BLASTX nr result
ID: Ephedra28_contig00011521
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00011521
(475 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK22906.1| unknown [Picea sitchensis] 97 2e-18
ref|XP_006858189.1| hypothetical protein AMTR_s00062p00164830 [A... 91 1e-16
ref|XP_004968049.1| PREDICTED: chloroplastic group IIB intron sp... 90 3e-16
ref|NP_001104963.1| chloroplastic group IIB intron splicing faci... 88 1e-15
pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Fa... 88 1e-15
ref|NP_001239948.1| uncharacterized protein LOC100808506 [Glycin... 88 1e-15
gb|ACF83436.1| unknown [Zea mays] gi|413947310|gb|AFW79959.1| ch... 88 1e-15
gb|EPS60443.1| hypothetical protein M569_14357, partial [Genlise... 88 1e-15
ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron sp... 88 1e-15
ref|XP_002305823.1| peptidyl-tRNA hydrolase family protein [Popu... 87 2e-15
ref|XP_006580163.1| PREDICTED: peptidyl-tRNA hydrolase, mitochon... 87 3e-15
ref|XP_003524957.1| PREDICTED: peptidyl-tRNA hydrolase, mitochon... 87 3e-15
ref|XP_002457428.1| hypothetical protein SORBIDRAFT_03g007130 [S... 87 3e-15
pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron... 86 4e-15
ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus c... 86 4e-15
ref|XP_004159345.1| PREDICTED: peptidyl-tRNA hydrolase, mitochon... 86 5e-15
ref|XP_004144076.1| PREDICTED: peptidyl-tRNA hydrolase, mitochon... 86 5e-15
ref|XP_003565295.1| PREDICTED: chloroplastic group IIB intron sp... 86 5e-15
ref|XP_003630435.1| Chloroplastic group IIB intron splicing faci... 86 5e-15
gb|ESW31422.1| hypothetical protein PHAVU_002G237100g [Phaseolus... 85 9e-15
>gb|ABK22906.1| unknown [Picea sitchensis]
Length = 246
Score = 97.1 bits (240), Expect = 2e-18
Identities = 42/90 (46%), Positives = 68/90 (75%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H GV VI +G ++FPRL IGIG P +MD++AYVLQ+F++ ++EK+N S + G
Sbjct: 157 GHGLHNGVKSVINHLKGNRNFPRLCIGIGNPPGSMDSKAYVLQQFSTMEREKMNISLQEG 216
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ R+L++EGFS+ ++ FN+RQ+Y++ +V
Sbjct: 217 VDATRLLISEGFSQSIDGFNKRQKYKYHKV 246
>ref|XP_006858189.1| hypothetical protein AMTR_s00062p00164830 [Amborella trichopoda]
gi|548862292|gb|ERN19656.1| hypothetical protein
AMTR_s00062p00164830 [Amborella trichopoda]
Length = 240
Score = 91.3 bits (225), Expect = 1e-16
Identities = 38/90 (42%), Positives = 64/90 (71%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ V+++ + + FPRL IGIG P TMD RAY+LQ+F++ ++E++N++ + G
Sbjct: 151 GHGYHNGMKSVMDQLDNSREFPRLSIGIGNHPGTMDMRAYLLQKFSAEEREQINAALKQG 210
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
+EG+R L+ +GF + FN RQ+Y++ +V
Sbjct: 211 VEGVRSLVFKGFDDSINRFNLRQKYKYHKV 240
>ref|XP_004968049.1| PREDICTED: chloroplastic group IIB intron splicing facilitator
CRS2, chloroplastic-like isoform X1 [Setaria italica]
Length = 256
Score = 90.1 bits (222), Expect = 3e-16
Identities = 40/90 (44%), Positives = 63/90 (70%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ +VIE +GR+ FPRL IGIG P MD RA++LQ+F+S ++ +++++ E G
Sbjct: 167 GHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDTRAFLLQKFSSEERVQIDTALEQG 226
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +R L+ +GFS +E FN Q+Y+ RV
Sbjct: 227 VDAVRTLVLKGFSGSIERFNLVQKYKFHRV 256
>ref|NP_001104963.1| chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic precursor [Zea mays]
gi|75312019|sp|Q9M5P4.1|CRS2_MAIZE RecName:
Full=Chloroplastic group IIB intron splicing facilitator
CRS2, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 2; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 2; Flags: Precursor
gi|6752919|gb|AAF27939.1|AF225708_1 CRS2 [Zea mays]
Length = 256
Score = 88.2 bits (217), Expect = 1e-15
Identities = 40/90 (44%), Positives = 62/90 (68%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ +VIE +GR+ FPRL IGIG P MD RA++LQ+F+S ++ +++++ E G
Sbjct: 167 GHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQG 226
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +R L+ +GFS E FN Q+Y+ RV
Sbjct: 227 VDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256
>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2
Length = 212
Score = 88.2 bits (217), Expect = 1e-15
Identities = 40/90 (44%), Positives = 62/90 (68%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ +VIE +GR+ FPRL IGIG P MD RA++LQ+F+S ++ +++++ E G
Sbjct: 123 GHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQG 182
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +R L+ +GFS E FN Q+Y+ RV
Sbjct: 183 VDAVRTLVLKGFSGSTERFNLVQKYKFHRV 212
>ref|NP_001239948.1| uncharacterized protein LOC100808506 [Glycine max]
gi|571469106|ref|XP_006584596.1| PREDICTED:
uncharacterized protein LOC100808506 isoform X1 [Glycine
max] gi|255645293|gb|ACU23143.1| unknown [Glycine max]
Length = 218
Score = 88.2 bits (217), Expect = 1e-15
Identities = 35/90 (38%), Positives = 62/90 (68%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH HKG+ VI F G + FPRL IGIG P MD +A++LQ+F + +++++ + + G
Sbjct: 123 GHGSHKGLKSVIYNFRGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEALQEG 182
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +++LL++G + + FN+ Q+Y+H+RV
Sbjct: 183 IDALKLLLSKGLTESAKRFNKEQKYKHLRV 212
>gb|ACF83436.1| unknown [Zea mays] gi|413947310|gb|AFW79959.1| chloroplast RNA
splicing2 [Zea mays]
Length = 256
Score = 88.2 bits (217), Expect = 1e-15
Identities = 40/90 (44%), Positives = 62/90 (68%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ +VIE +GR+ FPRL IGIG P MD RA++LQ+F+S ++ +++++ E G
Sbjct: 167 GHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQG 226
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +R L+ +GFS E FN Q+Y+ RV
Sbjct: 227 VDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256
>gb|EPS60443.1| hypothetical protein M569_14357, partial [Genlisea aurea]
Length = 250
Score = 87.8 bits (216), Expect = 1e-15
Identities = 36/87 (41%), Positives = 62/87 (71%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H GV +V+E EGR+SFPR IG+G P TMD +A++LQ+F+ +++++++ + E G
Sbjct: 155 GHGHHNGVKNVMEHLEGRRSFPRFCIGVGNPPGTMDMKAFLLQKFSPTERQQIDGALEQG 214
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQH 263
++ +R L+ EGF ++ FN Q+Y++
Sbjct: 215 VDALRTLVLEGFGPRVNRFNLGQKYKY 241
>ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron splicing facilitator
CRS2-B, chloroplastic-like [Cucumis sativus]
gi|449519774|ref|XP_004166909.1| PREDICTED:
chloroplastic group IIB intron splicing facilitator
CRS2-B, chloroplastic-like [Cucumis sativus]
Length = 249
Score = 87.8 bits (216), Expect = 1e-15
Identities = 38/90 (42%), Positives = 63/90 (70%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H GV V+ +GR+ FPRL IGIG P TMD +A++LQ+F+S ++++++++ E G
Sbjct: 160 GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQG 219
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
+E +R L GFS+++ FN Q+Y++ +V
Sbjct: 220 VEAVRTLALNGFSQRVNRFNLSQKYKYHKV 249
>ref|XP_002305823.1| peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
gi|222848787|gb|EEE86334.1| peptidyl-tRNA hydrolase
family protein [Populus trichocarpa]
Length = 244
Score = 87.0 bits (214), Expect = 2e-15
Identities = 38/90 (42%), Positives = 63/90 (70%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H GV V++ +G + FPRL IGIG P TMD +A++LQ+F+ +++E++++S E G
Sbjct: 155 GHGHHNGVKSVMDHLDGCREFPRLCIGIGNPPGTMDMKAFLLQKFSPTEREQIDASLEQG 214
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
+E +R L+ GF+ K+ FN Q+Y++ +V
Sbjct: 215 VEAMRTLILGGFTNKITRFNLGQKYKYHKV 244
>ref|XP_006580163.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X2
[Glycine max]
Length = 177
Score = 86.7 bits (213), Expect = 3e-15
Identities = 35/90 (38%), Positives = 63/90 (70%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH HKG+ VI F+G + FPRL IGIG P MD +A++LQ+F + +++++ + + G
Sbjct: 83 GHGSHKGLKSVIYHFKGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEALQEG 142
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +++LL++G + + FN+ Q+Y+H+RV
Sbjct: 143 VDALKLLLSKGLAVSAKRFNKEQKYKHLRV 172
>ref|XP_003524957.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1
[Glycine max]
Length = 217
Score = 86.7 bits (213), Expect = 3e-15
Identities = 35/90 (38%), Positives = 63/90 (70%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH HKG+ VI F+G + FPRL IGIG P MD +A++LQ+F + +++++ + + G
Sbjct: 123 GHGSHKGLKSVIYHFKGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEALQEG 182
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +++LL++G + + FN+ Q+Y+H+RV
Sbjct: 183 VDALKLLLSKGLAVSAKRFNKEQKYKHLRV 212
>ref|XP_002457428.1| hypothetical protein SORBIDRAFT_03g007130 [Sorghum bicolor]
gi|241929403|gb|EES02548.1| hypothetical protein
SORBIDRAFT_03g007130 [Sorghum bicolor]
Length = 256
Score = 86.7 bits (213), Expect = 3e-15
Identities = 39/90 (43%), Positives = 61/90 (67%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ +VIE +GR+ FPRL IGIG P MD RA++LQ+F+S ++ ++++S E G
Sbjct: 167 GHGRHNGLQNVIENLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDASLEQG 226
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +R L+ +GF E FN Q+Y+ +V
Sbjct: 227 VDAVRTLVLKGFCGSTERFNLVQKYKFHKV 256
>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing
Factor Crs2
Length = 202
Score = 86.3 bits (212), Expect = 4e-15
Identities = 38/87 (43%), Positives = 60/87 (68%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ +VIE +GR+ FPRL IGIG P MD RA++LQ+F+S ++ +++++ E G
Sbjct: 111 GHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQG 170
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQH 263
++ +R L+ +GFS E FN Q+ +H
Sbjct: 171 VDAVRTLVLKGFSGSTERFNLVQKLEH 197
>ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]
gi|223544111|gb|EEF45636.1| peptidyl-tRNA hydrolase,
putative [Ricinus communis]
Length = 253
Score = 86.3 bits (212), Expect = 4e-15
Identities = 37/90 (41%), Positives = 63/90 (70%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H GV V+E +G + FPRL IGIG P TMD RA++LQ+F+S+++E+++++ G
Sbjct: 164 GHGHHNGVKSVMEHLDGCREFPRLCIGIGNPPGTMDMRAFLLQKFSSTEREQIDAALGQG 223
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +R L+ GF++ + FN Q+Y++ +V
Sbjct: 224 IDAVRTLVLSGFNQNITRFNLGQKYKYHKV 253
>ref|XP_004159345.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis
sativus]
Length = 218
Score = 85.9 bits (211), Expect = 5e-15
Identities = 36/90 (40%), Positives = 62/90 (68%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH HKG+ VI F G + F RL IGIG+ P MD++A++LQ+F ++ QE+++++ + G
Sbjct: 124 GHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQERIDTALQEG 183
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
+ +++LL+ G S FN +Q+Y+H+R+
Sbjct: 184 VGALKLLLSHGLSESARHFNHKQKYKHIRL 213
>ref|XP_004144076.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis
sativus]
Length = 218
Score = 85.9 bits (211), Expect = 5e-15
Identities = 36/90 (40%), Positives = 62/90 (68%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH HKG+ VI F G + F RL IGIG+ P MD++A++LQ+F ++ QE+++++ + G
Sbjct: 124 GHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQERIDTALQEG 183
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
+ +++LL+ G S FN +Q+Y+H+R+
Sbjct: 184 VGALKLLLSHGLSESARHFNHKQKYKHIRL 213
>ref|XP_003565295.1| PREDICTED: chloroplastic group IIB intron splicing facilitator
CRS2, chloroplastic-like [Brachypodium distachyon]
Length = 369
Score = 85.9 bits (211), Expect = 5e-15
Identities = 39/90 (43%), Positives = 61/90 (67%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ +VIE +G + FPRL IGIG P MD RA++LQ+F+S ++ +++ + E G
Sbjct: 280 GHGRHNGLQNVIEHLDGCREFPRLSIGIGSPPGKMDTRAFLLQKFSSEERVQIDIALEQG 339
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +R L+ +GFS +E FN Q+Y+ RV
Sbjct: 340 VDAVRTLVLKGFSGSIERFNLVQKYKFNRV 369
>ref|XP_003630435.1| Chloroplastic group IIB intron splicing facilitator CRS2-B
[Medicago truncatula] gi|355524457|gb|AET04911.1|
Chloroplastic group IIB intron splicing facilitator
CRS2-B [Medicago truncatula]
Length = 243
Score = 85.9 bits (211), Expect = 5e-15
Identities = 39/90 (43%), Positives = 61/90 (67%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH H G+ +VI +G + FPRL IGIG P TMD RA++LQ+F+S ++++V+ S E G
Sbjct: 154 GHGHHNGLKNVIGHLDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQVDESLEQG 213
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +R L+ GF+ + FN Q+Y++ RV
Sbjct: 214 VQAVRTLVLNGFNHHVNRFNLGQKYKYNRV 243
>gb|ESW31422.1| hypothetical protein PHAVU_002G237100g [Phaseolus vulgaris]
gi|561032844|gb|ESW31423.1| hypothetical protein
PHAVU_002G237100g [Phaseolus vulgaris]
Length = 217
Score = 85.1 bits (209), Expect = 9e-15
Identities = 35/90 (38%), Positives = 61/90 (67%)
Frame = +3
Query: 3 GHRGHKGVSHVIEKFEGRKSFPRLYIGIGQRPETMDNRAYVLQRFTSSDQEKVNSSFEHG 182
GH HKG+ VI F G + FPRL IGIG P MD +A++LQ+F + +++++ + + G
Sbjct: 123 GHGCHKGLKSVIYHFRGNREFPRLRIGIGSPPGQMDPKAFLLQKFNLTARQRIDEALQEG 182
Query: 183 LEGIRMLLAEGFSRKLELFNRRQRYQHMRV 272
++ +++LL +G + + FN+ Q+Y+H+RV
Sbjct: 183 VDALKLLLFKGLAESAKRFNKEQKYKHLRV 212