BLASTX nr result

ID: Ephedra28_contig00010865 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00010865
         (585 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006649249.1| PREDICTED: 40S ribosomal protein S17-like [O...    58   2e-06
ref|XP_006846451.1| hypothetical protein AMTR_s00018p00081410 [A...    58   2e-06
gb|ABK22422.1| unknown [Picea sitchensis]                              57   3e-06

>ref|XP_006649249.1| PREDICTED: 40S ribosomal protein S17-like [Oryza brachyantha]
          Length = 142

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = -3

Query: 583 VPEQSAINIDEILVDKETIDMLASMGMPELPGVKKQVE 470
           VPE+SA+ +DEI VDKET+DMLAS+GM ELPGV +Q +
Sbjct: 85  VPEKSALEVDEIRVDKETLDMLASLGMAELPGVVRQAD 122


>ref|XP_006846451.1| hypothetical protein AMTR_s00018p00081410 [Amborella trichopoda]
           gi|548849261|gb|ERN08126.1| hypothetical protein
           AMTR_s00018p00081410 [Amborella trichopoda]
          Length = 144

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 32/60 (53%), Positives = 39/60 (65%)
 Frame = -3

Query: 583 VPEQSAINIDEILVDKETIDMLASMGMPELPGVKKQVEEPLXXXXXXXXXXXGNYQGGRR 404
           VP++SAI  D I VDKET+DMLA++GMP+LPGV KQ  EP            G + GGRR
Sbjct: 85  VPDESAIKTDVIEVDKETMDMLAALGMPDLPGVVKQ-SEPALSAPYAKPVGAGGFGGGRR 143


>gb|ABK22422.1| unknown [Picea sitchensis]
          Length = 145

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = -3

Query: 583 VPEQSAINIDEILVDKETIDMLASMGMPELPGVKKQVEEP 464
           VP++SAI ID I VDKET+DMLAS+GM +LPGV KQ + P
Sbjct: 85  VPDESAIKIDVIEVDKETMDMLASLGMADLPGVVKQADPP 124


Top