +IR WMG+F NVAKHAARMGQCFSSTY+TV + + +E +ED++RNG
Sbjct: 541 AEDRTRTVESIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVMQPDEVNECLEDVERNG 599
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 130 bits (326), Expect = 2e-28
Identities = 69/120 (57%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ A++ +E ++ RTA+F RVK IL RGF LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 465 LTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFF 524
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ I I SWMG+F NVAK AARMGQCFSSTY+TV+V + + E+ DI+RNG
Sbjct: 525 AEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNG 583
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 130 bits (326), Expect = 2e-28
Identities = 69/120 (57%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ A++ +E ++ RTA+F RVK IL RGF LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 465 LTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFF 524
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ I I SWMG+F NVAK AARMGQCFSSTY+TV+V + + E+ DI+RNG
Sbjct: 525 AEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNG 583
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 130 bits (326), Expect = 2e-28
Identities = 69/120 (57%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ A++ +E ++ RTA+F RVK IL RGF LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 465 LTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFF 524
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ I I SWMG+F NVAK AARMGQCFSSTY+TV+V + + E+ DI+RNG
Sbjct: 525 AEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNG 583
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 129 bits (325), Expect = 3e-28
Identities = 68/120 (56%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ A++ +E ++ RTA+F RVK IL +GF LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 465 LTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFF 524
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ I I SWMG+F NVAK AARMGQCFSSTY+TV+V ++ + E+ DI+RNG
Sbjct: 525 AEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNG 583
>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 129 bits (324), Expect = 4e-28
Identities = 68/119 (57%), Positives = 83/119 (69%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ VA + KE ++ +T VF R + IL GF LCGR+Y+FLAFS NQLRD SAWFF
Sbjct: 464 LNYYVAPIVKEITSNSFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFF 523
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFHEIEDIKRNG 2
A+ I+ I SWMGKF NVAK AARMGQCFSSTY+TV+V + ++I DIKRNG
Sbjct: 524 AECVNISVGKITSWMGKFNN-KNVAKCAARMGQCFSSTYATVEVTSSEVNDIPDIKRNG 581
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 129 bits (323), Expect = 5e-28
Identities = 68/120 (56%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ A++ +E ++ RTA+F RVK IL +GF LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 465 LTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFF 524
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ I I SWMG+F NVAK AARMGQCFSSTY+TV+V + + E+ DI+RNG
Sbjct: 525 AEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNG 583
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 129 bits (323), Expect = 5e-28
Identities = 68/120 (56%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ A++ +E ++ RTA+F RVK IL +GF LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 465 LTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFF 524
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ I I SWMG+F NVAK AARMGQCFSSTY+TV+V + + E+ DI+RNG
Sbjct: 525 AEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNG 583
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 129 bits (323), Expect = 5e-28
Identities = 69/119 (57%), Positives = 82/119 (68%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ VA + K ++ +T VF RVK IL GF LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 305 LNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFF 364
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFHEIEDIKRNG 2
A+ + I+SWMGKF NVAK AARMGQCFSSTY+TV+V + E+ DIKRNG
Sbjct: 365 AEDKKTSVRAIKSWMGKFTN-RNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNG 422
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 129 bits (323), Expect = 5e-28
Identities = 69/119 (57%), Positives = 82/119 (68%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ VA + K ++ +T VF RVK IL GF LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 467 LNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFF 526
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFHEIEDIKRNG 2
A+ + I+SWMGKF NVAK AARMGQCFSSTY+TV+V + E+ DIKRNG
Sbjct: 527 AEDKKTSVRAIKSWMGKFTN-RNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNG 584
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
tuberosum]
Length = 1198
Score = 128 bits (321), Expect = 9e-28
Identities = 69/120 (57%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ A++ +E + RT +F RVK IL +GF LCGRRYSFLAFS NQLRD SAWFF
Sbjct: 466 LTYYAATIVREITSSSNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFF 525
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ I NI +WMGKF NVAK AARMGQCFSSTY+TV+V + + E+ DI+RNG
Sbjct: 526 AEAPEIRVPNIINWMGKFGN-RNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNG 584
>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
arietinum]
Length = 1201
Score = 128 bits (321), Expect = 9e-28
Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Frame = -3
Query: 361 ALSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWF 182
AL+ VA + KE ++ +T ++ RVK IL GF CGR+YSFLAFS NQLRD SAWF
Sbjct: 464 ALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWF 523
Query: 181 FADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFHE-IEDIKRN 5
FA+ + IT ++IR+WMGKF + NVAK AARMGQCFSSTY++V+V + + + D++RN
Sbjct: 524 FAEDNNITCDDIRNWMGKFNQ-RNVAKCAARMGQCFSSTYASVEVAANEVNSMLADVERN 582
>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
arietinum]
Length = 1247
Score = 128 bits (321), Expect = 9e-28
Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Frame = -3
Query: 361 ALSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWF 182
AL+ VA + KE ++ +T ++ RVK IL GF CGR+YSFLAFS NQLRD SAWF
Sbjct: 510 ALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWF 569
Query: 181 FADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFHE-IEDIKRN 5
FA+ + IT ++IR+WMGKF + NVAK AARMGQCFSSTY++V+V + + + D++RN
Sbjct: 570 FAEDNNITCDDIRNWMGKFNQ-RNVAKCAARMGQCFSSTYASVEVAANEVNSMLADVERN 628
>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca
subsp. vesca]
Length = 1197
Score = 128 bits (321), Expect = 9e-28
Identities = 66/116 (56%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Frame = -3
Query: 346 VASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFFADGD 167
VA + KE + +T V+ R++ IL GF LCGR+YSFLAFS NQLRD SAWFFA+
Sbjct: 469 VAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDK 528
Query: 166 GITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQF-HEIEDIKRNG 2
I+ I++WMG+F NVAK AARMGQCFSSTY+TV+V Q HE+ DI+RNG
Sbjct: 529 TISIQGIKNWMGRFTN-RNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNG 583
>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein
SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 128 bits (321), Expect = 9e-28
Identities = 63/120 (52%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
L+ + A + K+ ++ H+T V+ R+K L GF +CGR+YSFLAFS NQLRD SAWFF
Sbjct: 477 LNFSAAQIVKDLMSNSFLHKTTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFF 536
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFHE-IEDIKRNG 2
A+ T IR WMG+F NVAKHAARMGQCFSSTY+TV + + +E +E+++RNG
Sbjct: 537 AEDRMRTVETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVMQPHEVNECLEEVERNG 595
>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 127 bits (318), Expect = 2e-27
Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
LS VA + K+ + + +T VF RVK IL GF+LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 463 LSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFF 522
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ ++I++WMGKF K NVAK AARMG CFSSTY+TVDV + + E+ DI+RNG
Sbjct: 523 AEDGKTRVSDIKAWMGKF-KDKNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNG 581
>gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 126 bits (317), Expect = 3e-27
Identities = 69/120 (57%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
LS VA + K+ + + +T VF RVK IL GF+LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 463 LSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFF 522
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ ++I++WMGKF K NVAK AARMG CFSSTY+TVDV + E+ DI+RNG
Sbjct: 523 AEDGKTRVSDIKTWMGKF-KDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG 581
>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative
RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
6 [Arabidopsis thaliana]
Length = 1196
Score = 126 bits (317), Expect = 3e-27
Identities = 69/120 (57%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -3
Query: 358 LSVNVASVAKEGFNDFCAHRTAVFSRVKDILFRGFELCGRRYSFLAFSPNQLRDHSAWFF 179
LS VA + K+ + + +T VF RVK IL GF+LCGR+YSFLAFS NQLRD SAWFF
Sbjct: 463 LSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFF 522
Query: 178 ADGDGITANNIRSWMGKFQKITNVAKHAARMGQCFSSTYSTVDVGRKQFH-EIEDIKRNG 2
A+ ++I++WMGKF K NVAK AARMG CFSSTY+TVDV + E+ DI+RNG
Sbjct: 523 AEDGKTRVSDIKTWMGKF-KDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG 581