BLASTX nr result
ID: Ephedra28_contig00011763
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra28_contig00011763 (1361 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 437 e-120 ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 434 e-119 ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 426 e-116 ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 426 e-116 ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis... 426 e-116 emb|CBI21038.3| unnamed protein product [Vitis vinifera] 424 e-116 ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 424 e-116 ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [A... 424 e-116 emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 423 e-116 gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] 422 e-115 ref|XP_006842073.1| hypothetical protein AMTR_s00078p00056260 [A... 422 e-115 ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 421 e-115 ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 421 e-115 dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 421 e-115 ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 421 e-115 ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 421 e-115 gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 421 e-115 gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 420 e-115 gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 418 e-114 ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc... 417 e-114 >gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica] Length = 1196 Score = 437 bits (1123), Expect = e-120 Identities = 228/430 (53%), Positives = 301/430 (70%), Gaps = 4/430 (0%) Frame = -2 Query: 1279 FFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALRHMHSY 1100 FF+I ++ I FE +L+N ++HKG +N H L+D F+ +L P + AL+H+ SY Sbjct: 318 FFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQ--PKEINVAALKHLCSY 375 Query: 1099 GNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 932 + ++D C L+ + L++ + +K P D EVRRL+ITPTKAYC PPE+ELSNRV Sbjct: 376 RSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRV 435 Query: 931 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRVRGILS 752 LR+Y+ V+DRFLRV F+DE M K+ S L+ VA + KE ++ +T VF R R IL+ Sbjct: 436 LRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNVFKRFRTILN 495 Query: 751 RGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKHAARMG 572 GF LCGR+Y+FLAFS+NQLRD SAWFFA I+ I SWMGKF NVAK AARMG Sbjct: 496 DGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGKFNN-KNVAKCAARMG 554 Query: 571 QCFSSTYSTVDVGRRQFREIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQ 392 QCFSSTY+TV+V + +I DI+RNGY FSDGIG I+PDLALEV +L+L+ NPP A+Q Sbjct: 555 QCFSSTYATVEVTSSEVNDIPDIKRNGYVFSDGIGMITPDLALEVAEKLKLDRNPPCAYQ 614 Query: 391 IRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLL 212 IRF G KGVV+ WP G ++L LR SM+KF+ H TLEI SWTR+ P +LNR+IITLL Sbjct: 615 IRFAGCKGVVACWP-SKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGFLNRQIITLL 673 Query: 211 SALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKE 32 S L V+D++F +Q MV +L +ML +VAFD+LT+SC+ N AA+M+ AGF P+ E Sbjct: 674 STLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCA-EQGNAAAIMLSAGFKPQTE 732 Query: 31 PHLKDLLTAI 2 PHL+ +LT I Sbjct: 733 PHLRGMLTCI 742 >ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp. vesca] Length = 1197 Score = 434 bits (1117), Expect = e-119 Identities = 230/436 (52%), Positives = 306/436 (70%), Gaps = 5/436 (1%) Frame = -2 Query: 1294 PRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALR 1115 P F+I QK I F+ +L+N ++HKGILN H L++ F+ +L P + AL+ Sbjct: 314 PMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQ--PEEINVAALK 371 Query: 1114 HMHSYGNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIE 947 H+ SY + ++D L E +L++ + +K P D EVRRL+ITPTKAYC PPE+E Sbjct: 372 HLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVE 431 Query: 946 LSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRV 767 LSNRVLR+Y+ V+DRFLRV F+DE M + S ++ VA + KE + +T V+ R+ Sbjct: 432 LSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVRI 491 Query: 766 RGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKH 587 R IL GF LCGR+YSFLAFS+NQLRD SAWFFA I+ I++WMG+F NVAK Sbjct: 492 RAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTN-RNVAKC 550 Query: 586 AARMGQCFSSTYSTVDVGRRQF-REIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNIN 410 AARMGQCFSSTY+TV+V Q E+ DIERNGY FSDGIG+I+PDLA+EV +L+L+ + Sbjct: 551 AARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRD 610 Query: 409 PPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNR 230 PPSA+QIR+GG KGVV+ WP G ++L LR SM+KF DH TLEI SWTR P +LNR Sbjct: 611 PPSAYQIRYGGCKGVVACWP-STGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNR 669 Query: 229 EIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAG 50 +IITLLSAL V D++F +Q +MVS+L++ML +VAFD+LT+SC+ N+AA+M+ AG Sbjct: 670 QIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCA-EQGNSAAIMLSAG 728 Query: 49 FTPKKEPHLKDLLTAI 2 F P+ EPHL+ +LT I Sbjct: 729 FKPQTEPHLRGMLTCI 744 >ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] Length = 1200 Score = 426 bits (1095), Expect = e-116 Identities = 222/431 (51%), Positives = 301/431 (69%), Gaps = 5/431 (1%) Frame = -2 Query: 1279 FFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALRHMHSY 1100 FF I +++ I FE +L+N ++HKGI N H L++ F+ +L T + S AL+H+ +Y Sbjct: 322 FFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVS--ALKHICTY 379 Query: 1099 GNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 932 +++ L E +L++ K P D +E+RRL+ITPTKAYC PPE+ELSNRV Sbjct: 380 RRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRV 439 Query: 931 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRVRGILS 752 LR+Y+ V+DRFLRV F+DE + ++ S L+ VA + ++ ++ +T +F RVR IL+ Sbjct: 440 LRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILT 499 Query: 751 RGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKHAARMG 572 GF LCGRRYSFLAFSANQLRD SAWFF+ I+ D++SWMGKF N+AK AARMG Sbjct: 500 EGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTN-RNIAKCAARMG 558 Query: 571 QCFSSTYSTVDVGRRQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAF 395 QCFSSTY+T++V + ++ DIERNGY FSDGIG I+PDLA EV +L+L+I+PP A+ Sbjct: 559 QCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAY 618 Query: 394 QIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITL 215 QIR+ G KGVV+ WP G +L LRPSM+KF +H TLEI SWTRF P +LNR+IITL Sbjct: 619 QIRYAGCKGVVACWP-GKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITL 677 Query: 214 LSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKK 35 LS L V D VF +Q +MVS+L +M +VAFD+LT+SC+ N AA+M+ AGF P + Sbjct: 678 LSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCAD-QGNVAAIMLSAGFKPDR 736 Query: 34 EPHLKDLLTAI 2 EPHL+ +LT + Sbjct: 737 EPHLRGMLTCV 747 >ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus] Length = 1197 Score = 426 bits (1094), Expect = e-116 Identities = 220/431 (51%), Positives = 301/431 (69%), Gaps = 5/431 (1%) Frame = -2 Query: 1279 FFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALRHMHSY 1100 FF I +K I FE +L+N ++HKGI+N H ++DRF+ +L P + AL H+H++ Sbjct: 318 FFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ--PNEVNLAALSHIHAF 375 Query: 1099 GNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 932 + D C +L E +L++ LK D +E+RRL+ITP+KAYCFPPE+ELSNRV Sbjct: 376 RRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRV 435 Query: 931 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRVRGILS 752 LRRY+ V+DRFLRV F+DE M K+ S + VA + KE + +T +F+R++ IL Sbjct: 436 LRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILK 495 Query: 751 RGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKHAARMG 572 GF LCGR+YSFLA+S+NQLRD SAWFFA I+ + I WMGKF NVAK AAR+G Sbjct: 496 HGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGKFTN-KNVAKCAARIG 554 Query: 571 QCFSSTYSTVDVGRRQF-REIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAF 395 QCFSSTY+T++V R ++ D+ERNGY FSDGIG I+PDLA EV +L+++ +PP A+ Sbjct: 555 QCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAY 614 Query: 394 QIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITL 215 QIR+ GYKGVV+TWP + +L LRPSM+KF+ +HR LEI SWTRF P +LNR+IITL Sbjct: 615 QIRYAGYKGVVATWPSKKD-GIRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQIITL 673 Query: 214 LSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKK 35 LS L V D++F +Q +M+S+L M+ +VAF++LT+SC+ N AA+M+ AGF P+ Sbjct: 674 LSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCA-EQGNAAAIMLSAGFEPRT 732 Query: 34 EPHLKDLLTAI 2 EPHL+ +L I Sbjct: 733 EPHLRGMLMCI 743 >ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus] gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus] Length = 1197 Score = 426 bits (1094), Expect = e-116 Identities = 220/431 (51%), Positives = 301/431 (69%), Gaps = 5/431 (1%) Frame = -2 Query: 1279 FFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALRHMHSY 1100 FF I +K I FE +L+N ++HKGI+N H ++DRF+ +L P + AL H+H++ Sbjct: 318 FFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ--PNEVNLAALSHIHAF 375 Query: 1099 GNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 932 + D C +L E +L++ LK D +E+RRL+ITP+KAYCFPPE+ELSNRV Sbjct: 376 RRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRV 435 Query: 931 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRVRGILS 752 LRRY+ V+DRFLRV F+DE M K+ S + VA + KE + +T +F+R++ IL Sbjct: 436 LRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILK 495 Query: 751 RGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKHAARMG 572 GF LCGR+YSFLA+S+NQLRD SAWFFA I+ + I WMGKF NVAK AAR+G Sbjct: 496 HGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGKFTN-KNVAKCAARIG 554 Query: 571 QCFSSTYSTVDVGRRQF-REIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAF 395 QCFSSTY+T++V R ++ D+ERNGY FSDGIG I+PDLA EV +L+++ +PP A+ Sbjct: 555 QCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAY 614 Query: 394 QIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITL 215 QIR+ GYKGVV+TWP + +L LRPSM+KF+ +HR LEI SWTRF P +LNR+IITL Sbjct: 615 QIRYAGYKGVVATWPSKKD-GIRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQIITL 673 Query: 214 LSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKK 35 LS L V D++F +Q +M+S+L M+ +VAF++LT+SC+ N AA+M+ AGF P+ Sbjct: 674 LSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCA-EQGNAAAIMLSAGFEPRT 732 Query: 34 EPHLKDLLTAI 2 EPHL+ +L I Sbjct: 733 EPHLRGMLMCI 743 >emb|CBI21038.3| unnamed protein product [Vitis vinifera] Length = 1035 Score = 424 bits (1091), Expect = e-116 Identities = 230/446 (51%), Positives = 307/446 (68%), Gaps = 5/446 (1%) Frame = -2 Query: 1324 LRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAF 1148 LRVR E +P FF I +++ I F +L+N ++HKGI+N H L+D+F+ +L Sbjct: 143 LRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQ 202 Query: 1147 TPLAQSTMALRHMHSYGNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIITP 980 + + AL+H+ SY + ++D L+ + L++ + LK+P D +EVRRL+ITP Sbjct: 203 KDI--NIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITP 260 Query: 979 TKAYCFPPEIELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDF 800 +KAYC PPE+ELSNRVLR Y+ VSDRFLRV F+DE M + + L+ VA + K ++ Sbjct: 261 SKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNS 320 Query: 799 SANRTAVFSRVRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMG 620 +T VF RV+ IL+ GF LCGR+YSFLAFS+NQLRD SAWFFA + I+SWMG Sbjct: 321 FPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMG 380 Query: 619 KFQEITNVAKHAARMGQCFSSTYSTVDVGRRQFREIEDIERNGYTFSDGIGKISPDLALE 440 KF NVAK AARMGQCFSSTY+TV+V + +E+ DI+RNGY FSDGIGKI PDLA+E Sbjct: 381 KFTN-RNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNGYDFSDGIGKIVPDLAME 439 Query: 439 VTRRLQLNINPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISW 260 V +L+L PSA+QIR+ G KGVV+ WP + +L RPSM+KF DH LEI SW Sbjct: 440 VAEKLKLE-GTPSAYQIRYAGCKGVVACWPSD-NDGIRLSWRPSMNKFLSDHTILEICSW 497 Query: 259 TRFLPAYLNREIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLP 80 TRF P +LNR+I+TLLSAL V DK+F +Q SM+S+L +ML +VAFD+L +SC+ Sbjct: 498 TRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCA-EQG 556 Query: 79 NTAAVMIGAGFTPKKEPHLKDLLTAI 2 NTAA+M+ AGF P+ EPHL+ +LT I Sbjct: 557 NTAAIMLSAGFKPQTEPHLQGMLTCI 582 >ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera] Length = 1197 Score = 424 bits (1091), Expect = e-116 Identities = 230/446 (51%), Positives = 307/446 (68%), Gaps = 5/446 (1%) Frame = -2 Query: 1324 LRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAF 1148 LRVR E +P FF I +++ I F +L+N ++HKGI+N H L+D+F+ +L Sbjct: 305 LRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQ 364 Query: 1147 TPLAQSTMALRHMHSYGNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIITP 980 + + AL+H+ SY + ++D L+ + L++ + LK+P D +EVRRL+ITP Sbjct: 365 KDI--NIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITP 422 Query: 979 TKAYCFPPEIELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDF 800 +KAYC PPE+ELSNRVLR Y+ VSDRFLRV F+DE M + + L+ VA + K ++ Sbjct: 423 SKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNS 482 Query: 799 SANRTAVFSRVRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMG 620 +T VF RV+ IL+ GF LCGR+YSFLAFS+NQLRD SAWFFA + I+SWMG Sbjct: 483 FPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMG 542 Query: 619 KFQEITNVAKHAARMGQCFSSTYSTVDVGRRQFREIEDIERNGYTFSDGIGKISPDLALE 440 KF NVAK AARMGQCFSSTY+TV+V + +E+ DI+RNGY FSDGIGKI PDLA+E Sbjct: 543 KFTN-RNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNGYDFSDGIGKIVPDLAME 601 Query: 439 VTRRLQLNINPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISW 260 V +L+L PSA+QIR+ G KGVV+ WP + +L RPSM+KF DH LEI SW Sbjct: 602 VAEKLKLE-GTPSAYQIRYAGCKGVVACWPSD-NDGIRLSWRPSMNKFLSDHTILEICSW 659 Query: 259 TRFLPAYLNREIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLP 80 TRF P +LNR+I+TLLSAL V DK+F +Q SM+S+L +ML +VAFD+L +SC+ Sbjct: 660 TRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCA-EQG 718 Query: 79 NTAAVMIGAGFTPKKEPHLKDLLTAI 2 NTAA+M+ AGF P+ EPHL+ +LT I Sbjct: 719 NTAAIMLSAGFKPQTEPHLQGMLTCI 744 >ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda] gi|548844121|gb|ERN03747.1| hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda] Length = 1207 Score = 424 bits (1089), Expect = e-116 Identities = 225/440 (51%), Positives = 304/440 (69%), Gaps = 5/440 (1%) Frame = -2 Query: 1306 GHVVPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQST 1127 G + P FF++ Q+ + FE YL+ L+HKGI+N H L F+ +L + +T Sbjct: 319 GFMKPMRNHFFSVNIQEGLSFEVVYLVTCLVHKGIINQHRLCKEFFDLLRSQSPEV--NT 376 Query: 1126 MALRHMHSYGNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFP 959 ALRHM+S ++D EL E +L++ R +K I D++EVRRL+ITPT A C P Sbjct: 377 AALRHMYSCHRPVFDAYKELKTVQEWLLKNPRLVKETHIPEDSVEVRRLMITPTGAQCLP 436 Query: 958 PEIELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAV 779 P++ELSNRVLR YR +SDRF+RV F DE + L SG LS+ A + K+ + +A +TA+ Sbjct: 437 PQVELSNRVLRNYREISDRFIRVTFTDEGLQTLNSGVLSIYTAPIVKDFSHSKTAQKTAI 496 Query: 778 FSRVRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITN 599 F RVR I GF LCGRRY FLAFS+NQLRD SAWFFA+ + T + IRSWMGKF + N Sbjct: 497 FRRVRSIAFDGFNLCGRRYLFLAFSSNQLRDRSAWFFADTEKTTADSIRSWMGKFTD-EN 555 Query: 598 VAKHAARMGQCFSSTYSTVDVGRRQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQ 422 VAK AARMG CFSSTY+TV+ ++ ++ +I+RNGY FSDGIGKI+P+LA +V +L+ Sbjct: 556 VAKCAARMGMCFSSTYATVEFDQKDVNFKLAEIKRNGYVFSDGIGKITPELATQVASKLK 615 Query: 421 LNINPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPA 242 L+ NPP A+Q+R+ G KGV+ TWP + KL +RPSM KF+ H LE+I+WTRF P Sbjct: 616 LSENPPCAYQVRYAGCKGVIVTWPRDG--KAKLSIRPSMFKFESKHTMLEVITWTRFQPG 673 Query: 241 YLNREIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVM 62 YLNR+IITLLS L V ++ F +LQ+SMVS L ++L EVA ++T+SC G NTAA+M Sbjct: 674 YLNRQIITLLSTLKVPNEAFLELQDSMVSDLSQILVNGEVAHKVVTNSC-GEQANTAAIM 732 Query: 61 IGAGFTPKKEPHLKDLLTAI 2 + AGFTP+ EPHL+++L+ I Sbjct: 733 LSAGFTPQTEPHLREMLSCI 752 >emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 423 bits (1088), Expect = e-116 Identities = 227/431 (52%), Positives = 297/431 (68%), Gaps = 5/431 (1%) Frame = -2 Query: 1279 FFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALRHMHSY 1100 FF N+ I F+ +L+N ++HKGI+N H + + F+ +L + + AL+HM SY Sbjct: 320 FFCFQNEG-ISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEV--NLAALKHMFSY 376 Query: 1099 GNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 932 + D +L I L++ + L+ D +EVRRL+ITPTKAYC PP +ELSNRV Sbjct: 377 KWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRV 436 Query: 931 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRVRGILS 752 LR Y+ V+DRFLRV F+DE M L L+ A++ +E ++ + RTA+F RV+ ILS Sbjct: 437 LRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILS 496 Query: 751 RGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKHAARMG 572 RGF LCGR+YSFLAFSANQLRD SAWFFA I I SWMG+F NVAK AARMG Sbjct: 497 RGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMG 555 Query: 571 QCFSSTYSTVDVGRRQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAF 395 QCFSSTY+TV+V + E+ DIERNGY FSDGIG IS DLA+EV +L LN+NPPSA+ Sbjct: 556 QCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLNVNPPSAY 615 Query: 394 QIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITL 215 QIR+ GYKGVV+ WP + L LRPSM KFD +H LEI SWTRF P +LNR+I+TL Sbjct: 616 QIRYAGYKGVVACWPTK-NDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTL 674 Query: 214 LSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKK 35 LS+L VKD +F ++Q M+S L +ML +VAFD++T+SC+ NTAA+M+ AGF P+ Sbjct: 675 LSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GNTAALMLSAGFKPQS 733 Query: 34 EPHLKDLLTAI 2 EPHL+ +L++I Sbjct: 734 EPHLRGMLSSI 744 >gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] Length = 1197 Score = 422 bits (1086), Expect = e-115 Identities = 223/431 (51%), Positives = 300/431 (69%), Gaps = 5/431 (1%) Frame = -2 Query: 1279 FFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALRHMHSY 1100 F+ I ++ I FE +L+N ++HKGI N H L++ F+ +L P + AL+H++SY Sbjct: 319 FYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQ--PREVNVAALKHIYSY 376 Query: 1099 GNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 932 ++D L+ + L++ K+P D +E+RRL+ITPTKA+C PE+ELSNRV Sbjct: 377 RRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCLLPEVELSNRV 436 Query: 931 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRVRGILS 752 LR+Y+ V+DRFLRV F+DE M + + L+ AS+ ++ + F + +T VF RVR IL+ Sbjct: 437 LRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTGVFKRVRSILT 496 Query: 751 RGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKHAARMG 572 GF LCGR+YSFLAFSANQLRD SAWFFA + I WMGKF N+AK AARMG Sbjct: 497 DGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTN-RNIAKCAARMG 555 Query: 571 QCFSSTYSTVDVGRRQFRE-IEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAF 395 QCFSSTY+TV+V + + DIERNGY FSDGIGKI+PDLA EV ++L+L++NPP A+ Sbjct: 556 QCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLKLDLNPPCAY 615 Query: 394 QIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITL 215 QIR+ G KGVV+ WP E G +L LR SM+KF DH TLEI SWTRF P +LNR+IITL Sbjct: 616 QIRYAGCKGVVACWP-EEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGFLNRQIITL 674 Query: 214 LSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKK 35 LS V D+VF ++QN+MVS+L ++L +VAF++LTSSCS N AA+M+ AGF P+ Sbjct: 675 LSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCS-EQGNAAAIMLSAGFKPQT 733 Query: 34 EPHLKDLLTAI 2 EPHL+ +LT + Sbjct: 734 EPHLRGILTCV 744 >ref|XP_006842073.1| hypothetical protein AMTR_s00078p00056260 [Amborella trichopoda] gi|548844122|gb|ERN03748.1| hypothetical protein AMTR_s00078p00056260 [Amborella trichopoda] Length = 1207 Score = 422 bits (1084), Expect = e-115 Identities = 223/431 (51%), Positives = 301/431 (69%), Gaps = 5/431 (1%) Frame = -2 Query: 1279 FFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALRHMHSY 1100 FF++ Q+ + FE YL+ L+HKGI+N H L F+ +L + + +T ALRHM+S Sbjct: 328 FFSVNIQQGLCFEIVYLVTCLVHKGIINQHRLCKEFFDLLRSQSSEV--NTAALRHMYSC 385 Query: 1099 GNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 932 ++D +LE + L++ R LK I +++EVRRL+ITPT A C PP++ELSNRV Sbjct: 386 RRPVFDAYRKLETVHEWLLKNPRLLKETHIPEESVEVRRLMITPTGAQCLPPQVELSNRV 445 Query: 931 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRVRGILS 752 LR YR +SDRF+RV F DE + L SG LS+ A + K+ + + +T +F RVR I Sbjct: 446 LRNYREISDRFIRVTFTDEGLQTLNSGVLSIYTAPIVKDFSHIKPSQKTTIFRRVRSIAF 505 Query: 751 RGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKHAARMG 572 GF LCGRRYSFLAFS+NQLRD SAWFFA+ + T + IRSWMGKF + NVAK AARMG Sbjct: 506 DGFNLCGRRYSFLAFSSNQLRDRSAWFFADTEKTTADSIRSWMGKFTD-KNVAKCAARMG 564 Query: 571 QCFSSTYSTVDVGRRQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAF 395 CFSSTY+TV+V ++ ++ +IERNGY FSDGIGKI+P+LA +V +L+L+ NPP A+ Sbjct: 565 MCFSSTYATVEVDQKDVNFKLAEIERNGYVFSDGIGKITPELATQVASKLKLSENPPCAY 624 Query: 394 QIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITL 215 Q+R+ G KGV+ TWP + KL +RPSM KF H LE+I+WTRF P YLNR+IITL Sbjct: 625 QVRYAGCKGVIVTWPGDG--KAKLSIRPSMVKFQSKHSILEVITWTRFQPGYLNRQIITL 682 Query: 214 LSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKK 35 LS L V ++ F +LQ+SMVS L ++L EVA ++T+SC G NTAA+M+ AGFTP+ Sbjct: 683 LSTLKVPNEAFLELQDSMVSDLSQILVNTEVAHKVVTNSC-GEQANTAAIMLSAGFTPQT 741 Query: 34 EPHLKDLLTAI 2 EPHL+++L+ I Sbjct: 742 EPHLREMLSCI 752 >ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Cicer arietinum] Length = 1201 Score = 421 bits (1083), Expect = e-115 Identities = 227/437 (51%), Positives = 298/437 (68%), Gaps = 5/437 (1%) Frame = -2 Query: 1297 VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMAL 1118 VP FF I QK I F+ +L+N ++HKGI N +SL+ +F+ +L P + AL Sbjct: 313 VPMSSAFFYIDFQKDITFDIMFLINAIVHKGIFNQYSLSYKFFELLRSQ--PKDVNVAAL 370 Query: 1117 RHMHSYGNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEI 950 +H+ SY ++D L E +L++ + + D MEVRRL+ITPTKAYC PE+ Sbjct: 371 KHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYEISKQFDDIMEVRRLVITPTKAYCIAPEV 430 Query: 949 ELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSR 770 ELSNRVLRR+R VSDRFLRV F+DE M L AL+ VA + KE ++ +T ++ R Sbjct: 431 ELSNRVLRRFREVSDRFLRVTFMDEGMQTLNVHALNYYVAPIVKEITSNSFPQKTRIYKR 490 Query: 769 VRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAK 590 V+ IL GF CGR+YSFLAFS+NQLRD SAWFFA + IT +DIR+WMGKF + NVAK Sbjct: 491 VKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDNNITCDDIRNWMGKFNQ-RNVAK 549 Query: 589 HAARMGQCFSSTYSTVDVGRRQFRE-IEDIERNGYTFSDGIGKISPDLALEVTRRLQLNI 413 AARMGQCFSSTY++V+V + + D+ERN Y FSDGIG I+ DLA+EV +L+L+ Sbjct: 550 CAARMGQCFSSTYASVEVAANEVNSMLADVERNNYVFSDGIGIITNDLAVEVAEKLKLD- 608 Query: 412 NPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLN 233 PSA+QIR+ G+KGVV+ WP G +L LRPSM+KF H TLEI +WTRF P +LN Sbjct: 609 KVPSAYQIRYAGFKGVVACWP-PKGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLN 667 Query: 232 REIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGA 53 R+IITLLSAL V D +F D+Q M+SRL +ML +VAFD+LT SC+ N AA+M+ Sbjct: 668 RQIITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCA-EHGNAAAIMLSC 726 Query: 52 GFTPKKEPHLKDLLTAI 2 GF+PK EPHL+ +L +I Sbjct: 727 GFSPKTEPHLRGMLNSI 743 >ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer arietinum] Length = 1247 Score = 421 bits (1083), Expect = e-115 Identities = 227/437 (51%), Positives = 298/437 (68%), Gaps = 5/437 (1%) Frame = -2 Query: 1297 VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMAL 1118 VP FF I QK I F+ +L+N ++HKGI N +SL+ +F+ +L P + AL Sbjct: 359 VPMSSAFFYIDFQKDITFDIMFLINAIVHKGIFNQYSLSYKFFELLRSQ--PKDVNVAAL 416 Query: 1117 RHMHSYGNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEI 950 +H+ SY ++D L E +L++ + + D MEVRRL+ITPTKAYC PE+ Sbjct: 417 KHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYEISKQFDDIMEVRRLVITPTKAYCIAPEV 476 Query: 949 ELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSR 770 ELSNRVLRR+R VSDRFLRV F+DE M L AL+ VA + KE ++ +T ++ R Sbjct: 477 ELSNRVLRRFREVSDRFLRVTFMDEGMQTLNVHALNYYVAPIVKEITSNSFPQKTRIYKR 536 Query: 769 VRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAK 590 V+ IL GF CGR+YSFLAFS+NQLRD SAWFFA + IT +DIR+WMGKF + NVAK Sbjct: 537 VKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDNNITCDDIRNWMGKFNQ-RNVAK 595 Query: 589 HAARMGQCFSSTYSTVDVGRRQFRE-IEDIERNGYTFSDGIGKISPDLALEVTRRLQLNI 413 AARMGQCFSSTY++V+V + + D+ERN Y FSDGIG I+ DLA+EV +L+L+ Sbjct: 596 CAARMGQCFSSTYASVEVAANEVNSMLADVERNNYVFSDGIGIITNDLAVEVAEKLKLD- 654 Query: 412 NPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLN 233 PSA+QIR+ G+KGVV+ WP G +L LRPSM+KF H TLEI +WTRF P +LN Sbjct: 655 KVPSAYQIRYAGFKGVVACWP-PKGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLN 713 Query: 232 REIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGA 53 R+IITLLSAL V D +F D+Q M+SRL +ML +VAFD+LT SC+ N AA+M+ Sbjct: 714 RQIITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCA-EHGNAAAIMLSC 772 Query: 52 GFTPKKEPHLKDLLTAI 2 GF+PK EPHL+ +L +I Sbjct: 773 GFSPKTEPHLRGMLNSI 789 >dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 421 bits (1083), Expect = e-115 Identities = 225/431 (52%), Positives = 298/431 (69%), Gaps = 5/431 (1%) Frame = -2 Query: 1279 FFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMALRHMHSY 1100 FF N+ I F+ +L+N ++HKGI+N H + + F+ +L + ++ AL+HM SY Sbjct: 320 FFCFQNEG-ISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEV--NSAALKHMFSY 376 Query: 1099 GNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 932 + D +L I L++ + L D +EVRRL+ITPTKAYC PP +ELSNRV Sbjct: 377 KWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRV 436 Query: 931 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSRVRGILS 752 LR Y+ V+DRFLRV F+DE M L L+ A++ +E ++ + RTA+F RV+ ILS Sbjct: 437 LRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILS 496 Query: 751 RGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAKHAARMG 572 +GF LCGR+YSFLAFSANQLRD SAWFFA I I SWMG+F NVAK AARMG Sbjct: 497 KGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMG 555 Query: 571 QCFSSTYSTVDVGRRQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAF 395 QCFSSTY+TV+V R+ E+ DIERNGY FSDGIG IS DLA+EV +L L++NPPSA+ Sbjct: 556 QCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAY 615 Query: 394 QIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITL 215 QIR+ G KGVV+ WP + +L LRPSM KFD +H LEI SWTRF P +LNR+I+TL Sbjct: 616 QIRYAGCKGVVACWPTK-NDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTL 674 Query: 214 LSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKK 35 LS+L VKD +F ++Q M+S L +ML +VAFD++T+SC+ NTAA+M+ AGF P+ Sbjct: 675 LSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GNTAAIMLSAGFKPQS 733 Query: 34 EPHLKDLLTAI 2 EPHL+ +L++I Sbjct: 734 EPHLRGMLSSI 744 >ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus sinensis] Length = 1025 Score = 421 bits (1081), Expect = e-115 Identities = 224/439 (51%), Positives = 308/439 (70%), Gaps = 7/439 (1%) Frame = -2 Query: 1297 VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMAL 1118 VP FF I ++ I FE +L+N ++HKGI+N H L+D F+ +L + + AL Sbjct: 313 VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV--NVAAL 370 Query: 1117 RHMHSYGNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEI 950 +H++SY ++D C L E +L+ K P D +EVRRL+ITPTKAYC PPE+ Sbjct: 371 KHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEV 430 Query: 949 ELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKE-GFNDFSANRTAVFS 773 ELSNRVLR+Y+ ++DRFLRV F+DE + + + LS +A + ++ N FS +T VF Sbjct: 431 ELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFS-QKTRVFK 489 Query: 772 RVRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVA 593 RVR ILS GF LCGR++SFLAFS++QLRD SAWFF+ + DI+ WMG+F + N+A Sbjct: 490 RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIA 548 Query: 592 KHAARMGQCFSSTYSTVDVGRRQF-REIEDIERNGYTFSDGIGKISPDLALEVTRRLQLN 416 K AARMGQCFSSTY+TV+V + E+ DI+RNGY FSDGIGKI+PDLA+EV ++L+L+ Sbjct: 549 KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608 Query: 415 IN-PPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAY 239 +N PP A+QIR+ G KGVV+ WP + G ++ LR SM+KF H TLEI SWTRF P + Sbjct: 609 VNPPPCAYQIRYAGCKGVVACWPAK-GDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGF 667 Query: 238 LNREIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMI 59 LNR+IITLLS L V D++F +Q+SM+S+L +ML +VAF++LT++C+ NTAA+M+ Sbjct: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA-EQGNTAAIML 726 Query: 58 GAGFTPKKEPHLKDLLTAI 2 AGF P+ EPHL+ +LT I Sbjct: 727 SAGFNPQTEPHLRGMLTCI 745 >ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Citrus sinensis] Length = 1197 Score = 421 bits (1081), Expect = e-115 Identities = 224/439 (51%), Positives = 308/439 (70%), Gaps = 7/439 (1%) Frame = -2 Query: 1297 VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMAL 1118 VP FF I ++ I FE +L+N ++HKGI+N H L+D F+ +L + + AL Sbjct: 313 VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV--NVAAL 370 Query: 1117 RHMHSYGNQIYDPCVEL----ERILQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEI 950 +H++SY ++D C L E +L+ K P D +EVRRL+ITPTKAYC PPE+ Sbjct: 371 KHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEV 430 Query: 949 ELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKE-GFNDFSANRTAVFS 773 ELSNRVLR+Y+ ++DRFLRV F+DE + + + LS +A + ++ N FS +T VF Sbjct: 431 ELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFS-QKTRVFK 489 Query: 772 RVRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVA 593 RVR ILS GF LCGR++SFLAFS++QLRD SAWFF+ + DI+ WMG+F + N+A Sbjct: 490 RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIA 548 Query: 592 KHAARMGQCFSSTYSTVDVGRRQF-REIEDIERNGYTFSDGIGKISPDLALEVTRRLQLN 416 K AARMGQCFSSTY+TV+V + E+ DI+RNGY FSDGIGKI+PDLA+EV ++L+L+ Sbjct: 549 KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608 Query: 415 IN-PPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAY 239 +N PP A+QIR+ G KGVV+ WP + G ++ LR SM+KF H TLEI SWTRF P + Sbjct: 609 VNPPPCAYQIRYAGCKGVVACWPAK-GDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGF 667 Query: 238 LNREIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMI 59 LNR+IITLLS L V D++F +Q+SM+S+L +ML +VAF++LT++C+ NTAA+M+ Sbjct: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA-EQGNTAAIML 726 Query: 58 GAGFTPKKEPHLKDLLTAI 2 AGF P+ EPHL+ +LT I Sbjct: 727 SAGFNPQTEPHLRGMLTCI 745 >gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] Length = 1197 Score = 421 bits (1081), Expect = e-115 Identities = 234/455 (51%), Positives = 304/455 (66%), Gaps = 6/455 (1%) Frame = -2 Query: 1348 VERLFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRF 1172 VE LRVR E V FF N+ I F+ +L+N ++HKGI+N H + + F Sbjct: 296 VEMCNRKMLRVRDEPDFGVSMSDPFFCFQNEG-ISFKVMFLVNAVLHKGIVNQHQMTNEF 354 Query: 1171 YRMLYPAFTPLAQSTMALRHMHSYGNQIYDPCVELERI----LQHYRHLKAPFIGPDTME 1004 + +L + + AL+HM SY + D +L I L++ + L+ D +E Sbjct: 355 FYLLRSHQEEV--NLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVE 412 Query: 1003 VRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASV 824 VRRL+ITPTKAYC PP +ELSNRVLR Y+ V+DRFLRV F+DE M L L+ A++ Sbjct: 413 VRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATI 472 Query: 823 AKEGFNDFSANRTAVFSRVRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITT 644 +E ++ + RTA+F RV+ ILSRGF LCGR+YSFLAFSANQLRD SAWFFA I Sbjct: 473 VREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRV 532 Query: 643 NDIRSWMGKFQEITNVAKHAARMGQCFSSTYSTVDVGRRQFR-EIEDIERNGYTFSDGIG 467 I SWMG+F NVAK AARMGQCFSSTY+TV+V + E+ DIERNGY FSDGIG Sbjct: 533 PGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIG 591 Query: 466 KISPDLALEVTRRLQLNINPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCD 287 IS DLALEV +L L++NPPSA+QIR+ G KGVV+ WP + L LRPSM KFD + Sbjct: 592 MISADLALEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTK-NDGILLSLRPSMKKFDSN 650 Query: 286 HRTLEIISWTRFLPAYLNREIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDIL 107 H LEI SWTRF P +LNR+I+TLLS+L VKD +F ++Q M+S L +ML +VAFD++ Sbjct: 651 HTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVI 710 Query: 106 TSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTAI 2 T+SC+ NTAA+M+ AGF P+ EPHL+ +L++I Sbjct: 711 TASCAEA-GNTAAIMLSAGFKPQSEPHLRGMLSSI 744 >gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] Length = 1197 Score = 420 bits (1080), Expect = e-115 Identities = 233/455 (51%), Positives = 305/455 (67%), Gaps = 6/455 (1%) Frame = -2 Query: 1348 VERLFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRF 1172 VE LRVR E V FF N+ I F+ +L+N ++HKGI+N H + + F Sbjct: 296 VEMCNRKMLRVRDEPDFGVSMSDPFFCFQNEG-ISFKVMFLVNAVLHKGIVNQHQMTNEF 354 Query: 1171 YRMLYPAFTPLAQSTMALRHMHSYGNQIYDPCVELERI----LQHYRHLKAPFIGPDTME 1004 + +L + + AL+HM SY + D +L I L++ + L+ D +E Sbjct: 355 FYLLRSHQEEV--NLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVE 412 Query: 1003 VRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASV 824 VRRL+ITPTKAYC PP +ELSNRVLR Y+ V+DRFLRV F+DE M L L+ A++ Sbjct: 413 VRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATI 472 Query: 823 AKEGFNDFSANRTAVFSRVRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITT 644 +E ++ + RTA+F RV+ ILSRGF LCGR+YSFLAFSANQLRD SAWFFA I Sbjct: 473 VREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRV 532 Query: 643 NDIRSWMGKFQEITNVAKHAARMGQCFSSTYSTVDVGRRQFR-EIEDIERNGYTFSDGIG 467 I SWMG+F NVAK AARMGQCFSSTY+TV+V + E+ DIERNGY FSDGIG Sbjct: 533 PGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIG 591 Query: 466 KISPDLALEVTRRLQLNINPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCD 287 IS DLA+EV +L L++NPPSA+QIR+ G KGVV+ WP + +L LRPSM KFD + Sbjct: 592 MISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTK-NDGIRLSLRPSMKKFDSN 650 Query: 286 HRTLEIISWTRFLPAYLNREIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDIL 107 H LEI SWTRF P +LNR+I+TLLS+L VKD +F ++Q M+S L +ML +VAFD++ Sbjct: 651 HTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVI 710 Query: 106 TSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTAI 2 T+SC+ NTAA+M+ AGF P+ EPHL+ +L++I Sbjct: 711 TASCAEA-GNTAAIMLSAGFKPQSEPHLRGMLSSI 744 >gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] Length = 1194 Score = 418 bits (1075), Expect = e-114 Identities = 222/448 (49%), Positives = 303/448 (67%), Gaps = 6/448 (1%) Frame = -2 Query: 1327 SLRVRPE-GHVVPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPA 1151 +LR++ E VP F + + I FE +LLN ++HKGI N H+++D + + Sbjct: 298 ALRIQSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQ 357 Query: 1150 FTPLAQSTMALRHMHSYGNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIIT 983 P + AL+H+ SY ++D +L+ + L++ + LK P D EVRRL+IT Sbjct: 358 --PREINLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVIT 415 Query: 982 PTKAYCFPPEIELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFND 803 PT+AYC PPE+ELSNRVLR+Y+ VSDRFLRV F+DE M + L+ A + KE ++ Sbjct: 416 PTRAYCLPPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSN 475 Query: 802 FSANRTAVFSRVRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWM 623 ++ +T VF RV+ +L+ GF LCG+RYSFLAFS+NQLRD SAWFFA IT N I+ WM Sbjct: 476 STSQKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWM 535 Query: 622 GKFQEITNVAKHAARMGQCFSSTYSTVDVGRRQFR-EIEDIERNGYTFSDGIGKISPDLA 446 G+F N+AK AARMGQCFSSTY+TV+V + ++E+IERN Y FSDGIG I+PDLA Sbjct: 536 GRFNN-RNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLA 594 Query: 445 LEVTRRLQLNINPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEII 266 EV +L+L+INPPSA+QIR+ G KGVV+ WP G +L LR SM+KFD H LEI Sbjct: 595 KEVAEKLKLDINPPSAYQIRYAGCKGVVACWP-PKGDGIRLSLRRSMNKFDSKHTILEIC 653 Query: 265 SWTRFLPAYLNREIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGV 86 SWTRF P +LNR+I+TLLS L V+D++F +Q +M+ +L +ML +VAF++LT+SC Sbjct: 654 SWTRFQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCP-E 712 Query: 85 LPNTAAVMIGAGFTPKKEPHLKDLLTAI 2 N A+M+ AGF P+ EPHL+ +LT I Sbjct: 713 QGNVGAIMLSAGFKPQSEPHLQGMLTCI 740 >ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula] gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula] Length = 1188 Score = 417 bits (1072), Expect = e-114 Identities = 220/437 (50%), Positives = 300/437 (68%), Gaps = 5/437 (1%) Frame = -2 Query: 1297 VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPAFTPLAQSTMAL 1118 VP FF I +QK I F+ +L+N ++H+GI N +SL+++F+ +L P + AL Sbjct: 300 VPMSDAFFYIDSQKDISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQ--PKDVNVAAL 357 Query: 1117 RHMHSYGNQIYDPCVELERI----LQHYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEI 950 +H+ +Y + ++D LE + L++ + + D MEVRRL++TPTKAYC PE+ Sbjct: 358 KHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVVTPTKAYCISPEV 417 Query: 949 ELSNRVLRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVASVAKEGFNDFSANRTAVFSR 770 ELSNRVLRR+R VSDRFLRV F+DE L + AL+ VA + KE ++ +T ++ R Sbjct: 418 ELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKR 477 Query: 769 VRGILSRGFELCGRRYSFLAFSANQLRDHSAWFFANGDGITTNDIRSWMGKFQEITNVAK 590 V+ IL GF CGR+YSFLAFS+NQLRD SAWFFA IT +DIR+WMG+F + NVAK Sbjct: 478 VKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQ-KNVAK 536 Query: 589 HAARMGQCFSSTYSTVDVGRRQFRE-IEDIERNGYTFSDGIGKISPDLALEVTRRLQLNI 413 AARMGQCFSSTY++V+V + + D+ERN Y FSDGIG I+ DLA+EV +L+L+ Sbjct: 537 CAARMGQCFSSTYASVEVPANEVNSMLPDVERNNYVFSDGIGIITTDLAVEVAEKLKLD- 595 Query: 412 NPPSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLN 233 PSA+QIR+ G+KGVV+ WP + G KL LRPSM+KF H TLEI +WTRF P +LN Sbjct: 596 KAPSAYQIRYAGFKGVVACWPAK-GDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLN 654 Query: 232 REIITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGA 53 R+IITLLSAL V D++F +Q M+S L +ML +VA+D+LT SC+ N AA+M+ Sbjct: 655 RQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLTKSCA-EHGNAAAIMLSC 713 Query: 52 GFTPKKEPHLKDLLTAI 2 GF+PK EPHL+ +L +I Sbjct: 714 GFSPKTEPHLRGMLNSI 730