BLASTX nr result
ID: Ephedra28_contig00011697
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00011697
(3968 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 964 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 942 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 939 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 937 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 936 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 935 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 935 0.0
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 934 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 929 0.0
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 929 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 929 0.0
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 927 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 927 0.0
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 921 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 921 0.0
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 921 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 919 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 919 0.0
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 918 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 917 0.0
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 964 bits (2492), Expect = 0.0
Identities = 549/1132 (48%), Positives = 722/1132 (63%), Gaps = 27/1132 (2%)
Frame = -1
Query: 3632 GMATES-RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQL 3456
G+++E RTV+++ P GT A + LE I G V KI + + AIVQ
Sbjct: 69 GVSSEGGRTVQVSGFPQGTCAEAVKKFLESITGF-GTVYHLKIRIHKSKPNSRVFAIVQF 127
Query: 3455 DRSFLARKLCTTLP-------ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHN 3297
S A + + P ++ + + D+V PR + + + +L+FG Q+S
Sbjct: 128 TTSKSAEVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEE 187
Query: 3296 RYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLV 3117
+A+LW+ +++V+ EF +KK+F L G+ Y+L L + ++ + + YLV
Sbjct: 188 SFAILWS-NTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLV 246
Query: 3116 IQVYCAPKIYYKEPS--SDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLEL 2943
+Q+ AP+I+ K S SD+ D + ++K D QW+R+ DFT + SIG S+S+CL L
Sbjct: 247 LQMQGAPRIFQKPLSFSSDIYDSP-LFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLAL 305
Query: 2942 LDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNAL 2763
+G + I+ +F YK+I +L LVP PYKILF+VN+L
Sbjct: 306 PNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSL 365
Query: 2762 VQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYS--GPTYTPEKSLKKIIYDKK 2589
VQ G L P L EF+ LL +V R L + ++ P ++ KK Y
Sbjct: 366 VQNGFLVGPTLDTEFYNLLNGLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKK--YRNL 423
Query: 2588 ARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDE 2409
RR + L+ GL+ VHRVQVTP+KVY +GPEV+VSNRV+RQFS YID+F+R+SFIDE
Sbjct: 424 PRRPSPAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDE 483
Query: 2408 DERQLFATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLW 2232
D + +TDL ++M +G E+K+T +Y R+LS KFEFLAFSSSQLR++S W
Sbjct: 484 DFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAW 543
Query: 2231 MFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIE 2052
MF+ + +TA IR WMG+F IRNVAKCAARMGQ F SS +TL V EVE +DI
Sbjct: 544 MFSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIK-- 601
Query: 2051 RDSDSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSL 1875
+ YVFSDGIGKIS+ A+++A+ CGC + PSAFQIRYGGYKGVVA+DPTS YKLSL
Sbjct: 602 --NGKYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSL 659
Query: 1874 RPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLIL 1695
R SMRK+ S N +DVL+++KF+PCFLNRQ+ITLLSTLGV+D FE Q++ +++LD IL
Sbjct: 660 RGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKIL 719
Query: 1694 DHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIF 1515
+ A E L++MS GEN NV+ ML CGY P EP+LSM+L FR KL ELK K RIF
Sbjct: 720 VDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIF 779
Query: 1514 VPKGRCLMGCLDEYRILEYGEIFVQVTE--PRSSLHFGTTGNQTS---IRKRIITGTVIV 1350
+P GR +MGCLDE ILEYG++FVQ + R FG + S R R++ G VIV
Sbjct: 780 IPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIV 839
Query: 1349 AKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDES 1170
AKNPCLHPGDVRIL A+D P LHH+V+CVVFPQKGKRPHPNECSGSDLDGD+YFV WD
Sbjct: 840 AKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPM 899
Query: 1169 LIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMA 990
LIP PM+Y P L+ VTIE+I+E+F NYM+NDS+GII+ HTVFAD + A
Sbjct: 900 LIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKA 959
Query: 989 RSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRA 810
S C+ LA LF++AVDFPKTGVPA IP L +EYPDFM+K DKPTY S+RVIGKL+R
Sbjct: 960 DSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFRE 1019
Query: 809 VKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIR 630
VKD + I+SFTK VA K+YD D+EV ++ Y+D A K+ YD L +M YGI+
Sbjct: 1020 VKDLPPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIK 1079
Query: 629 YEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDL--- 459
EAEIVSGNI SL+K +K D + L ++SL++E R WF ++ +Y L
Sbjct: 1080 TEAEIVSGNILSLAKSF-TKRRDAEAIALA-MRSLRKEVRGWFKEKRSVVDEGDYSLDDD 1137
Query: 458 ----ASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 318
ASAWYHITYHP YWG Y E D + H ISFPW +YDKL+ IKR++
Sbjct: 1138 VYAKASAWYHITYHPEYWGSYFEEDGRN--RAHFISFPWCIYDKLIHIKRHR 1187
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 942 bits (2436), Expect = 0.0
Identities = 532/1122 (47%), Positives = 714/1122 (63%), Gaps = 23/1122 (2%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQLDR----- 3450
+T+++ P + + + T +E E G V + K L+ R A AI+Q
Sbjct: 3 KTIELYGFPTSVNVSDVKTFVEQYTGE-GTVFAIK-LRHGKGRVPRAFAIIQFTTANSAT 60
Query: 3449 SFLARK---LCTTLPASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 3279
S ++R L T ++ ++A + RD+V +PR + +L FGCQ+S R++VLW
Sbjct: 61 SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120
Query: 3278 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCA 3099
DV F S ++K+ + + Y+L LS+ ++ + + + YL+IQ+ A
Sbjct: 121 K-KQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179
Query: 3098 PKIYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 2922
P+++ + P+S + FFK D QWIR DFT IG S++ICLEL +G +
Sbjct: 180 PRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLP 239
Query: 2921 VIKNSFYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILS 2742
+ +F Y++ +L LVP Y ILF+VN+LVQ L+
Sbjct: 240 NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLA 299
Query: 2741 WPALGREFFRLLEPKS--EEYVGRILFALQEISYSGP-TYTPEKSL----KKIIYDKKAR 2583
PAL +F+RL++P+ E++ +AL++I YS Y P K L K + K
Sbjct: 300 GPALDGDFYRLVDPRRMPREFIE---YALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHP 356
Query: 2582 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 2403
R + LD GL+ V RVQ+TP KVY GPE++VSNRV+R F E+ID+F+RVSF+DE+
Sbjct: 357 RSPAIS--LDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEEL 414
Query: 2402 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFA 2223
+LF+TDL + N K T++Y RILS KFEFLAFSSSQLRE+SLWMFA
Sbjct: 415 DKLFSTDLSSRSQN---KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFA 471
Query: 2222 SNEQ-VTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDIT-IER 2049
E TA IR WMGNF IRNVAK AAR+GQ F SS +TL V+ EVE D+ +
Sbjct: 472 PTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTY 531
Query: 2048 DSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 1869
D + YVFSDGIGKIS+ A+++A CG D PSAFQIRYGGYKGVVA+DP S YKLSLR
Sbjct: 532 DGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRK 591
Query: 1868 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDH 1689
SMRK+DS+N +DVL+ +KF+PC+LNRQ+I+LLSTLG++D+ FE Q+E +N+L+ IL
Sbjct: 592 SMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTD 651
Query: 1688 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVP 1509
A EVL +MS GE NV+ ML CGY P +EP+LSM+L FRA+KLLEL+ K+RIF+P
Sbjct: 652 SLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIP 711
Query: 1508 KGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLH 1329
KGR +MGCLDE R LEYG++FVQ + R + + ++ G V+VAKNPCLH
Sbjct: 712 KGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLH 771
Query: 1328 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 1149
PGDVR+L+AVD P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP
Sbjct: 772 PGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPI 831
Query: 1148 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLK 969
PMDY AP + L+ V IE+++E+FANY++NDS+GII+ HTVFAD + A SD C+K
Sbjct: 832 DPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVK 891
Query: 968 LAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQ 789
LA+LF+ AVDFPKTGVPA IP +L +EYPDFMEK DKPTY S VIGKL+R VK+ +T
Sbjct: 892 LARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTS 951
Query: 788 SLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVS 609
+ +I+SFTK VA +YD ++EV + DY+D AF K YD L ++M YGI+ EAEI+
Sbjct: 952 AGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILG 1011
Query: 608 GNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFD----ADVRELEANEYDLASAWYH 441
GNI +SK + E + V+SL++E R+WF+ DV ++ Y ASAWYH
Sbjct: 1012 GNIMKMSKSFNKRRD--AEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYH 1069
Query: 440 ITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 318
+TYHP YWG Y E + D H +SF W VY L++IK+ K
Sbjct: 1070 VTYHPSYWGCYNEGMNRD----HYLSFSWCVYPLLVQIKKEK 1107
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 939 bits (2426), Expect = 0.0
Identities = 522/1119 (46%), Positives = 717/1119 (64%), Gaps = 18/1119 (1%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQLDRSFLAR 3435
+T+++ P A + + LE G VC+ ++ + +A VQ + A
Sbjct: 3 KTIQVFGFPYLLSAEVVKSFLEKYTGY-GTVCALEVKQSKGGSRAFAK--VQFADNISAD 59
Query: 3434 KLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 3270
K+ T S+ ++A + D+V R + L+FGCQ+S +++AVL +
Sbjct: 60 KIITLANNRLYFGSSYLKAWEMKTDIVQL-RAYVDQMDGITLNFGCQISDDKFAVLGS-- 116
Query: 3269 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKI 3090
++V +F +KK F L+ Y+L LS+ ++ + + +L+IQ++ AP+I
Sbjct: 117 TEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 3089 YYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKN 2910
Y + +S FFK D+QW+RTTDF ++ IG S+S+CL+ G + +
Sbjct: 177 YKRLENS-------CYSFFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRGVRLPNFEE 228
Query: 2909 SFYNYKDIRENLSLHINXXXXXXSR--LVPSXXXXXXXXXPYKILFQVNALVQEGILSWP 2736
SF++Y + N++L + LVP+ PYKILF++++LVQ G + P
Sbjct: 229 SFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGP 288
Query: 2735 ALGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFN 2565
AL FFRL++P+ V I AL+++ Y Y P + L + Y K + +
Sbjct: 289 ALNVYFFRLVDPRRRN-VACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPS 347
Query: 2564 TYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFAT 2385
LDDGL+ V RV VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++T
Sbjct: 348 ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 407
Query: 2384 DLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASNEQVT 2205
DL K G T +Y RILS KFEFLAFSSSQLR++S+WMFAS +T
Sbjct: 408 DLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLT 467
Query: 2204 AETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFS 2025
A IRAWMG+F I+NVAK AAR+GQ F SS++TL V E+E D+ + SYVFS
Sbjct: 468 ANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFS 525
Query: 2024 DGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSE 1845
DGIGKIS A +A CG Y PSAFQIRYGGYKGVV +DP SS KLSLR SM K++S+
Sbjct: 526 DGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESD 585
Query: 1844 NRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVL 1665
N +DVL W+K++PC+LNRQ+ITLLSTLGV+DE E Q+E +++LD IL A E L
Sbjct: 586 NIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEAL 645
Query: 1664 QIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGC 1485
++MS GEN N++ ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+P GR +MGC
Sbjct: 646 ELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGC 705
Query: 1484 LDEYRILEYGEIFVQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 1320
LDE R LEYG++FVQ T E LH T+ I+ G V+VAKNPCLHPGD
Sbjct: 706 LDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTN-SNFILKGNVVVAKNPCLHPGD 764
Query: 1319 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 1140
+R+L+AV+ LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP PM
Sbjct: 765 IRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPM 824
Query: 1139 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQ 960
+Y P I L+ VTIE+++E+F NY++NDS+GII+ H VFAD + +MA SD C KLA+
Sbjct: 825 EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAE 884
Query: 959 LFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLT 780
LF++AVDFPKTGVPA+IPS L P+EYPDFM+K DK +YIS+RVIGKL+R VKD A Q+ +
Sbjct: 885 LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASS 944
Query: 779 ISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 600
I++FT++VA ++YD D+EV ++DYID AF K YD+ L ++M YGI+ EAEI+SG I
Sbjct: 945 IATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1004
Query: 599 FSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDA--DVRELEANEYDLASAWYHITYHP 426
SK + E + V++L++E R+WF D+ ++ ASAWYH+TYHP
Sbjct: 1005 MKASKTFDRRKD--AEAISVAVRALRKEARAWFKRRNDIDDM----LPKASAWYHVTYHP 1058
Query: 425 YYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTR 312
YWG Y + + H ISFPW VYD+L++IK++K R
Sbjct: 1059 TYWGCYNQG----LKRAHFISFPWCVYDQLIQIKKDKAR 1093
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 937 bits (2421), Expect = 0.0
Identities = 520/1090 (47%), Positives = 702/1090 (64%), Gaps = 19/1090 (1%)
Frame = -1
Query: 3530 GCVCSAKILKQTNPRHVYAHAIVQLDRSFLARKLCTTLP-----ASTLMQATVLPRDMVS 3366
G VC+ ++ + +A VQ + A K+ S+ ++A + D+V
Sbjct: 30 GTVCALEVKQSKGGSRAFAK--VQFVDNISADKIINLASKRLYFGSSYLKAWEMKTDIVQ 87
Query: 3365 KPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLV 3186
R H+ L+FGCQ+S +++AVL + ++V +F +KK F L+ Y+L
Sbjct: 88 L-RAYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKKFFFFLSSGSADYKLQ 144
Query: 3185 LSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWI 3006
LS+ ++ + + +L+IQ++ AP+IY + +S FFK D+QW+
Sbjct: 145 LSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWV 197
Query: 3005 RTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXSR--L 2832
RTTDF ++ IG S+S+CL+ G + SF++Y + N++L + L
Sbjct: 198 RTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSAL 256
Query: 2831 VPSXXXXXXXXXPYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEI 2652
VP+ PYKILF++++LVQ G + PAL FFRL++P+ V I AL+++
Sbjct: 257 VPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQRRN-VACIEQALEKL 315
Query: 2651 SYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVD 2481
Y Y P + L + Y K + + LDDGL+ V RV VTP KVY GPEV+
Sbjct: 316 YYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVN 375
Query: 2480 VSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXX 2301
VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G T +Y+RILS
Sbjct: 376 VSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYVRILSTLQKGF 435
Query: 2300 XXXXXKFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCF 2121
KFEFLAFSSSQLR++S+WMFAS +TA IR WMG+F I+NVAK AAR+GQ F
Sbjct: 436 VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSF 495
Query: 2120 SSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQ 1941
SSK+TL V E+E D+ + SYVFSDGIGKIS A +A CG Y PSAFQ
Sbjct: 496 GSSKETLSVLRHEIEIIPDVKVH--GTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQ 553
Query: 1940 IRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTL 1761
IRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++PCFLNRQ++TLLSTL
Sbjct: 554 IRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTL 613
Query: 1760 GVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYL 1581
GV+D+ E Q+E +++LD IL A E L++MS GEN N++ ML CGY P EP+L
Sbjct: 614 GVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFL 673
Query: 1580 SMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSL 1416
SM+L FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++FVQ T E L
Sbjct: 674 SMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDL 733
Query: 1415 HFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRP 1236
H T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRP
Sbjct: 734 HPFNNSRSTNCNF-ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRP 792
Query: 1235 HPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYML 1056
HPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+ VTIE+++E+F NY++
Sbjct: 793 HPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIV 852
Query: 1055 NDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPD 876
NDS+GII+ H VFAD + +MA SD C KLA+LF++AVDFPKTGVPA+IPS L P+EYPD
Sbjct: 853 NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 912
Query: 875 FMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYID 699
FM+K DK TYIS+RVIGKLYR VKD A Q+ + + FT++VA ++YD DLEV ++DYID
Sbjct: 913 FMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYID 972
Query: 698 AAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQR 519
AF K YD+ L ++M YGI+ EAEI+SG I SK + E + V++L++
Sbjct: 973 EAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRK 1030
Query: 518 ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 348
E R+WF D+ ++ ASAWYH+TYHP YWG Y + + H ISFPW VY
Sbjct: 1031 EARTWFKRRNDIDDM----LPKASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1082
Query: 347 DKLLRIKRNK 318
D+L++IK+ K
Sbjct: 1083 DQLIQIKKEK 1092
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 936 bits (2420), Expect = 0.0
Identities = 528/1125 (46%), Positives = 703/1125 (62%), Gaps = 22/1125 (1%)
Frame = -1
Query: 3617 SRTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQLDRSFLA 3438
S+T+++ P A+++ LE E A +KQ HA VQ LA
Sbjct: 2 SKTIQVYGFPSIVSADEIKEFLEKYTGEG--TIEALEIKQPRSGASMTHAKVQFTSFELA 59
Query: 3437 RKLCTTLPAST-----LMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTC 3273
+ T ++A + D++ KPR + LHFGCQ+S R+ VLW
Sbjct: 60 EFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119
Query: 3272 DSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPK 3093
+V +F S ++K + L+ Y+L LS+ ++ + +L+IQ+ AP+
Sbjct: 120 -INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178
Query: 3092 IYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 2913
IY K+ ++ +FK D+QW+R DFT + IG S ++CLEL G++ +
Sbjct: 179 IYEKDVPV-------LSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFR 231
Query: 2912 NSFYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPA 2733
+F YK+ L LVP P++ILF++N LVQ G LS P
Sbjct: 232 ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291
Query: 2732 LGREFFRLLEPKSE-----EYVGRILFALQEISYSGPTYTPEKS---LKKIIYDKKARRY 2577
L FFRL++P+ E+ L+ L+E Y + E+ +KK + A
Sbjct: 292 LDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPA--- 348
Query: 2576 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 2397
LD GL+ V RVQ+TP KVY GPEV+VSNRV+R + E ID+F+RVSF+DE+ +
Sbjct: 349 ----ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEK 404
Query: 2396 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASN 2217
+ +T + +M E + T +Y RILS KF+FLAFSSSQLR++S WMFAS
Sbjct: 405 IHSTVISPRMSK-EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463
Query: 2216 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 2037
+TA IR+WMG+F IRNVAK AAR+GQ FSSSK+TL V + E+E+ DI I + +
Sbjct: 464 PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTT 523
Query: 2036 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1860
YVFSDGIGKIS LA +A+ CGC PSAFQIRYGGYKGVVA+DPTSS KLSLR SM
Sbjct: 524 YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 583
Query: 1859 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 1680
K++S+N N+DVL+W+K++P FLNRQ+ITLLSTLGV+D FE Q+ +++LD IL
Sbjct: 584 KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643
Query: 1679 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 1500
A E L++MS GEN NV+ ML CGY P EP+LSM+L FRAAKLLEL+ K RIFVP GR
Sbjct: 644 AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 703
Query: 1499 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNPCL 1332
+MGCLDE R LEYGE+FVQ++ FG + G+ + I+ G ++VAKNPCL
Sbjct: 704 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCL 763
Query: 1331 HPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDV 1152
HPGDVR+L AV+ P LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD LIPP
Sbjct: 764 HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823
Query: 1151 DMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCL 972
PMDY P L+ V IE+++E+F NY++NDS+GII+ HTVFAD + + A D C
Sbjct: 824 INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883
Query: 971 KLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHAT 792
+LA+LF++AVDFPKTGVPA+IP +L +EYPDFMEK DKPTY S+ VIGKL+R VKD A
Sbjct: 884 ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943
Query: 791 QSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIV 612
+ I SFT++VA ++YD D+EV ++DY+ AF K+ YD L ++M YGI+ E+EI+
Sbjct: 944 HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003
Query: 611 SGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDL---ASAWYH 441
SG+I +SK + E + VKSL++E R+WF+ E ++ D+ ASAWYH
Sbjct: 1004 SGSIMRMSKSFDRRKD--AEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYH 1061
Query: 440 ITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTRG 309
+TYHP YWG Y E D D H +SFPW VYDKL+ KR K G
Sbjct: 1062 VTYHPDYWGCYNEGMDRD----HFLSFPWCVYDKLIHTKRKKMSG 1102
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 935 bits (2417), Expect = 0.0
Identities = 530/1124 (47%), Positives = 704/1124 (62%), Gaps = 24/1124 (2%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQLDRSFLAR 3435
+T+++ P G A + LE + G A L+ +AIVQ A
Sbjct: 3 KTIQVFGFPAGVTAEAVKDFLES--KTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60
Query: 3434 KL----CTTLP---ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 3276
+ C T + + A + +D V +PR + LHFGC++S+ ++AVLW
Sbjct: 61 TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120
Query: 3275 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAP 3096
+V F ++K+ L+ G YRL L + ++ + + YL+IQ+ AP
Sbjct: 121 -GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAP 179
Query: 3095 KIYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 2919
+I+ K S D+ + FFK D+QW+RTTDFT + IG ST +C+EL +
Sbjct: 180 RIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPD 239
Query: 2918 IKNSFYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSW 2739
K +F YK+ + L LVP PY+ILF++N LVQ G ++
Sbjct: 240 FKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAG 299
Query: 2738 PALGREFFRLLEPKSE-------EYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARR 2580
P L F+RL++P E+ L+ L+E Y + ++ K + K
Sbjct: 300 PLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSS 359
Query: 2579 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 2400
A LDDGL+ VHRVQVTP++VY GPE++VSNRV+R F ID+F+R+SFIDED
Sbjct: 360 PA---ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 416
Query: 2399 QLFATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFA 2223
++ +TDL + + + T++Y RILS KFEFLAFSSSQLRESS WMFA
Sbjct: 417 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 476
Query: 2222 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 2043
S +TA IR WMGNF IRNVAK AAR+GQ FSSSK+TL V+ E+E D+ IE
Sbjct: 477 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 536
Query: 2042 DSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPS 1866
YVFSDGIGK+S A ++A CG D PSAFQIRYGGYKGVVA DPTSS KLSLR S
Sbjct: 537 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDS 596
Query: 1865 MRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHK 1686
MRK++SE +DVL+W+K++PCFLNRQ+I+LLSTLG+ DE FE Q+E + +LD IL
Sbjct: 597 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 656
Query: 1685 DMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPK 1506
A E L++MS GEN N++ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P
Sbjct: 657 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 716
Query: 1505 GRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR---IITGTVIVAKNPC 1335
GR +MGCLDE R L YG++FVQ++ G + +S R R I+ G V+VAKNPC
Sbjct: 717 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 776
Query: 1334 LHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPD 1155
LHPGDVR+L+AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP
Sbjct: 777 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 836
Query: 1154 VDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNC 975
D PMDY + L+ V IED++E+F NY++NDS+GII+ HTVFAD + ARS+ C
Sbjct: 837 QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPC 896
Query: 974 LKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHA 795
L+LA+ F++AVDFPKTGVPA+IP L +EYPDFMEK DKPTY S+ VIGKL+RAVKD A
Sbjct: 897 LQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIA 956
Query: 794 TQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEI 615
+ I FTKEVA ++YD D+EV ++D+ID A K YD L ++M YGI+ EAEI
Sbjct: 957 PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEI 1016
Query: 614 VSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF-DADVRELEANEYDLASAWYHI 438
++G+I +SK +K D E + V++L++E R+WF + + E + Y ASAWYH+
Sbjct: 1017 LTGSIMKMSKSF-TKRRDA-EAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHV 1074
Query: 437 TYHPYYWG---YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKT 315
TYHP YWG +G N D H +SFPW VYD+L+ IK++KT
Sbjct: 1075 TYHPDYWGCYNHGMNRD------HFLSFPWCVYDRLVEIKKDKT 1112
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 935 bits (2417), Expect = 0.0
Identities = 517/1092 (47%), Positives = 704/1092 (64%), Gaps = 19/1092 (1%)
Frame = -1
Query: 3530 GCVCSAKILKQTNPRHVYAHAIVQLDRSFLARKLCTTLP-----ASTLMQATVLPRDMVS 3366
G +C+ ++ + +A VQ + A K+ S+ ++A + D+V
Sbjct: 30 GTICALEVKQSKGGSRAFAK--VQFVDNISADKIINLASKRLYFGSSYLKAWEMKTDIVQ 87
Query: 3365 KPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLV 3186
R H+ L+FGCQ+S +++AVL + ++V +F +KK F L+ Y+L
Sbjct: 88 L-RAYVDHMDGITLNFGCQISEDKFAVLGS--TEVSIKFGIGLKKFFFFLSSGSADYKLQ 144
Query: 3185 LSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWI 3006
LS+ ++ + + +L+IQ++ AP+IY + +S FFK D+QW+
Sbjct: 145 LSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWV 197
Query: 3005 RTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXSR--L 2832
RTTDFT ++ IG S+S+CL+ G + SF++Y + N++L + L
Sbjct: 198 RTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSAL 256
Query: 2831 VPSXXXXXXXXXPYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEI 2652
VP+ PYKILF++++LVQ G + PAL FFRL++P+ V I AL+++
Sbjct: 257 VPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN-VACIEQALEKL 315
Query: 2651 SYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVD 2481
Y Y P + L + Y K + + LDDGL+ V RV VTP KVY GPEV+
Sbjct: 316 YYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVN 375
Query: 2480 VSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXX 2301
VSNRV+R +SE ID+F+RVSF+DE+ +L++T+L K G T +Y RILS
Sbjct: 376 VSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGF 435
Query: 2300 XXXXXKFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCF 2121
KFEFLAFSSSQLR++S+WMFAS +T IR+WMG+F I+NVAK AAR+GQ F
Sbjct: 436 VIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSF 495
Query: 2120 SSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQ 1941
SS++TL V E+E D+ + SYVFSDGIGKIS A +A CG Y PSAFQ
Sbjct: 496 GSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQ 553
Query: 1940 IRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTL 1761
IRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++PC+LNRQ++TLLSTL
Sbjct: 554 IRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTL 613
Query: 1760 GVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYL 1581
GV+D+ E Q+E +++LD IL A E L++MS GEN N++ ML CGY P EP+L
Sbjct: 614 GVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFL 673
Query: 1580 SMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSL 1416
SM+L FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++FVQ T E L
Sbjct: 674 SMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDL 733
Query: 1415 HFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRP 1236
H T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRP
Sbjct: 734 HPFNNSRSTNCNF-ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRP 792
Query: 1235 HPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYML 1056
HPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+ VTIE+++E+F NY++
Sbjct: 793 HPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIV 852
Query: 1055 NDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPD 876
NDS+GII+ H VFAD + +MA SD C KLA+LF++AVDFPKTGVPA+IPS L P+EYPD
Sbjct: 853 NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 912
Query: 875 FMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYID 699
FM+K DK TYIS+RVIGKL+R VKD A Q+ +I+ FT++VA ++YD DLEV ++DYID
Sbjct: 913 FMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYID 972
Query: 698 AAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQR 519
AF K YD+ L ++M YGI+ EAEI+SG I SK + E + V++L++
Sbjct: 973 EAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD--AEAISVAVRALRK 1030
Query: 518 ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 348
E R+WF D+ ++ ASAWYH+TYHP YWG Y + + H ISFPW VY
Sbjct: 1031 EARTWFKRRNDIDDM----LPKASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1082
Query: 347 DKLLRIKRNKTR 312
D+L++IK+ K R
Sbjct: 1083 DQLIQIKKEKAR 1094
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 934 bits (2413), Expect = 0.0
Identities = 535/1134 (47%), Positives = 711/1134 (62%), Gaps = 26/1134 (2%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKIL--KQTNPRHVYAHAIVQLDRSFL 3441
+T+ I+ P A+ + LEG G V + K+ K+ R +AIVQ +
Sbjct: 3 KTIHISGFPSHVTADAVKNFLEGHTGP-GTVYAIKVRPPKRGGGR---LYAIVQFTSATQ 58
Query: 3440 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 3276
A + + S+ ++A D+V KPR + L FGCQVS ++ VLW
Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118
Query: 3275 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAP 3096
+ D+ F ++K+ L + + YRL LS+ + + + YL+IQ+ AP
Sbjct: 119 GNVDL-VTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAP 177
Query: 3095 KIYYK-EPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 2919
+IY K P+S + FFK SD+QW+RTTDFT + SIG S+S+CL+L +G +
Sbjct: 178 RIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP 237
Query: 2918 IKNSFYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSW 2739
K +F Y++ L R + PYKILF++NALVQ G + W
Sbjct: 238 FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPW 297
Query: 2738 PALGREFFRLLEP------KSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 2577
P L F+RL+E + E+ LF L+E +Y + E+ Y K +R
Sbjct: 298 PLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQ------YRKYSRHP 351
Query: 2576 ADFNTY-LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 2400
+ LDDGL+ V RVQ+TP KV+ GPEV+VSNRV+R FS+YID+F+RVSF+DE+
Sbjct: 352 PNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWD 411
Query: 2399 QLFATDLCQKMPN-GEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFA 2223
++ +TDL +M + E T +Y RILS F+FLAFSSSQLR++SLWMFA
Sbjct: 412 KMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFA 471
Query: 2222 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 2043
S + A IRAWMG+F I+N AK AAR+GQ F SS + L V +E E DI +++
Sbjct: 472 SGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGE 531
Query: 2042 DSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1863
YVFSDGIGKIS A+E+A CG VPSAFQIRYGGYKGVVA+DP S+ KLSLR SM
Sbjct: 532 IKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSM 591
Query: 1862 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 1683
KF+S+N +DVL +K++PCFLNRQ+ITL+STLGVRDE FE Q E + +LD IL
Sbjct: 592 CKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPL 651
Query: 1682 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 1503
A E L++MS GEN N++ ML+CGY P EPYLSM+L FRA+KLLEL+ K+RIF+P G
Sbjct: 652 KAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNG 711
Query: 1502 RCLMGCLDEYRILEYGEIFVQVTEPR-----SSLHFGTTGNQTSIRKRIITGTVIVAKNP 1338
R +MGCLDE R LEYG++FVQ++ R S F G + + +I G V VAKNP
Sbjct: 712 RAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHL---VIEGNVTVAKNP 768
Query: 1337 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 1158
CLHPGDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP
Sbjct: 769 CLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPS 828
Query: 1157 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDN 978
PMDY P L+R VT EDIQE+F NYM+NDS+GII+ HT FAD + ARS
Sbjct: 829 RQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSP 888
Query: 977 CLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDH 798
CL+LA+LF++AVDFPKTGVPA IPS L +E+PDFMEK D+P+Y S +VIGKL+RAVKD
Sbjct: 889 CLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDI 948
Query: 797 ATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAE 618
A I SFT++VA + YD D+EV ++DY++ AF K+ YD L +++ YGI+ EAE
Sbjct: 949 APTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAE 1008
Query: 617 IVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRE-LEANEYDL---ASA 450
++SG+I +SK + E + V+SL++E R+WF+A RE ++N DL ASA
Sbjct: 1009 VLSGSIMRMSKSFTRRRD--AEAINLAVRSLRKEARTWFNA--REGADSNSDDLFAKASA 1064
Query: 449 WYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTRGSDQLGK 291
WY++TYH YWG Y E D H +SFPW VYDKL++IK N R ++ +
Sbjct: 1065 WYYVTYHHSYWGCYNEGMKRD----HYLSFPWCVYDKLMQIKENNLRRRERAAR 1114
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 929 bits (2402), Expect = 0.0
Identities = 527/1124 (46%), Positives = 699/1124 (62%), Gaps = 25/1124 (2%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQLDRSFLAR 3435
+T+++ +P AN++ LE E A +KQ HA VQ LA
Sbjct: 3 KTIQVYGVPSNVSANEIKEFLEKYTGEG--TIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 3434 KLCTTLP----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 3267
+ + ++A + D++ KPR + LHFG Q+S+ R+ VLW
Sbjct: 61 LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA-I 119
Query: 3266 DVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKIY 3087
+V +F ++K + L+ Y+L LS ++ + +L+IQ+ AP+IY
Sbjct: 120 NVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIY 179
Query: 3086 YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 2907
K+ S+ +FK D+QW+R DFT + SIG S+++CLEL G++ +
Sbjct: 180 EKDVSA--------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCEN 231
Query: 2906 FYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPALG 2727
F YK+ L LVP P+KILF++N LVQ G LS P L
Sbjct: 232 FARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLD 291
Query: 2726 REFFRLLEPKSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYADFNTY---- 2559
FFR ++P+ + I AL+++ Y L++ Y+ + + TY
Sbjct: 292 TNFFRWVDPQRIN-ISFIEHALEKLYY----------LEECCYEPVRWLHEQYRTYISKQ 340
Query: 2558 --------LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 2403
LD GL+ V RVQ+TP KVY GPEV+VSNRV+R + E ID+F+RVSF+DE+
Sbjct: 341 VAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENS 400
Query: 2402 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFA 2223
++ +T + +M N E + T +Y RILS KF+FLA SSSQLR++S WMFA
Sbjct: 401 EKIHSTVISPRMSN-EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFA 459
Query: 2222 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 2043
S +TA IR+ MG+F IRNVAK AAR+GQ FSSSK+TL V + E+E DI RD
Sbjct: 460 SRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDG 519
Query: 2042 DSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPS 1866
+YVFSDGIGKIS LA +A+ CGC + PSAFQIRYGGYKGVVA+DPTSS KLSLR S
Sbjct: 520 TTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKS 579
Query: 1865 MRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHK 1686
M K++SEN N+DVLSW+K+RPCFLNRQ+ITLLSTLGV+D FE Q+E +++LD IL
Sbjct: 580 MFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDP 639
Query: 1685 DMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPK 1506
A E L++MS GEN N++ ML CGY P EP+LSM+L FRAAKLLEL+ K RIFVP
Sbjct: 640 LRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 699
Query: 1505 GRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNP 1338
GR +MGCLDE R LEYGE+FVQ++ FG + G+ + I+ G V+VAKNP
Sbjct: 700 GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 759
Query: 1337 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 1158
CLHPGDVRIL AVD P LHH+VDCVVFPQKG RPHP+ECSGSDLDGD+YFVCWD LIPP
Sbjct: 760 CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819
Query: 1157 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDN 978
PMDY P L+ V IE+++E+F NY+ ND +GII+ HTVFAD + + A
Sbjct: 820 RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPP 879
Query: 977 CLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDH 798
C +LA+LF++A++FPKTGVPA+IP L +EYPDFMEK +KPTY S+ VIGKL+R VKD
Sbjct: 880 CKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 939
Query: 797 ATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAE 618
A + + SFT++VA ++YD D+EV ++DY+ AF K+ YD L S+M GIR E+E
Sbjct: 940 APHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESE 999
Query: 617 IVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEA---NEYDLASAW 447
I+SG+I +SK K D + L V+SL++E R+WF+ A + Y +ASAW
Sbjct: 1000 ILSGSIMKMSKSF-DKRKDAEAIALA-VRSLRKEARTWFNKMGSGTYAGADDVYAIASAW 1057
Query: 446 YHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 318
YH+TYHPYYWG Y E D H +SFPW VYDKL++IKR+K
Sbjct: 1058 YHVTYHPYYWGCYNEGMYHD----HFLSFPWCVYDKLIQIKRDK 1097
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 929 bits (2401), Expect = 0.0
Identities = 529/1116 (47%), Positives = 705/1116 (63%), Gaps = 16/1116 (1%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQLDRSFLAR 3435
+T++++ P A ++ T LE + K V + KI +Q N YA IVQ +S A
Sbjct: 3 KTIQVSRFPSNVHAEEVKTFLE-LYTGKETVYALKIRQQKNGGRAYA--IVQFTKSTDAE 59
Query: 3434 KLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 3270
+ S+ ++A + D+V KPR + LHFGCQVS+ ++ VLW +
Sbjct: 60 LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE-E 118
Query: 3269 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKI 3090
DV F ++KL L+ + YRL L + ++ + + + YL+IQ++ AP+I
Sbjct: 119 VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178
Query: 3089 YYKEP-SSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 2913
Y K+ SS + + +F D+QW+RTTDFT++ IG S+ +CLEL + +
Sbjct: 179 YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFR 238
Query: 2912 NSFYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPA 2733
+F YK+ L LVP PY+ILF++N LVQ G + PA
Sbjct: 239 ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298
Query: 2732 LGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSL----KKIIYDKKARRYADF 2568
L F+RL+ P + V I AL+++ Y + P K L K I KK
Sbjct: 299 LDANFYRLVNPCRIDKV-YIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357
Query: 2567 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 2388
+ LDDGL+ V RVQ+TP++VY GPE++VSNRV+R F + ID+F+R++F+DE+ ++ +
Sbjct: 358 S--LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHS 415
Query: 2387 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASNEQV 2208
TDL + + T++Y RILS +FEFLAFSSSQLRE+S WMFAS E +
Sbjct: 416 TDLLTR-----NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGL 470
Query: 2207 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 2028
TA IR WMG F IRNVAK AAR+GQ FSSS +TL V + E+E +D+ I+RD +YVF
Sbjct: 471 TAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVF 530
Query: 2027 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 1851
SDGIGKIS A+++A C + PSAFQIR GG+KGVVA+DPTSS KLSLR SM K++
Sbjct: 531 SDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYE 590
Query: 1850 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALE 1671
SEN +DVL+W+K++PCFLNRQ+ITLLSTLGV D FE Q+E +++L+ IL A E
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQE 650
Query: 1670 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 1491
L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLLEL+ K+RIFV GR +M
Sbjct: 651 ALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMM 710
Query: 1490 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRI 1311
GCLDE R L+YG++FVQV+ RS F I+ G V+VAKNPCLHPGDVR+
Sbjct: 711 GCLDETRTLDYGQVFVQVSGSRSEQRF------------IVQGKVVVAKNPCLHPGDVRV 758
Query: 1310 LRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYA 1131
L AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP PMDY+
Sbjct: 759 LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYS 818
Query: 1130 APPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFT 951
P L VTIE+++E+F NY++NDS+GII+ HTVFAD + A S C LA+LF+
Sbjct: 819 PAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFS 878
Query: 950 LAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISS 771
+AVDFPKTGVPA+IP +L +EYPDFMEK DKPTY S VIGKL+R VKD A I S
Sbjct: 879 IAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRS 938
Query: 770 FTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSL 591
T+E + YD D+EV Y+DY+D AF K+ YD L ++M YGI+ EAEI+SG I +
Sbjct: 939 LTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKM 998
Query: 590 SKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDL---ASAWYHITYHPYY 420
S+ +K D E + V+SL++E RSWF+ L++ DL ASAWYH+TYHP Y
Sbjct: 999 SRSF-TKQRDA-EAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSY 1056
Query: 419 WG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKT 315
WG Y E + + H +SFPW VYDKL+ IK+ T
Sbjct: 1057 WGLYNEGMNRN----HFLSFPWCVYDKLILIKKKVT 1088
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 929 bits (2400), Expect = 0.0
Identities = 501/1037 (48%), Positives = 674/1037 (64%), Gaps = 17/1037 (1%)
Frame = -1
Query: 3371 VSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYR 3192
+ +PR H+ L+FGCQ+S ++AVL + V +F +KK++ L+ Y+
Sbjct: 85 IVQPRTYVQHMDGVTLNFGCQISDKKFAVLGS--KVVSIKFGIGLKKIYFFLSYGSTDYK 142
Query: 3191 LVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQ 3012
L LS+ ++ + + + +L++Q+ AP+IY + S FFK D+Q
Sbjct: 143 LQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYKRLEDS-------CYSFFKETPDDQ 195
Query: 3011 WIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXSR- 2835
W+RTTDFT ++ IG S+S+CLE +G + SF+ YK+ + L +
Sbjct: 196 WVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKK 254
Query: 2834 --LVPSXXXXXXXXXPYKILFQVNALVQEGILSWPALGREFFRLLEPKSE-----EYVGR 2676
LVP PYKILF++++L+Q G AL FF+L++P+ E+
Sbjct: 255 LALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALE 314
Query: 2675 ILFALQEISYSGPTYTPEKSLKKIIYDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLF 2496
L+ L+E Y + E+ + Y K+ + + LDDGL+ V RV VTP KVY
Sbjct: 315 KLYYLKECCYDPVRWLTEQYDE---YLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFC 371
Query: 2495 GPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSX 2316
GPEV+VSNRV+R +SE ID+F+RVSF+DE+ ++ +TDL + G T +YLRILS
Sbjct: 372 GPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGVRTDIYLRILST 431
Query: 2315 XXXXXXXXXXKFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAAR 2136
KFEFLAFSSSQLR++S+WMFAS +TA IR WMG F IRNVAK AAR
Sbjct: 432 LRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAAR 491
Query: 2135 MGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYV 1956
+GQ F SS++TL V EVE D+ +Y+FSDGIGKIS A +AV CG Y
Sbjct: 492 LGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYT 551
Query: 1955 PSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIIT 1776
PS FQIRYGGYKGVVA+DP SS KLSLR SM K++S N +DVL W+K++PC+LNRQ++T
Sbjct: 552 PSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVT 611
Query: 1775 LLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPK 1596
LLSTLGV+D+ FE Q E +++LD IL A E L++MS GEN N++ ML CGY P
Sbjct: 612 LLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPD 671
Query: 1595 DEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVTEP---- 1428
EP+LSM+L FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++FVQ T
Sbjct: 672 AEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQ 731
Query: 1427 --RSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFP 1254
S F +G+ I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFP
Sbjct: 732 FYEESHPFNDSGSTNC--DFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFP 789
Query: 1253 QKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEF 1074
QKGKRPHPNECSGSDLDGD+YFVCWD L+PP PMDY P L+ VTIE+++E+
Sbjct: 790 QKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEY 849
Query: 1073 FANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLV 894
F NY++NDS+GII+ H VFAD + +MA SD C +LAQLF++AVDFPKTGVPA+IPS L
Sbjct: 850 FTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLR 909
Query: 893 PREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAY 714
P+EYPDFMEK DKPTY S++VIGKL++ VKD Q+ +I++FT +VA K+YD D+ V +
Sbjct: 910 PKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGF 969
Query: 713 KDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSLSK-FHGSKLSDVRELLLTE 537
+DYID AF K+ YD+ L ++M YGI+ EAEI+SG I SK F K +D +
Sbjct: 970 EDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDADA---IGVA 1026
Query: 536 VKSLQRETRSWFD--ADVRELEANEYDLASAWYHITYHPYYWGYGENDDSDYRNPHLISF 363
V+SL++E R+WF +D+ ++ A ASAWYH+TYH YWG+ + + H ISF
Sbjct: 1027 VRSLRKEARTWFKRRSDIDDMLAK----ASAWYHVTYHHTYWGF---YNEGLKRDHFISF 1079
Query: 362 PWTVYDKLLRIKRNKTR 312
PW +YD+L++IK+ K R
Sbjct: 1080 PWCIYDQLIQIKKAKAR 1096
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 927 bits (2397), Expect = 0.0
Identities = 537/1132 (47%), Positives = 716/1132 (63%), Gaps = 24/1132 (2%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKIL--KQTNPRHVYAHAIVQLDRSFL 3441
+T+++ P+G + + + LE L G V + K+ K+ PR AIVQ
Sbjct: 3 KTIQVFGFPVGVNTDDVKIFLER-LTGSGTVYAIKVRQPKRGGPR---VFAIVQFTSERH 58
Query: 3440 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 3279
AR L T+ A L ++A + +D+V KPR S I+ +++FGCQVS + LW
Sbjct: 59 AR-LIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLW 117
Query: 3278 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCA 3099
+ + V F + ++KL ++ YRL LS+ ++ + +S +LVIQV A
Sbjct: 118 SAHN-VCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGA 176
Query: 3098 PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 2919
PKI+ KE + + +F+ GSD QWIRTTDFT + IG ST+ CLEL
Sbjct: 177 PKIFEKE-DQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPD 235
Query: 2918 IKNSFYNYKDIRENLSL--HINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGIL 2745
+ +F NY + R + L + ++LVP P++ILF+VN LVQ L
Sbjct: 236 FRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACL 295
Query: 2744 SWPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARR 2580
PAL EF++LL PK + + LF L E Y + E+ KK+ KK
Sbjct: 296 PGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREE-YKKLNSSKKLPL 354
Query: 2579 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 2400
+ LDDGL+ ++RV VTP +VY GPEV+VSNRV+R +SEYI++F+R+SF+DED
Sbjct: 355 SPTIS--LDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLE 412
Query: 2399 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFAS 2220
++ + DL + + ++ TKLY RI S KFEFLAFSSSQLRE+S WMFA
Sbjct: 413 KIHSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470
Query: 2219 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 2040
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+
Sbjct: 471 RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDT 530
Query: 2039 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1863
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 531 RYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 590
Query: 1862 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 1683
KF+S N +DVL+W+K++PC+LNRQIITLLSTLGV+D FE Q+E ++RLD IL
Sbjct: 591 SKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPL 650
Query: 1682 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 1503
A E L +M+ GEN N++ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P G
Sbjct: 651 EAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGG 710
Query: 1502 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR-IITGTVIVAKNPCLHP 1326
R +MGCLDE R LEYG++ VQ + P T KR IITG V+VAKNPCLHP
Sbjct: 711 RSMMGCLDETRTLEYGQVVVQYSNP------------TMPGKRYIITGPVVVAKNPCLHP 758
Query: 1325 GDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDM 1146
GDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YF+CWD LIPP
Sbjct: 759 GDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSE 818
Query: 1145 PMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKL 966
PMDY P L+ VTIE+++E+FANY++NDS+GII+ HT FAD + A SD C++L
Sbjct: 819 PMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIEL 878
Query: 965 AQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQS 786
A+ F++AVDFPKTG+ A+IP L +EYPDFM+K DKPTY SK VIGKL+R VK+ A
Sbjct: 879 ARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAPPL 938
Query: 785 LTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSG 606
++I SFT +VA K+YD+D+EV +++YID AF K YD L ++M YGI+ EAEI+SG
Sbjct: 939 ISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSG 998
Query: 605 NIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDLASAWYHITYHP 426
I +SK +K D E + V++L++E SWF+ + + +E ASAWYH+TYH
Sbjct: 999 GIMRMSKSF-TKRRDA-ESIGRAVRALRKEALSWFNNAEDKNDFDESAKASAWYHVTYHS 1056
Query: 425 YYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIK------RNKTRGSDQLGK 291
YWG Y E + D H +SF W VYDKL+RIK R + +QLG+
Sbjct: 1057 SYWGVYNEGLNRD----HFLSFAWCVYDKLVRIKKANVGRRQRQEALEQLGR 1104
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 927 bits (2395), Expect = 0.0
Identities = 517/1092 (47%), Positives = 699/1092 (64%), Gaps = 19/1092 (1%)
Frame = -1
Query: 3530 GCVCSAKILKQTNPRHVYAHAIVQLDRSFLARKLCTTLP-----ASTLMQATVLPRDMVS 3366
G VC+ ++ + +A VQ + A K+ S+ ++A + D+V
Sbjct: 30 GTVCALEVKQSKGGSRAFAK--VQFVDNISADKIINLASKRLYFGSSYLKAREMETDLVQ 87
Query: 3365 KPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLV 3186
E H+ L+FGCQ+S +++AVL + ++V +F +KK F L+ Y+L
Sbjct: 88 L-WEYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKKFFFFLSSGSADYKLQ 144
Query: 3185 LSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWI 3006
LS+ ++ + + +L+IQ++ AP+IY + +S FFK D+QW+
Sbjct: 145 LSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWV 197
Query: 3005 RTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXSR--L 2832
RTTDF ++ IG S+S+CL+ G + SF++Y + N++L + L
Sbjct: 198 RTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSAL 256
Query: 2831 VPSXXXXXXXXXPYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEI 2652
VP+ PYKILF++++LVQ G + PAL FFRL++P+ V I AL+++
Sbjct: 257 VPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN-VACIEQALEKL 315
Query: 2651 SYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVD 2481
Y Y P + L + Y K + + LDDGL+ V RV VTP KVY GPEV+
Sbjct: 316 YYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVN 375
Query: 2480 VSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXX 2301
VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G T +Y RILS
Sbjct: 376 VSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGF 435
Query: 2300 XXXXXKFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCF 2121
KFEFLAFSSSQLR++S+WMFAS +TA IR WMG+F I+NVAK AAR+GQ F
Sbjct: 436 VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSF 495
Query: 2120 SSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQ 1941
SS +TL V E+E D+ + SYVFSDGIGKIS A +A CG + PSAFQ
Sbjct: 496 GSSTETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCGLQHTPSAFQ 553
Query: 1940 IRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTL 1761
IRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++PC+LNRQ++TLLSTL
Sbjct: 554 IRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTL 613
Query: 1760 GVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYL 1581
GV+D+ E Q+E +++LD IL A E L++MS GEN N++ ML CGY P EP+L
Sbjct: 614 GVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFL 673
Query: 1580 SMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSL 1416
SM+L FRA+KLL+L+ K+RIF+P GR +MGCLDE R LEYG++FVQ T E L
Sbjct: 674 SMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDL 733
Query: 1415 HFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRP 1236
H T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRP
Sbjct: 734 HPFNNSRSTNCNF-ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRP 792
Query: 1235 HPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYML 1056
HPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+ VTIE+++E+F NY++
Sbjct: 793 HPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIV 852
Query: 1055 NDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPD 876
NDS+GII+ H VFAD + +MA SD C KLA+L ++AVDFPKTGVPA+IP L P+EYPD
Sbjct: 853 NDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPPQLRPKEYPD 912
Query: 875 FMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYID 699
FM+K DK TYIS+RVIGKLYR VKD A Q+ + + FT++VA ++YD DLEV ++DYID
Sbjct: 913 FMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYID 972
Query: 698 AAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQR 519
AF K YD+ L ++M YGI+ EAEI+SG I SK + E + V++L++
Sbjct: 973 EAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRK 1030
Query: 518 ETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVY 348
E R+WF D+ ++ ASAWYH+TYHP YWG Y + + H ISFPW VY
Sbjct: 1031 EARTWFKRRNDIDDM----LPKASAWYHVTYHPTYWGCYNQG----LKRDHFISFPWCVY 1082
Query: 347 DKLLRIKRNKTR 312
D+L++IK+ K R
Sbjct: 1083 DQLIQIKKEKAR 1094
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 921 bits (2381), Expect = 0.0
Identities = 534/1113 (47%), Positives = 704/1113 (63%), Gaps = 16/1113 (1%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKIL--KQTNPRHVYAHAIVQLDRSFL 3441
+T+++ P G A ++ LE L G V + K+ K+ PR +AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58
Query: 3440 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 3276
R + T + ++A + +D+V KPR S I+ ++ FGCQVS ++ LW+
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 3275 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAP 3096
DV F ++KL + YRL LS+ ++ + +S +LVIQV AP
Sbjct: 119 AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 3095 KIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 2916
KI+ KE + I +F+ GSD QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236
Query: 2915 KNSFYNYKDIRENLSL--HINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILS 2742
+ +F NY + R + L + + LVP P++ILF++N LVQ LS
Sbjct: 237 RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296
Query: 2741 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 2577
PAL +F+RLL K + + LF L E Y P + KK I K +
Sbjct: 297 GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353
Query: 2576 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 2397
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED +
Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413
Query: 2396 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASN 2217
+ + DL + + ++ TKLY RI S KFEFLAFSSSQLRE+S WMFA
Sbjct: 414 VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471
Query: 2216 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 2037
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531
Query: 2036 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1860
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591
Query: 1859 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 1680
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL H
Sbjct: 592 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651
Query: 1679 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 1500
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR
Sbjct: 652 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711
Query: 1499 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 1320
+MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPGD
Sbjct: 712 SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPGD 760
Query: 1319 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 1140
VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ L+PP PM
Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 820
Query: 1139 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQ 960
DY P L+ VTIE+++E+FANY++NDS+GII+ HT FAD + A SD C++LA+
Sbjct: 821 DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAK 880
Query: 959 LFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLT 780
F+ AVDFPKTGV A IP L +EYPDFMEK DKPTY SK VIGKL+R VK+ A ++
Sbjct: 881 KFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 940
Query: 779 ISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 600
I SFT +VA K+YD+D+EV +++Y+D AF K YD L ++M YGI+ EAEI+SG I
Sbjct: 941 IKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1000
Query: 599 FSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDLASAWYHITYHPYY 420
+SK +K D E + V++L++ET S F+A E E NE ASAWYH+TYH Y
Sbjct: 1001 MRMSKSF-TKRRDA-ESIGRAVRALRKETLSLFNAS--EEEENESAKASAWYHVTYHSSY 1056
Query: 419 WG-YGENDDSDYRNPHLISFPWTVYDKLLRIKR 324
WG Y E + D H +SF W VYDKL+RIK+
Sbjct: 1057 WGLYNEGLNRD----HFLSFAWCVYDKLVRIKK 1085
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 921 bits (2380), Expect = 0.0
Identities = 529/1116 (47%), Positives = 701/1116 (62%), Gaps = 17/1116 (1%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQLDRSFLAR 3435
+T+++ P G A + LE E G V + K+ + YA I+Q A
Sbjct: 3 KTIQLHGFPSGQTAENIKEFLEKHTGE-GSVFALKLRPAKSGGRFYA--IIQFQSISQAE 59
Query: 3434 KLCTTLPASTLMQATVL----PRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 3267
K+ + A + L D+V KPR + LH GCQV+ ++++VLW +
Sbjct: 60 KIISLANARLWYGRSYLNARPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGT-A 118
Query: 3266 DVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKIY 3087
+V +F ++ L L R YRL LS+ ++ + + YLVIQ+Y P+IY
Sbjct: 119 EVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIY 178
Query: 3086 YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 2907
+E S G+G +F+ D W+RTTDFT IG S+S+CL L + + +
Sbjct: 179 QQEVCSSGGNGYEDMNYFRDPDD--WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEEN 236
Query: 2906 FYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPALG 2727
F YK L LVP PY ILF++N LVQ+G LS P L
Sbjct: 237 FAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLD 296
Query: 2726 REFFRLLEPKSEEYVGR--ILFALQEIS-YSGPTYTP----EKSLKKIIYDKKARRYADF 2568
F+RL++P+ + R I FAL ++S Y P + +K + KK + A
Sbjct: 297 NNFYRLVDPRR---ISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALI 353
Query: 2567 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 2388
+ LD GL+ V RVQ+TP+KVY GPEV+VSNR++RQ+S ID+F+RVSF+DE+ +L++
Sbjct: 354 S--LDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYS 411
Query: 2387 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASNEQV 2208
TDL P + T++Y R+LS KFEFLAFSSSQLRE+SLWMFA ++
Sbjct: 412 TDLS---PRTSTRKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDED 468
Query: 2207 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 2028
+A+TIRA MG+F IRNVAK AAR+GQ F SS +TL V +E+E D+T+ YVF
Sbjct: 469 SADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVF 528
Query: 2027 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 1851
SDGIGKIS AE +A CG + PSAFQIRYGGYKGVVA+DPTSS KLSLR SM K++
Sbjct: 529 SDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYE 588
Query: 1850 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALE 1671
SEN +DVL+ +K++PCFLNRQ+ITLLSTL V+D F Q+ + +L+ IL A E
Sbjct: 589 SENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEE 648
Query: 1670 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 1491
L +MS GE+ NV+ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P GR +M
Sbjct: 649 ALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMM 708
Query: 1490 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR-IITGTVIVAKNPCLHPGDVR 1314
GCLDE R LEYG++FVQ + R F +S+ II G V+VAKNPCLHPGDVR
Sbjct: 709 GCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSCFIIEGKVVVAKNPCLHPGDVR 768
Query: 1313 ILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDY 1134
+LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIPP PMDY
Sbjct: 769 VLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDY 828
Query: 1133 AAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLF 954
P I +++ VTIE+++E+F NY++NDS+GII+ HTVFADS + A S CL+LA+LF
Sbjct: 829 TPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLF 888
Query: 953 TLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTIS 774
++AVDFPKTGVPA+IP +L +EYPDFMEK DK TYIS VIG+L+R VKD A +I+
Sbjct: 889 SIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIA 948
Query: 773 SFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFS 594
SFT++VA K YD D+EV ++DY++ AF K YD L +++ YGI+ EAEI+SG+I +
Sbjct: 949 SFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMT 1008
Query: 593 LSKFHGSKLSDVRELLLTEVKSLQRETRSWF---DADVRELEANEYDLASAWYHITYHPY 423
LSK +K D + + VKSL++E R+WF D + + + Y ASAWYH+TYHP
Sbjct: 1009 LSKSF-TKRRDA-DAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPN 1066
Query: 422 YWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 318
Y+G Y E H ISFPW V+DKL IK+ K
Sbjct: 1067 YFGLYNEG----MNRAHFISFPWCVFDKLGHIKKEK 1098
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 921 bits (2380), Expect = 0.0
Identities = 533/1114 (47%), Positives = 706/1114 (63%), Gaps = 17/1114 (1%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKIL--KQTNPRHVYAHAIVQLDRSFL 3441
+T+++ P G A ++ LE L G V + K+ K+ PR AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VFAIVQFTNEIY 58
Query: 3440 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 3279
AR++ T L + A + +D+V KPR S +I+ +++FGCQVS LW
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118
Query: 3278 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCA 3099
+ DV F ++KL + YRL LS+ ++ + +S +LVIQV A
Sbjct: 119 SAQ-DVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177
Query: 3098 PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 2919
PKI+ KE + + +F+ GSD QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 PKIFEKE-DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236
Query: 2918 IKNSFYNYKDIRENLSL--HINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGIL 2745
+ +F NY + R + L + ++LVP P++ILF++N LVQ L
Sbjct: 237 FRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACL 296
Query: 2744 SWPALGREFFRLLEPKSEEYVGRILF--ALQEISYSGPT-YTPEKSLKKIIYD--KKARR 2580
PAL + ++LL PK + R L L+++ Y G + Y P + L+K + K +
Sbjct: 297 PGPALDLDVYQLLNPKK---IDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKL 353
Query: 2579 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 2400
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED
Sbjct: 354 PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413
Query: 2399 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFAS 2220
++ + DL + + ++ TKLY RI S KFEFLAFSSSQLRE+S WMFA
Sbjct: 414 KVRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 471
Query: 2219 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 2040
E +T+ IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 IEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 531
Query: 2039 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1863
YVFSDGIGKIS A +A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 RYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 591
Query: 1862 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKD 1683
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL
Sbjct: 592 SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPL 651
Query: 1682 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 1503
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ G
Sbjct: 652 EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 711
Query: 1502 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPG 1323
R +MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPG
Sbjct: 712 RSMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPG 760
Query: 1322 DVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMP 1143
DVR+L AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP P
Sbjct: 761 DVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEP 820
Query: 1142 MDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLA 963
MDY P L+ VTIE+++E+FANY++NDS+GII+ HT FAD + A SD C++LA
Sbjct: 821 MDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 880
Query: 962 QLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSL 783
+ F++AVDFPKTGV A+IP L +EYPDFMEK DKPTY SK VIGKL+R VK+ A +
Sbjct: 881 RKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 940
Query: 782 TISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGN 603
+I SFT +VA K+YD+D+EV +++Y+D AF K YD L ++M YGI+ EAEI+SG
Sbjct: 941 SIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGG 1000
Query: 602 IFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDLASAWYHITYHPY 423
I +SK +K D E + V++L++ET S F+A E NE ASAWYHITYH
Sbjct: 1001 IMRMSKSF-TKRRDA-ESIGRAVRALRKETLSLFNATEEE---NESAKASAWYHITYHSS 1055
Query: 422 YWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKR 324
YWG Y E + D H +SF W VYDKL+RIK+
Sbjct: 1056 YWGLYNEGLNRD----HFLSFAWCVYDKLVRIKK 1085
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 919 bits (2376), Expect = 0.0
Identities = 526/1124 (46%), Positives = 717/1124 (63%), Gaps = 25/1124 (2%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQ---LDRSF 3444
+T++++ P A + LEG +G V + KI + T ++AIVQ ++ +
Sbjct: 3 KTIQLSGFPSHVSAESVKEFLEGHTG-RGTVYAIKI-RPTKNGGSRSYAIVQFMTVETAE 60
Query: 3443 LARKLCTTLP--ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 3270
L +L + + A V+ RD+V KPR + + LHFGCQ+S +++ LW
Sbjct: 61 LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV- 119
Query: 3269 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKI 3090
+V +F +++L LT + YRL L + +V + + YL+IQ+ AP++
Sbjct: 120 GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179
Query: 3089 YYKEP--SSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 2916
Y KE S D+ + + +FK D+QW+R TDFT + IG+S+++ LEL G +
Sbjct: 180 YEKEVRISFDILENP-LFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238
Query: 2915 KNSFYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWP 2736
+ +F YK+ E L LVP P++ +F++N L+Q G LS P
Sbjct: 239 RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298
Query: 2735 ALGREFFRLLEPKSEEYVGRI------LFALQEISYSGPTYTPEKSLKKIIYDKKARRYA 2574
L +F+RL++P+ V I LF L+E Y + E+ K + + + A
Sbjct: 299 TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358
Query: 2573 DFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQL 2394
LD GL+ V RVQVTP+KVY GPE++VSNRV+R++ +YID F+RVSF+DE+ +L
Sbjct: 359 ---IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKL 415
Query: 2393 FATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASN 2217
F+TDL + N E + T +Y RILS KFEFLAFSSSQLR++SLWMFA+
Sbjct: 416 FSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAV 475
Query: 2216 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 2037
+ +A+TIR W+G+F SIRNVAK AAR+GQ F SS +TL V ESE E +DI IER +
Sbjct: 476 DGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVK 535
Query: 2036 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1860
YVFSDGIGKIS A+ +A CG D VPSAFQIRY GYKGVVA+DPTSS KLSLR SM
Sbjct: 536 YVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMW 595
Query: 1859 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 1680
K++SE +DVL+++K + C+LNRQ+ITLLSTLGV D FE Q+E + +L+ IL+
Sbjct: 596 KYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLR 655
Query: 1679 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 1500
A E L +MS GE N++ +L CGY P EP+LSM+L AFRA+KL EL+ K RI +P GR
Sbjct: 656 AREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGR 715
Query: 1499 CLMGCLDEYRILEYGEIFVQVT----EP--RSSLHFGTTGNQTSIRKRIITGTVIVAKNP 1338
+MGCLDE R LEYGE+FVQ + P S G TG S + I+ G V+VAKNP
Sbjct: 716 AMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTG---SGQNYIVVGRVVVAKNP 772
Query: 1337 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 1158
CLHPGDVR+LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIP
Sbjct: 773 CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQ 832
Query: 1157 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDN 978
PMDY+ P L+ V IE++QE+F NY++NDS+GII+ HT FAD + A S +
Sbjct: 833 KQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPS 892
Query: 977 CLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDH 798
C++LA+LF++AVDFPKTGVPA IP +L +EYPDFMEK +KPTY S+ VIGKL+R VKD
Sbjct: 893 CIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDI 952
Query: 797 ATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAE 618
A ++ FTKEVA ++YD D+E ++DYID AF K+ YD L +++ YGI+ EAE
Sbjct: 953 APNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAE 1012
Query: 617 IVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEA---NEYDLASAW 447
I+ G+I +SK +K D + + V++L++E R+WF+ L++ + Y ASAW
Sbjct: 1013 IIGGSIMRMSKSF-TKRRDAESINMA-VRALRKEARTWFNEKGSSLDSAADDVYAKASAW 1070
Query: 446 YHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 318
Y++TYH YWG Y E + D H +SFPW VYDKL++IKR+K
Sbjct: 1071 YYVTYHHSYWGCYNEGMNRD----HYLSFPWCVYDKLVQIKRSK 1110
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 919 bits (2376), Expect = 0.0
Identities = 515/1122 (45%), Positives = 705/1122 (62%), Gaps = 21/1122 (1%)
Frame = -1
Query: 3617 SRTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKILKQTNPRHVYAHAIVQLDRSFLA 3438
S+TVK++ P T A + LE G A +++ +AIVQ + A
Sbjct: 2 SKTVKVSGFPSSTTAGAVQVFLES--HTGGGTVEALKIREIRTGGARKYAIVQFTTTRAA 59
Query: 3437 RKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTC 3273
++ + + + A + RD++ +PR + + LHFG Q S +++ +W+
Sbjct: 60 EQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS- 118
Query: 3272 DSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPK 3093
++V F ++KL L+ Y+L L F ++ + + YL+IQ+Y AP+
Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178
Query: 3092 IYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 2916
IY ++ PSS + +F+ D QW+RTTDFT + IG+S+S+CLEL + +
Sbjct: 179 IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238
Query: 2915 KNSFYNYKDIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWP 2736
+F+ YK+ L LVP PY ILF+VN LVQ G L+
Sbjct: 239 NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298
Query: 2735 ALGREFFRLLEP-----KSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYAD 2571
L F+RL++P + EY L+ L+E Y + E+ K + R
Sbjct: 299 MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV- 357
Query: 2570 FNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLF 2391
LD GL+ V++VQ+TP KV+ GPEV+VSNRV+RQ+ E ID+F+RVSF+DE+ ++
Sbjct: 358 --LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIH 415
Query: 2390 ATDLCQKMPN-GEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASNE 2214
+TD+ + + E + T +Y RILS KFEFLAFSSSQLRE+S WMFAS
Sbjct: 416 STDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRL 475
Query: 2213 QVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSY 2034
+TA IRAWMG+F IRNVA+ AAR+GQ F SS +TL V E+E DI + R Y
Sbjct: 476 GLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRY 535
Query: 2033 VFSDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRK 1857
+FSDGIGKIS A ++A+ CGC + PSAFQIRY GYKGVVA+DPTSS KLSLR SM K
Sbjct: 536 LFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFK 595
Query: 1856 FDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMA 1677
++SEN +DVL+ +K++PCFLNRQ+ITLLSTLGV D FE Q+E +++LD +L A
Sbjct: 596 YESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRA 655
Query: 1676 LEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRC 1497
E L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLLEL+ K RIF+P GR
Sbjct: 656 QEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 715
Query: 1496 LMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR----IITGTVIVAKNPCLH 1329
+MGCLDE R LE+G++FV+ + R + ++ + S R R +I G+V+VAKNPCLH
Sbjct: 716 MMGCLDETRTLEHGQVFVKFSGSRFRNLYDSS-DMFSERGRGQCYLIKGSVVVAKNPCLH 774
Query: 1328 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 1149
PGD+RIL+AVD P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP
Sbjct: 775 PGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI 834
Query: 1148 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLK 969
PMDY P + L+ VTIE+++E+F NY++NDS+G+I+ HT AD + A S+ C++
Sbjct: 835 SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894
Query: 968 LAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQ 789
LA+ F++AVDFPKTGVPA+IPS+L REYPDFMEK DKP+Y S+ VIGKL+R VKD A +
Sbjct: 895 LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954
Query: 788 SLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVS 609
+ +I SFT +VA + YD D+EV ++DYID AF K+ YD L ++M YGI+ EAE++S
Sbjct: 955 TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014
Query: 608 GNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDL---ASAWYHI 438
G+ +SK K E + V+SL++E RSWF+ L++ D+ ASAWYH+
Sbjct: 1015 GSFMKMSKSFTKKRD--AEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHV 1072
Query: 437 TYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKT 315
TYH YWG Y E + D H +SFPW VYDKL++IKR +
Sbjct: 1073 TYHHNYWGCYNEGMNRD----HFLSFPWCVYDKLIQIKRRNS 1110
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 918 bits (2373), Expect = 0.0
Identities = 533/1113 (47%), Positives = 703/1113 (63%), Gaps = 16/1113 (1%)
Frame = -1
Query: 3614 RTVKITHIPLGTDANQLTTLLEGILQEKGCVCSAKIL--KQTNPRHVYAHAIVQLDRSFL 3441
+T+++ P G A ++ LE L G V + K+ K+ PR +AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58
Query: 3440 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 3276
R + T + ++A + +D+V KPR S I+ ++ FGCQVS ++ LW+
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 3275 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAP 3096
DV F ++KL + YRL LS+ ++ + +S +LVIQV AP
Sbjct: 119 AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 3095 KIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 2916
KI+ KE + I +F+ GSD QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236
Query: 2915 KNSFYNYKDIRENLSL--HINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILS 2742
+ +F NY + R + L + + LVP P++ILF++N LVQ LS
Sbjct: 237 RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296
Query: 2741 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 2577
PAL +F+RLL K + + LF L E Y P + KK I K +
Sbjct: 297 GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353
Query: 2576 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 2397
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED +
Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413
Query: 2396 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASN 2217
+ + DL + + ++ TKLY RI S KFEFLAFSSSQLRE+S WMFA
Sbjct: 414 VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471
Query: 2216 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 2037
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531
Query: 2036 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1860
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591
Query: 1859 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDM 1680
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL H
Sbjct: 592 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651
Query: 1679 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 1500
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR
Sbjct: 652 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711
Query: 1499 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 1320
+MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLH GD
Sbjct: 712 SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHSGD 760
Query: 1319 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 1140
VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ L+PP PM
Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 820
Query: 1139 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQ 960
DY P L+ VTIE+++E+FANY++NDS+GII+ HT FAD + A SD C++LA+
Sbjct: 821 DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAK 880
Query: 959 LFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLT 780
F+ AVDFPKTGV A IP L +EYPDFMEK DKPTY SK VIGKL+R VK+ A ++
Sbjct: 881 KFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 940
Query: 779 ISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 600
I SFT +VA K+YD+D+EV +++Y+D AF K YD L ++M YGI+ EAEI+SG I
Sbjct: 941 IKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1000
Query: 599 FSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDLASAWYHITYHPYY 420
+SK +K D E + V++L++ET S F+A E E NE ASAWYH+TYH Y
Sbjct: 1001 MRMSKSF-TKRRDA-ESIGRAVRALRKETLSLFNAS--EEEENESAKASAWYHVTYHSSY 1056
Query: 419 WG-YGENDDSDYRNPHLISFPWTVYDKLLRIKR 324
WG Y E + D H +SF W VYDKL+RIK+
Sbjct: 1057 WGLYNEGLNRD----HFLSFAWCVYDKLVRIKK 1085
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 917 bits (2371), Expect = 0.0
Identities = 498/1054 (47%), Positives = 673/1054 (63%), Gaps = 24/1054 (2%)
Frame = -1
Query: 3401 MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFI 3222
++A + D+V +PR H+ L+FGCQ+S ++AVL + DV +F +KK++
Sbjct: 76 LKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS--KDVSIKFGIGLKKIYF 132
Query: 3221 ELTDRGISYRLVLSFGSVRYMYRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIA 3042
L+ Y+L LS+ ++ + + +L++Q++ AP+IY + S
Sbjct: 133 FLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEDS-------CY 185
Query: 3041 EFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHI 2862
FFK D+QW+RTTDFT ++ IG S+S+CLE +G + SF+ YK+ L
Sbjct: 186 SFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQT 244
Query: 2861 NXXXXXXSRL--VPSXXXXXXXXXPYKILFQVNALVQEGILSWPALGREFFRLLEPKSEE 2688
+L VP PYKILF++++L+Q G AL FF+L++P+
Sbjct: 245 GFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRN 304
Query: 2687 YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYADFNTYL-------------DDG 2547
+ I AL+++ Y LK+ YD ++ YL DDG
Sbjct: 305 -IACIEHALEKLYY----------LKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDG 353
Query: 2546 LMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKM 2367
L+ V RV VTP KVY GPEV+VSNRV+R +SE I++F+RVSF+DE+ ++ +TDL +
Sbjct: 354 LVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRA 413
Query: 2366 PNGEKKYTKLYLRILSXXXXXXXXXXXKFEFLAFSSSQLRESSLWMFASNEQVTAETIRA 2187
G T +Y RILS +FEFLAFSSSQLR++S+WMFAS +TA IR
Sbjct: 414 STGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRT 473
Query: 2186 WMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKI 2007
WMG+F IRNVAK AAR+GQ F SS++TL V EVE D+ +Y+FSDGIGKI
Sbjct: 474 WMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKI 533
Query: 2006 SVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDV 1827
S A + + CG Y PS+FQIRYGGYKGVVA+DP SS KLSLR SM K++S N +DV
Sbjct: 534 SADFAHRVTIKCGLQYTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDV 593
Query: 1826 LSWTKFRPCFLNRQIITLLSTLGVRDERFENLQQEDINRLDLILDHKDMALEVLQIMSGG 1647
L W+K++PC+LNRQ++TLLSTLGV D+ E Q E +++LD IL A E L++MS G
Sbjct: 594 LGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPG 653
Query: 1646 ENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRI 1467
EN N++ ML CGY P EP+LSM+L FRA+KLL+L+ + RIF+P GR +MGCLDE R
Sbjct: 654 ENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRT 713
Query: 1466 LEYGEIFVQVTEP------RSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILR 1305
LEYG++FVQ + S F +G+ I+ G V+VAKNPCLHPGD+R+LR
Sbjct: 714 LEYGQVFVQFSGAGRRQFFEESHPFNDSGSANC--DFILKGNVVVAKNPCLHPGDIRVLR 771
Query: 1304 AVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAP 1125
AVD P LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD LIPP MDY
Sbjct: 772 AVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPA 831
Query: 1124 PQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLA 945
P L+ VTIE+++E+F NY++NDS+GII+ H VFAD + +MA SD C +LAQLF++A
Sbjct: 832 PTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIA 891
Query: 944 VDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISSFT 765
VDFPKTGVPA+IPS L P+EYPDFMEK DKPTY S++VIGKL++ VK+ Q+ +I++FT
Sbjct: 892 VDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFT 951
Query: 764 KEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSLSK 585
++VA K+YD D+ V ++DYID AF K+ YD+ L ++M YGI+ EAEI+SG I SK
Sbjct: 952 RDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASK 1011
Query: 584 FHGSKLSDVRELLLTEVKSLQRETRSWFD--ADVRELEANEYDLASAWYHITYHPYYWG- 414
+ E + V+ L++E R+WF +D+ ++ A ASAWYH+TYH YWG
Sbjct: 1012 TFDRRKD--AEAIGVAVRCLRKEARAWFKRRSDIDDMLAK----ASAWYHVTYHHTYWGL 1065
Query: 413 YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTR 312
Y E + H ISFPW VYD+L++IK+ K R
Sbjct: 1066 YNEG----LKRDHFISFPWCVYDQLIQIKKAKAR 1095