BLASTX nr result
ID: Ephedra28_contig00011002
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00011002
(742 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633401.1| PREDICTED: uncharacterized protein LOC100852... 66 1e-08
emb|CBI29694.3| unnamed protein product [Vitis vinifera] 66 1e-08
emb|CAN60293.1| hypothetical protein VITISV_023400 [Vitis vinifera] 65 3e-08
gb|EOX97031.1| Smg-4/UPF3 family protein, putative isoform 1 [Th... 64 4e-08
gb|EOX97032.1| Smg-4/UPF3 family protein, putative isoform 2, pa... 63 9e-08
ref|XP_006389505.1| hypothetical protein POPTR_0022s00460g [Popu... 62 2e-07
ref|XP_006385051.1| hypothetical protein POPTR_0004s23450g [Popu... 62 3e-07
ref|XP_002328787.1| predicted protein [Populus trichocarpa] gi|5... 62 3e-07
ref|XP_006492554.1| PREDICTED: regulator of nonsense transcripts... 57 8e-06
>ref|XP_003633401.1| PREDICTED: uncharacterized protein LOC100852735 [Vitis vinifera]
Length = 322
Score = 65.9 bits (159), Expect = 1e-08
Identities = 71/245 (28%), Positives = 104/245 (42%), Gaps = 18/245 (7%)
Frame = -3
Query: 686 GMGRLTDTSMSSNISIAQRKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGGSMFK-NQ 510
G L + S S A +K L LKG N +TSP + G + K NQ
Sbjct: 42 GAEALEEESGVSGAVDAGKKKVLLLKGKEREISHHLLQQN--VTSPVKNILGANAPKQNQ 99
Query: 509 RREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRK---------------- 381
RRE GR + L+NKD +QS QS Q E Q+Q + ++ R
Sbjct: 100 RREGSGRIIRSILLNKDARQS-QSSMFQTEQQSQASNLEKEKRPPRPPHIQLASKETNGA 158
Query: 380 SFDEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVISGTQGA 201
D+ +D+H+ ++EK D+ T+N+ RPDR +WT RR++G
Sbjct: 159 QDDKVVGNDVHS--FVSEKQDKRTRNKDRPDRGVWTPLRRSDG----------------- 199
Query: 200 AHASSEVTESDEASVIDSSGITSPGFTSSGRINRNFLDTYANQGEMKSEKALLRMGDSRV 21
+HA SDE+ +S TS F + GEM+S+ + R G+ +
Sbjct: 200 SHA------SDESLSSSASQPTSSDFPE------------GSHGEMRSDMSNARSGEVKA 241
Query: 20 QGSAR 6
GS R
Sbjct: 242 LGSGR 246
>emb|CBI29694.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 65.9 bits (159), Expect = 1e-08
Identities = 71/245 (28%), Positives = 104/245 (42%), Gaps = 18/245 (7%)
Frame = -3
Query: 686 GMGRLTDTSMSSNISIAQRKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGGSMFK-NQ 510
G L + S S A +K L LKG N +TSP + G + K NQ
Sbjct: 253 GAEALEEESGVSGAVDAGKKKVLLLKGKEREISHHLLQQN--VTSPVKNILGANAPKQNQ 310
Query: 509 RREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRK---------------- 381
RRE GR + L+NKD +QS QS Q E Q+Q + ++ R
Sbjct: 311 RREGSGRIIRSILLNKDARQS-QSSMFQTEQQSQASNLEKEKRPPRPPHIQLASKETNGA 369
Query: 380 SFDEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVISGTQGA 201
D+ +D+H+ ++EK D+ T+N+ RPDR +WT RR++G
Sbjct: 370 QDDKVVGNDVHS--FVSEKQDKRTRNKDRPDRGVWTPLRRSDG----------------- 410
Query: 200 AHASSEVTESDEASVIDSSGITSPGFTSSGRINRNFLDTYANQGEMKSEKALLRMGDSRV 21
+HA SDE+ +S TS F + GEM+S+ + R G+ +
Sbjct: 411 SHA------SDESLSSSASQPTSSDFPE------------GSHGEMRSDMSNARSGEVKA 452
Query: 20 QGSAR 6
GS R
Sbjct: 453 LGSGR 457
>emb|CAN60293.1| hypothetical protein VITISV_023400 [Vitis vinifera]
Length = 304
Score = 64.7 bits (156), Expect = 3e-08
Identities = 67/229 (29%), Positives = 99/229 (43%), Gaps = 18/229 (7%)
Frame = -3
Query: 638 AQRKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGGSMFK-NQRREPGGRG-KGGLVNK 465
A +K L LKG N +TSP + G + K NQRRE GR + L+NK
Sbjct: 14 AGKKKVLLLKGKEREISHHLLQQN--VTSPVKNILGANAPKQNQRREGSGRIIRSILLNK 71
Query: 464 DFQQSPQSLSLQAEHQNQTPYVHRDIRK----------------SFDEAATSDLHAVPII 333
D +QS QS Q E Q+Q + ++ R D+ +D+H+ +
Sbjct: 72 DARQS-QSSMFQTEQQSQASNLEKEKRPPRPPHIQLASKETNGAQDDKVVGNDVHS--FV 128
Query: 332 AEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVISGTQGAAHASSEVTESDEASVI 153
+EK D+ T+N+ RPDR +WT RR++G +HA SDE+
Sbjct: 129 SEKQDKRTRNKDRPDRGVWTPLRRSDG-----------------SHA------SDESLSS 165
Query: 152 DSSGITSPGFTSSGRINRNFLDTYANQGEMKSEKALLRMGDSRVQGSAR 6
+S TS F + GEM+S+ + R G+ + GS R
Sbjct: 166 SASQPTSSDFPE------------GSHGEMRSDMSNARSGEVKALGSGR 202
>gb|EOX97031.1| Smg-4/UPF3 family protein, putative isoform 1 [Theobroma cacao]
Length = 514
Score = 64.3 bits (155), Expect = 4e-08
Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 18/205 (8%)
Frame = -3
Query: 647 ISIAQRKPSLSLKGVXXXXXXXXXXSNHP--LTSPARGSPGGSMFKNQRREPGGRGKGGL 474
I+ A +K L LKG H +TSP + G + K R G +G L
Sbjct: 266 ITDAVKKKVLLLKGKEKEISPVAGNVLHQQNVTSPIKTILGSTPTKQNSRREGRMIRGIL 325
Query: 473 VNKDFQQSPQSLSLQAEHQNQTPYVHRDIRK----------------SFDEAATSDLHAV 342
+NKD +Q+ QS +Q+E Q +T + +D R S D+ +DLH
Sbjct: 326 LNKDARQN-QSSGVQSEQQIRTSNLEKDRRPPRHSHSHLVLKDTNTASDDKVVGNDLHG- 383
Query: 341 PIIAEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVISGTQGAAHASSEVTESDEA 162
+EKP+R +N+ RPDR +WT RR + ++E S S +Q A + +
Sbjct: 384 ---SEKPERRCRNKDRPDRGVWTLRRSDGSYASDESMSS--SASQSALIPLDPLEGTYGD 438
Query: 161 SVIDSSGITSPGFTSSGRINRNFLD 87
+ +D S + S + G + LD
Sbjct: 439 TKVDLSNVRSVQVKTVGSGRNSSLD 463
>gb|EOX97032.1| Smg-4/UPF3 family protein, putative isoform 2, partial [Theobroma
cacao]
Length = 440
Score = 63.2 bits (152), Expect = 9e-08
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Frame = -3
Query: 647 ISIAQRKPSLSLKGVXXXXXXXXXXSNHP--LTSPARGSPGGSMFKNQRREPGGRGKGGL 474
I+ A +K L LKG H +TSP + G + K R G +G L
Sbjct: 273 ITDAVKKKVLLLKGKEKEISPVAGNVLHQQNVTSPIKTILGSTPTKQNSRREGRMIRGIL 332
Query: 473 VNKDFQQSPQSLSLQAEHQNQTPYVHRDIRK----------------SFDEAATSDLHAV 342
+NKD +Q+ QS +Q+E Q +T + +D R S D+ +DLH
Sbjct: 333 LNKDARQN-QSSGVQSEQQIRTSNLEKDRRPPRHSHSHLVLKDTNTASDDKVVGNDLHG- 390
Query: 341 PIIAEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVIS 216
+EKP+R +N+ RPDR +WT RR + ++E S S
Sbjct: 391 ---SEKPERRCRNKDRPDRGVWTLRRSDGSYASDESMSSSAS 429
>ref|XP_006389505.1| hypothetical protein POPTR_0022s00460g [Populus trichocarpa]
gi|550312328|gb|ERP48419.1| hypothetical protein
POPTR_0022s00460g [Populus trichocarpa]
Length = 511
Score = 62.0 bits (149), Expect = 2e-07
Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 23/226 (10%)
Frame = -3
Query: 695 INAGMGRLTDTSMS----SNISIAQRKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGG 528
+ G G T+ S S I+ +K L LKG ++ R
Sbjct: 244 VTLGSGSGTEVSEEETAVSGITGTGKKKILLLKG-----KEKEISLQQSISPSDRNIISS 298
Query: 527 SMFKNQRREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRKSF-------- 375
+ K+QR E GR K L+NKD ++ QS +Q+E Q QT + +D R
Sbjct: 299 TALKSQRHESSGRVIKSILLNKDSRRI-QSSGVQSEPQMQTSNLEKDKRPPRPPHALVLK 357
Query: 374 -------DEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVIS 216
D+ +DLH P EK +R T+N+ RPDR +WT RR + ++E S
Sbjct: 358 DANGTPDDKVVGNDLHGFP--NEKQERRTRNKDRPDRVVWTLRRSEGSYASDESLSSSAY 415
Query: 215 GTQGAAHASSEVTESD---EASVIDSSGITSPGFTSSGRINRNFLD 87
+ + SS+V D + + S + + G SGR N + LD
Sbjct: 416 LSTQSGFDSSQVNHGDVKADTLNLRSGEVKALG---SGRSNHSSLD 458
>ref|XP_006385051.1| hypothetical protein POPTR_0004s23450g [Populus trichocarpa]
gi|550341819|gb|ERP62848.1| hypothetical protein
POPTR_0004s23450g [Populus trichocarpa]
Length = 520
Score = 61.6 bits (148), Expect = 3e-07
Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 20/248 (8%)
Frame = -3
Query: 689 AGMGRLTDTSMSSNISIAQRKPSLSLKGVXXXXXXXXXXSNHP--LTSPARGSPGGSMFK 516
+G L D S+ S I+ + +K L LKG + ++S R + K
Sbjct: 251 SGTAVLEDESVVSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSDRNIISSTALK 310
Query: 515 NQRREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRKSF------------ 375
+QRRE GR + L+NKD + +S + +E Q QT + ++ R
Sbjct: 311 SQRRETSGRMIRSILLNKDSRHI-RSSGVHSEPQMQTSNLEKEKRPPRPPHAQLGLKDAN 369
Query: 374 ----DEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANG-FGNEEGFQSVISGT 210
D+ +DLH P EK ++ T+N+ RPDR +WT RR++G + ++E S
Sbjct: 370 GTPDDKVVGNDLHGFP--NEKQEKRTRNKDRPDRGVWTPLRRSDGSYASDESLLS----- 422
Query: 209 QGAAHASSEVTESDEASVIDSSGITSPGFTSSGRINRNFLDTYANQGEMKSEKALLRMGD 30
++S+ T+ SV DSS N G++K + LR G+
Sbjct: 423 -----SASQSTQ----SVFDSS--------------------QGNHGDVKVDSLNLRSGE 453
Query: 29 SRVQGSAR 6
+V GS R
Sbjct: 454 VKVLGSGR 461
>ref|XP_002328787.1| predicted protein [Populus trichocarpa]
gi|566168252|ref|XP_006385052.1| Smg-4/UPF3 family
protein [Populus trichocarpa]
gi|550341820|gb|ERP62849.1| Smg-4/UPF3 family protein
[Populus trichocarpa]
Length = 527
Score = 61.6 bits (148), Expect = 3e-07
Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 20/248 (8%)
Frame = -3
Query: 689 AGMGRLTDTSMSSNISIAQRKPSLSLKGVXXXXXXXXXXSNHP--LTSPARGSPGGSMFK 516
+G L D S+ S I+ + +K L LKG + ++S R + K
Sbjct: 251 SGTAVLEDESVVSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSDRNIISSTALK 310
Query: 515 NQRREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRKSF------------ 375
+QRRE GR + L+NKD + +S + +E Q QT + ++ R
Sbjct: 311 SQRRETSGRMIRSILLNKDSRHI-RSSGVHSEPQMQTSNLEKEKRPPRPPHAQLGLKDAN 369
Query: 374 ----DEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANG-FGNEEGFQSVISGT 210
D+ +DLH P EK ++ T+N+ RPDR +WT RR++G + ++E S
Sbjct: 370 GTPDDKVVGNDLHGFP--NEKQEKRTRNKDRPDRGVWTPLRRSDGSYASDESLLS----- 422
Query: 209 QGAAHASSEVTESDEASVIDSSGITSPGFTSSGRINRNFLDTYANQGEMKSEKALLRMGD 30
++S+ T+ SV DSS N G++K + LR G+
Sbjct: 423 -----SASQSTQ----SVFDSS--------------------QGNHGDVKVDSLNLRSGE 453
Query: 29 SRVQGSAR 6
+V GS R
Sbjct: 454 VKVLGSGR 461
>ref|XP_006492554.1| PREDICTED: regulator of nonsense transcripts UPF3-like [Citrus
sinensis]
Length = 514
Score = 56.6 bits (135), Expect = 8e-06
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Frame = -3
Query: 632 RKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGGSMFK-NQRREPGGRG-KGGLVNKDF 459
+K L LKG +H ++ + K NQRRE GR +G L+NKD
Sbjct: 270 KKKVLLLKGKEREISQVSGSVSHQQSASVKNIISSPALKQNQRRENSGRIIRGILLNKDA 329
Query: 458 QQSPQSLSLQAEHQ----------NQTPYVHRDIRK----SFDEAATSDLHAVPIIAEKP 321
+Q+ Q+ L +E Q + +VH ++ S D+ +DLH+ EK
Sbjct: 330 RQN-QASGLHSEQQISNLEKDKRPPRPSHVHLVMKDTNGVSDDKVIVNDLHS-----EKQ 383
Query: 320 DRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVISGTQGAAHASSE 183
+R T+N+ RPDR WT RR + ++E S S +A SSE
Sbjct: 384 ERRTRNKDRPDRAAWTLRRSDGSYQSDESLSSSASQLSLSAVDSSE 429