BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00011134
         (829 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006843755.1| hypothetical protein AMTR_s00007p00235560 [A...   232   1e-58
emb|CBI27055.3| unnamed protein product [Vitis vinifera]              231   2e-58
ref|XP_002278845.1| PREDICTED: uncharacterized protein LOC100259...   231   2e-58
ref|XP_006437725.1| hypothetical protein CICLE_v10030710mg [Citr...   225   1e-56
ref|XP_002311445.2| hypothetical protein POPTR_0008s11650g [Popu...   224   3e-56
gb|EOY02124.1| Phytochrome and flowering time regulatory protein...   224   4e-56
gb|EOY02123.1| Phytochrome and flowering time regulatory protein...   224   4e-56
ref|XP_004252687.1| PREDICTED: mediator of RNA polymerase II tra...   223   5e-56
ref|XP_006354095.1| PREDICTED: mediator of RNA polymerase II tra...   222   1e-55
gb|ABM81545.1| phytochrome and flowering time protein 1 [Triticu...   220   5e-55
ref|XP_006484420.1| PREDICTED: mediator of RNA polymerase II tra...   219   9e-55
ref|XP_004956526.1| PREDICTED: mediator of RNA polymerase II tra...   219   9e-55
ref|XP_004166861.1| PREDICTED: mediator of RNA polymerase II tra...   219   9e-55
ref|XP_004135110.1| PREDICTED: mediator of RNA polymerase II tra...   219   9e-55
ref|NP_173925.3| mediator of RNA polymerase II transcription sub...   218   2e-54
ref|XP_004297135.1| PREDICTED: mediator of RNA polymerase II tra...   218   3e-54
dbj|BAD36509.1| putative SMA-9 class B [Oryza sativa Japonica Gr...   217   4e-54
gb|EEE69415.1| hypothetical protein OsJ_28785 [Oryza sativa Japo...   217   4e-54
gb|EEC84311.1| hypothetical protein OsI_30806 [Oryza sativa Indi...   217   4e-54
ref|XP_003577974.1| PREDICTED: uncharacterized protein LOC100843...   216   6e-54

>ref|XP_006843755.1| hypothetical protein AMTR_s00007p00235560 [Amborella trichopoda]
           gi|548846123|gb|ERN05430.1| hypothetical protein
           AMTR_s00007p00235560 [Amborella trichopoda]
          Length = 717

 Score =  232 bits (591), Expect = 1e-58
 Identities = 120/241 (49%), Positives = 161/241 (66%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           E+QLVV++EGTAA+GP+W  I+   ++KI+R FYG+D S QK PGAN E AL++F SHGP
Sbjct: 3   EKQLVVIVEGTAAMGPFWPSIQSEILEKIIRVFYGSDLSGQKLPGANVEFALIMFYSHGP 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQISQK 464
           +S CL+QRSGWT NLD F +WL SI+F                    + SN   S    K
Sbjct: 63  YSDCLLQRSGWTRNLDLFLRWLSSISF-SGGGFGEAAIGEGLSEALWICSNMTQSLEGHK 121

Query: 465 HCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMVTLSVI 644
           HC+LVA SNP+ LPTPVP+  +  S  QNG+++ Q   +LAD ETVAKA++Q  V+LSVI
Sbjct: 122 HCILVAASNPHALPTPVPQLPK--SLDQNGSSDGQKEIYLADAETVAKAFSQYSVSLSVI 179

Query: 645 APKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTSSNANQ 824
           +PK+LP  ++IYNAAK+N    DP IDN K   +L+L+S+ F EA +AL    T+  A+Q
Sbjct: 180 SPKNLPKLRAIYNAAKRNSRVPDPAIDNTKYPHYLILLSDLFVEARAALRPGITNLPASQ 239

Query: 825 S 827
           +
Sbjct: 240 N 240


>emb|CBI27055.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score =  231 bits (589), Expect = 2e-58
 Identities = 122/247 (49%), Positives = 162/247 (65%), Gaps = 6/247 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           E+QLVV +EGTAA+GPYW  +   Y+DKI+R F GN+ + QK   +N EL+LV+F++HG 
Sbjct: 3   EKQLVVAVEGTAAMGPYWQAVVSDYLDKIIRYFCGNELAGQKPSSSNFELSLVMFNAHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQI--- 455
           + +CLVQRSGWT ++D F +WL ++ F                   M S    GSQ    
Sbjct: 63  YCSCLVQRSGWTRDVDLFLQWLSALPFAGGGFNDAAIAEGLAEALMMFSVAANGSQTQQN 122

Query: 456 --SQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              Q+HC+LVA +NPYPLPTPV +P ++ + +QN + ESQT   L+D E VAK++AQ  V
Sbjct: 123 VDGQRHCILVAANNPYPLPTPVYQP-QMQNMEQNESIESQTESRLSDAEAVAKSFAQCSV 181

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSVI PK LP  KSIYNA K+N    DP +DN+KN   LVLIS++F EA +ALS PG S
Sbjct: 182 SLSVICPKQLPKLKSIYNAGKRNPRVADPPVDNVKNPHFLVLISDSFMEARAALSRPGLS 241

Query: 810 S-NANQS 827
           +  ANQS
Sbjct: 242 NMTANQS 248


>ref|XP_002278845.1| PREDICTED: uncharacterized protein LOC100259509 [Vitis vinifera]
          Length = 827

 Score =  231 bits (589), Expect = 2e-58
 Identities = 122/247 (49%), Positives = 162/247 (65%), Gaps = 6/247 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           E+QLVV +EGTAA+GPYW  +   Y+DKI+R F GN+ + QK   +N EL+LV+F++HG 
Sbjct: 3   EKQLVVAVEGTAAMGPYWQAVVSDYLDKIIRYFCGNELAGQKPSSSNFELSLVMFNAHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQI--- 455
           + +CLVQRSGWT ++D F +WL ++ F                   M S    GSQ    
Sbjct: 63  YCSCLVQRSGWTRDVDLFLQWLSALPFAGGGFNDAAIAEGLAEALMMFSVAANGSQTQQN 122

Query: 456 --SQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              Q+HC+LVA +NPYPLPTPV +P ++ + +QN + ESQT   L+D E VAK++AQ  V
Sbjct: 123 VDGQRHCILVAANNPYPLPTPVYQP-QMQNMEQNESIESQTESRLSDAEAVAKSFAQCSV 181

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSVI PK LP  KSIYNA K+N    DP +DN+KN   LVLIS++F EA +ALS PG S
Sbjct: 182 SLSVICPKQLPKLKSIYNAGKRNPRVADPPVDNVKNPHFLVLISDSFMEARAALSRPGLS 241

Query: 810 S-NANQS 827
           +  ANQS
Sbjct: 242 NMTANQS 248


>ref|XP_006437725.1| hypothetical protein CICLE_v10030710mg [Citrus clementina]
           gi|568861864|ref|XP_006484419.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 25-like isoform
           X1 [Citrus sinensis] gi|557539921|gb|ESR50965.1|
           hypothetical protein CICLE_v10030710mg [Citrus
           clementina]
          Length = 830

 Score =  225 bits (574), Expect = 1e-56
 Identities = 119/243 (48%), Positives = 154/243 (63%), Gaps = 5/243 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           E+QL+V +EGTAA+GPYW  I   Y++KI+R F  N+ + QK   +N EL+LV F++HG 
Sbjct: 3   EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQ---- 452
           + ACLVQRSGWT ++D F  WL +I F                   M S    GSQ    
Sbjct: 63  YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQN 122

Query: 453 -ISQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              Q+HC+LVA SNP+PLPTPV RP ++ +  QN N E+Q    L+D ETVAK++ Q  V
Sbjct: 123 VDGQRHCILVAASNPHPLPTPVYRP-QMQNLDQNENNEAQAESRLSDAETVAKSFVQCSV 181

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSVI PK LP   +IYNAAK+N  + DP +DN KN   LVLISENF EA +ALS PG +
Sbjct: 182 SLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVA 241

Query: 810 SNA 818
           + A
Sbjct: 242 NLA 244


>ref|XP_002311445.2| hypothetical protein POPTR_0008s11650g [Populus trichocarpa]
           gi|550332870|gb|EEE88812.2| hypothetical protein
           POPTR_0008s11650g [Populus trichocarpa]
          Length = 896

 Score =  224 bits (571), Expect = 3e-56
 Identities = 116/247 (46%), Positives = 160/247 (64%), Gaps = 6/247 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ++QL+V +EGTAA+GP+W  I   Y++KI+R + GN++S QK P ++ EL+LV F+SHG 
Sbjct: 3   DKQLIVAVEGTAAMGPFWSIIVSDYLEKIIRCYCGNETSGQKPPTSSAELSLVTFNSHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQI--- 455
           +SACLVQRSGWT ++D F  WL +I F                   M      G+Q    
Sbjct: 63  YSACLVQRSGWTRDVDIFLHWLSAIPFAGGGFNDAAIAEGLSEALMMFPITPNGNQTQPN 122

Query: 456 --SQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              Q++C+L+A SNP+PLPTPV RP ++ + +Q  N ++Q    L+D ETVAK++ Q  V
Sbjct: 123 TDGQRNCILIAASNPHPLPTPVYRP-QIQNLEQTENIDAQNESRLSDAETVAKSFPQCSV 181

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPG-T 806
           +LSVI PK LP  + IYNA K+N  + DP +DN+KN   LVLISENF EA +ALS PG T
Sbjct: 182 SLSVICPKQLPKLRLIYNAGKRNSRAADPPVDNIKNPHFLVLISENFMEARAALSRPGAT 241

Query: 807 SSNANQS 827
           S  +NQ+
Sbjct: 242 SLPSNQT 248


>gb|EOY02124.1| Phytochrome and flowering time regulatory protein isoform 2
           [Theobroma cacao]
          Length = 860

 Score =  224 bits (570), Expect = 4e-56
 Identities = 120/247 (48%), Positives = 157/247 (63%), Gaps = 6/247 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ERQL+V +EGTAA+GPYW  +   Y+DKI+R F  ++ + QK   +N ELALV F++HG 
Sbjct: 3   ERQLIVAVEGTAAMGPYWQTVVSDYLDKIIRCFSSSELTGQKTSTSNVELALVTFNTHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQI--- 455
           + ACLVQRSGWT ++D F +WL +I F                   M      G+Q    
Sbjct: 63  YCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAPNGNQTQQN 122

Query: 456 --SQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              Q+HC+LVA SNPYPLPTPV RP ++ + +Q  N E+QT   L+D ETVAK++AQ  V
Sbjct: 123 VDGQRHCILVAASNPYPLPTPVYRP-QIQNLEQTENIEAQTESRLSDAETVAKSFAQCSV 181

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSVI PK L   K+IY+A K+N  + DP +DN++N   LVLISENF E  +ALS PG  
Sbjct: 182 SLSVICPKQLSKLKTIYSAGKRNPRAPDPPVDNVRNPPFLVLISENFMEGRAALSRPGVP 241

Query: 810 SNA-NQS 827
           S A NQS
Sbjct: 242 SLASNQS 248


>gb|EOY02123.1| Phytochrome and flowering time regulatory protein isoform 1
           [Theobroma cacao]
          Length = 871

 Score =  224 bits (570), Expect = 4e-56
 Identities = 120/247 (48%), Positives = 157/247 (63%), Gaps = 6/247 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ERQL+V +EGTAA+GPYW  +   Y+DKI+R F  ++ + QK   +N ELALV F++HG 
Sbjct: 3   ERQLIVAVEGTAAMGPYWQTVVSDYLDKIIRCFSSSELTGQKTSTSNVELALVTFNTHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQI--- 455
           + ACLVQRSGWT ++D F +WL +I F                   M      G+Q    
Sbjct: 63  YCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAPNGNQTQQN 122

Query: 456 --SQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              Q+HC+LVA SNPYPLPTPV RP ++ + +Q  N E+QT   L+D ETVAK++AQ  V
Sbjct: 123 VDGQRHCILVAASNPYPLPTPVYRP-QIQNLEQTENIEAQTESRLSDAETVAKSFAQCSV 181

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSVI PK L   K+IY+A K+N  + DP +DN++N   LVLISENF E  +ALS PG  
Sbjct: 182 SLSVICPKQLSKLKTIYSAGKRNPRAPDPPVDNVRNPPFLVLISENFMEGRAALSRPGVP 241

Query: 810 SNA-NQS 827
           S A NQS
Sbjct: 242 SLASNQS 248


>ref|XP_004252687.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           25-like [Solanum lycopersicum]
          Length = 805

 Score =  223 bits (569), Expect = 5e-56
 Identities = 116/244 (47%), Positives = 157/244 (64%), Gaps = 4/244 (1%)
 Frame = +3

Query: 102 MERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHG 281
           M  +L+V +EGTA LGPYW  I   Y+DKI+R F+G DS++QK   A+ E+++V+F++HG
Sbjct: 1   MVDKLIVAVEGTAVLGPYWKIIVSDYLDKIIRCFFGVDSTSQKSSAADVEVSMVMFNTHG 60

Query: 282 PHSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLS---SNQVGSQ 452
           P+SACLVQRSGWT ++D F +WL +I F                   M S    NQ   +
Sbjct: 61  PYSACLVQRSGWTKDMDTFLQWLSAIPFSGGGFNDAAVAEGLAEALVMFSVPNGNQTQQK 120

Query: 453 I-SQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
           +  +KHC+L++ SNPYPLPTPV RP ++   +QN N E+QT   LAD ETVAK + Q  +
Sbjct: 121 MEGKKHCILISGSNPYPLPTPVYRP-QMQKLEQNENIEAQTDSRLADAETVAKTFPQCSI 179

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSVI PK LP  ++IY+A K N  + DP ID  KN   LVLISENF EA +A S  G +
Sbjct: 180 SLSVICPKKLPKLRAIYDAGKHNPRAADPPIDTAKNPNFLVLISENFIEARAAFSRSGLT 239

Query: 810 SNAN 821
           + A+
Sbjct: 240 NLAS 243


>ref|XP_006354095.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           25-like [Solanum tuberosum]
          Length = 819

 Score =  222 bits (565), Expect = 1e-55
 Identities = 116/244 (47%), Positives = 158/244 (64%), Gaps = 4/244 (1%)
 Frame = +3

Query: 102 MERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHG 281
           M  +L+V +EGTAALGPYW  I   Y+DKI+R F+G DS++QK   A+ E++LV+F++HG
Sbjct: 1   MVDKLIVAVEGTAALGPYWKTIVSDYLDKIIRCFFGVDSTSQKSSAADVEVSLVMFNTHG 60

Query: 282 PHSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXM---LSSNQVGSQ 452
            +SACLVQRSGWT ++D F +WL +I F                   M   L+ NQ    
Sbjct: 61  SYSACLVQRSGWTRDMDTFLQWLSAIPFLGGGFNDAAVAEGLAEALVMFSGLNGNQSQQN 120

Query: 453 I-SQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
           +  +KHC+L++ SNPYPLPTPV RP ++   +QN N E+QT   L+D ETVAKA+ Q  +
Sbjct: 121 MEGKKHCILISGSNPYPLPTPVYRP-QMQKLEQNENIEAQTDSRLSDAETVAKAFPQCSI 179

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSV+ PK LP  ++IY+A K N  + DP ID  KN   LVLISENF EA +A S  G +
Sbjct: 180 SLSVLCPKKLPKLRAIYDAGKHNPRAADPPIDTAKNPNFLVLISENFIEARAAFSRSGMT 239

Query: 810 SNAN 821
           + A+
Sbjct: 240 NLAS 243


>gb|ABM81545.1| phytochrome and flowering time protein 1 [Triticum aestivum]
          Length = 759

 Score =  220 bits (560), Expect = 5e-55
 Identities = 119/237 (50%), Positives = 150/237 (63%), Gaps = 5/237 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ERQLVVV+EGTAALGPYW  I   Y++KIVR+F   + S QK  G   ELALVVF +HGP
Sbjct: 8   ERQLVVVVEGTAALGPYWPAIAAEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGP 67

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS-- 458
           +SA +VQRSGWT ++D F  WL  I+F                   +L  +   SQ    
Sbjct: 68  YSAFIVQRSGWTKDMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSSSSSQNHQN 127

Query: 459 ---QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              QKHC+LVA SNPYPLPTPV RP   +S  +  N E+     LAD E VA ++AQ  V
Sbjct: 128 RELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSN-EATKESCLADAEAVAVSFAQCSV 186

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSP 800
           +LSV++PK LPT K+IYNA K+N  ++DP +D+ KN   LVL+SE+F EA +ALS P
Sbjct: 187 SLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHP 243


>ref|XP_006484420.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           25-like isoform X2 [Citrus sinensis]
          Length = 829

 Score =  219 bits (558), Expect = 9e-55
 Identities = 118/243 (48%), Positives = 153/243 (62%), Gaps = 5/243 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           E+QL+V +EGTAA+GPYW  I   Y++KI+R F  N+ + Q    +N EL+LV F++HG 
Sbjct: 3   EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTS-ASNVELSLVTFNTHGS 61

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQISQ- 461
           + ACLVQRSGWT ++D F  WL +I F                   M S    GSQ  Q 
Sbjct: 62  YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQN 121

Query: 462 ----KHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
               +HC+LVA SNP+PLPTPV RP ++ +  QN N E+Q    L+D ETVAK++ Q  V
Sbjct: 122 VDGQRHCILVAASNPHPLPTPVYRP-QMQNLDQNENNEAQAESRLSDAETVAKSFVQCSV 180

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSVI PK LP   +IYNAAK+N  + DP +DN KN   LVLISENF EA +ALS PG +
Sbjct: 181 SLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVA 240

Query: 810 SNA 818
           + A
Sbjct: 241 NLA 243


>ref|XP_004956526.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           25-like [Setaria italica]
          Length = 773

 Score =  219 bits (558), Expect = 9e-55
 Identities = 122/237 (51%), Positives = 147/237 (62%), Gaps = 5/237 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ERQLVV +EGTAALGPYW  I   Y++KIVR+F  N+   QK  GA  ELALVVF +HGP
Sbjct: 7   ERQLVVAVEGTAALGPYWSTIVGDYVEKIVRSFCANEVPGQKLAGAPPELALVVFHTHGP 66

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQI--- 455
           +SA  VQRSGWT ++D+F  WL  I F                   +L      +Q    
Sbjct: 67  YSAFGVQRSGWTKDIDSFLSWLSGIPFSGGGFSEASTCEGLAEALMILQGTPNTTQSHPN 126

Query: 456 --SQKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
             +QKHCVLVA SNPYPLPTPV       ST    N ES     +AD ETVAK++AQ  V
Sbjct: 127 HEAQKHCVLVAASNPYPLPTPV-YCLPTQSTDHKENTESSKEPSIADAETVAKSFAQCSV 185

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSP 800
           +LSVI+PK LPT K+IYNA K+N  + DP +D+ KN   LVL+SENF EA +ALS P
Sbjct: 186 SLSVISPKQLPTLKAIYNAGKRNPRAADPSVDHAKNPHFLVLLSENFMEARTALSRP 242


>ref|XP_004166861.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           25-like, partial [Cucumis sativus]
          Length = 595

 Score =  219 bits (558), Expect = 9e-55
 Identities = 119/247 (48%), Positives = 157/247 (63%), Gaps = 6/247 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ++QL+VV+EGTAA+GP+W  +   YI+KIVR+F GN+ + QK P +N E +LV F +HG 
Sbjct: 3   DKQLIVVVEGTAAMGPFWQTVVSDYIEKIVRSFCGNELTGQKPPTSNVEFSLVTFHTHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS-- 458
           +  CLVQR+GWT ++D F +WL +I F                   M  +   G Q    
Sbjct: 63  YCGCLVQRTGWTRDVDIFIQWLSAIPFSGGGFSDAAIAEGLAEALMMFPTQPNGGQNQQT 122

Query: 459 ---QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              QKHC+LVA SNPYPLPTPV RP  + + +Q+ N E  + Q  A  ETVAK++ Q  +
Sbjct: 123 MDMQKHCILVAASNPYPLPTPVYRP-AVQNLEQHDNVEPGSSQSYA--ETVAKSFPQCFI 179

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPG-T 806
           +LSVI PK LP  K+IY A K+N  + DP IDN+K+  +LVLISENF EA +ALS PG T
Sbjct: 180 SLSVICPKQLPKLKAIYTAGKRNPRAADPPIDNVKSPSYLVLISENFVEARAALSRPGIT 239

Query: 807 SSNANQS 827
           S  ANQS
Sbjct: 240 SLPANQS 246


>ref|XP_004135110.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           25-like [Cucumis sativus]
          Length = 858

 Score =  219 bits (558), Expect = 9e-55
 Identities = 119/247 (48%), Positives = 157/247 (63%), Gaps = 6/247 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ++QL+VV+EGTAA+GP+W  +   YI+KIVR+F GN+ + QK P +N E +LV F +HG 
Sbjct: 3   DKQLIVVVEGTAAMGPFWQTVVSDYIEKIVRSFCGNELTGQKPPTSNVEFSLVTFHTHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS-- 458
           +  CLVQR+GWT ++D F +WL +I F                   M  +   G Q    
Sbjct: 63  YCGCLVQRTGWTRDVDIFIQWLSAIPFSGGGFSDAAIAEGLAEALMMFPTQPNGGQNQQT 122

Query: 459 ---QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              QKHC+LVA SNPYPLPTPV RP  + + +Q+ N E  + Q  A  ETVAK++ Q  +
Sbjct: 123 MDMQKHCILVAASNPYPLPTPVYRP-AVQNLEQHDNVEPGSSQSYA--ETVAKSFPQCFI 179

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPG-T 806
           +LSVI PK LP  K+IY A K+N  + DP IDN+K+  +LVLISENF EA +ALS PG T
Sbjct: 180 SLSVICPKQLPKLKAIYTAGKRNPRAADPPIDNVKSPSYLVLISENFVEARAALSRPGIT 239

Query: 807 SSNANQS 827
           S  ANQS
Sbjct: 240 SLPANQS 246


>ref|NP_173925.3| mediator of RNA polymerase II transcription subunit 25 [Arabidopsis
           thaliana] gi|75145501|sp|Q7XYY2.1|MED25_ARATH RecName:
           Full=Mediator of RNA polymerase II transcription subunit
           25; Short=AtMED25; AltName: Full=Phytochrome and
           flowering time 1 protein; AltName: Full=Phytochrome and
           flowering time regulatory protein 1
           gi|32478899|gb|AAO39425.1| phytochrome and flowering
           time 1 protein [Arabidopsis thaliana]
           gi|332192518|gb|AEE30639.1| mediator of RNA polymerase
           II transcription subunit 25 [Arabidopsis thaliana]
          Length = 836

 Score =  218 bits (556), Expect = 2e-54
 Identities = 115/243 (47%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
 Frame = +3

Query: 108 RQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGPH 287
           +QL+VV EGTAALGPYW  I   Y++KI+R+F G++ + ++ P +  EL+LV+F+SHG +
Sbjct: 6   KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65

Query: 288 SACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS--- 458
            ACLVQRSGWT ++D F  WL SI F                   M S     +Q S   
Sbjct: 66  CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFSPPSGQAQPSNDL 125

Query: 459 QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMVTLS 638
           ++HC+L+  SNP+ LPTPV RP RL + ++N N ++Q    L+D ETVA  +A+  V+LS
Sbjct: 126 KRHCILITASNPHILPTPVYRP-RLQNVERNENGDAQAESRLSDAETVASYFAKCSVSLS 184

Query: 639 VIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTSSNA 818
           V+ PK LPT +++YNA K NQ S D  ID  KNT +LVLISENF EAC+ALS   T+   
Sbjct: 185 VVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSHSATNLPQ 244

Query: 819 NQS 827
            QS
Sbjct: 245 TQS 247


>ref|XP_004297135.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           25-like [Fragaria vesca subsp. vesca]
          Length = 855

 Score =  218 bits (554), Expect = 3e-54
 Identities = 110/241 (45%), Positives = 155/241 (64%), Gaps = 5/241 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           E+QL+VV+EGTAA+GPYW  +   Y++K++R+  GN+ S QK   +  E++LV F++HG 
Sbjct: 3   EKQLIVVVEGTAAMGPYWPAVVSDYVEKVIRSLSGNELSGQKPSSSTVEMSLVTFNTHGS 62

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS-- 458
           +S CLVQR+GWT +++ F +WL +I                     M  + Q G Q    
Sbjct: 63  YSGCLVQRTGWTRDIELFLQWLSAIPLAGGGFSDAAIAEGLSEALMMFPTIQNGGQNQQN 122

Query: 459 ---QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              QKHC+LVA SNP+PLPTPV RP ++ + +Q+ N ++QT   L D E VAK++ Q  V
Sbjct: 123 VDFQKHCILVAASNPHPLPTPVYRP-QMQNVEQSENFDAQTESRLYDAEAVAKSFPQCSV 181

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSPGTS 809
           +LSVI PK LP  ++IYNA K+N  + DP IDN+KN   LVLISENF EA + LS PG++
Sbjct: 182 SLSVICPKQLPKLRAIYNAGKRNPRAEDPPIDNVKNPHFLVLISENFIEARATLSRPGST 241

Query: 810 S 812
           +
Sbjct: 242 T 242


>dbj|BAD36509.1| putative SMA-9 class B [Oryza sativa Japonica Group]
           gi|215769266|dbj|BAH01495.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 842

 Score =  217 bits (553), Expect = 4e-54
 Identities = 117/237 (49%), Positives = 149/237 (62%), Gaps = 5/237 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ERQLVV +EGTAALGPYW      Y++KIVR+F  ++ + QK  G   ELALVVF +HGP
Sbjct: 7   ERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGP 66

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS-- 458
           +SA  VQRSGWT +++ F  WL  I+F                   +L  +   SQ    
Sbjct: 67  YSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQS 126

Query: 459 ---QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              QKHC+LVA SNPYPLPTPV RP  + S+    N +      LAD ETVAK++AQ  V
Sbjct: 127 HEVQKHCILVAASNPYPLPTPVYRP-LVQSSDHKENNDGAKESCLADAETVAKSFAQCSV 185

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSP 800
           +LSV++PK LPT K+IYNAAK+N  + DP +D+ KN   LVL+S+NF EA +ALS P
Sbjct: 186 SLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRP 242


>gb|EEE69415.1| hypothetical protein OsJ_28785 [Oryza sativa Japonica Group]
          Length = 839

 Score =  217 bits (553), Expect = 4e-54
 Identities = 117/237 (49%), Positives = 149/237 (62%), Gaps = 5/237 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ERQLVV +EGTAALGPYW      Y++KIVR+F  ++ + QK  G   ELALVVF +HGP
Sbjct: 7   ERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGP 66

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS-- 458
           +SA  VQRSGWT +++ F  WL  I+F                   +L  +   SQ    
Sbjct: 67  YSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQS 126

Query: 459 ---QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              QKHC+LVA SNPYPLPTPV RP  + S+    N +      LAD ETVAK++AQ  V
Sbjct: 127 HEVQKHCILVAASNPYPLPTPVYRP-LVQSSDHKENNDGAKESCLADAETVAKSFAQCSV 185

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSP 800
           +LSV++PK LPT K+IYNAAK+N  + DP +D+ KN   LVL+S+NF EA +ALS P
Sbjct: 186 SLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRP 242


>gb|EEC84311.1| hypothetical protein OsI_30806 [Oryza sativa Indica Group]
          Length = 959

 Score =  217 bits (553), Expect = 4e-54
 Identities = 117/237 (49%), Positives = 149/237 (62%), Gaps = 5/237 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ERQLVV +EGTAALGPYW      Y++KIVR+F  ++ + QK  G   ELALVVF +HGP
Sbjct: 106 ERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGP 165

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS-- 458
           +SA  VQRSGWT +++ F  WL  I+F                   +L  +   SQ    
Sbjct: 166 YSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQS 225

Query: 459 ---QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              QKHC+LVA SNPYPLPTPV RP  + S+    N +      LAD ETVAK++AQ  V
Sbjct: 226 HEVQKHCILVAASNPYPLPTPVYRP-LVQSSDHKENNDGAKESCLADAETVAKSFAQCSV 284

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSP 800
           +LSV++PK LPT K+IYNAAK+N  + DP +D+ KN   LVL+S+NF EA +ALS P
Sbjct: 285 SLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRP 341


>ref|XP_003577974.1| PREDICTED: uncharacterized protein LOC100843505 [Brachypodium
           distachyon]
          Length = 771

 Score =  216 bits (551), Expect = 6e-54
 Identities = 118/237 (49%), Positives = 148/237 (62%), Gaps = 5/237 (2%)
 Frame = +3

Query: 105 ERQLVVVIEGTAALGPYWIDIRDHYIDKIVRAFYGNDSSNQKQPGANGELALVVFSSHGP 284
           ERQLVVV+EGTAALGPYW  I   Y++KIVR+F     S QK  G   ELALVVF +HGP
Sbjct: 8   ERQLVVVVEGTAALGPYWHTIAAEYVEKIVRSFCAAQLSGQKLAGVPPELALVVFHTHGP 67

Query: 285 HSACLVQRSGWTSNLDNFFKWLQSINFCXXXXXXXXXXXXXXXXXXMLSSNQVGSQIS-- 458
           +SA +VQRSGWT ++D F  WL  I+F                   +L  +   +Q    
Sbjct: 68  YSAFVVQRSGWTKDMDTFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSPSNNQNHQN 127

Query: 459 ---QKHCVLVATSNPYPLPTPVPRPHRLNSTQQNGNAESQTPQWLADTETVAKAYAQLMV 629
              QKHCVLVA SNPYPLPTPV RP  + S     N E      LAD E VA +++Q  V
Sbjct: 128 HELQKHCVLVAASNPYPLPTPVYRPF-VQSGDHKKNNEVTKESCLADAEAVAISFSQCCV 186

Query: 630 TLSVIAPKDLPTFKSIYNAAKQNQTSTDPVIDNMKNTQHLVLISENFTEACSALSSP 800
           +LSV++PK LPT K+IYNA K+N  ++DP +D++KN   LVL+SE+F EA +ALS P
Sbjct: 187 SLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHVKNPHFLVLLSESFMEARTALSHP 243