BLASTX nr result
ID: Ephedra28_contig00010422
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00010422
(561 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002531422.1| pentatricopeptide repeat-containing protein,... 101 2e-24
ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containi... 93 3e-24
ref|XP_004301025.1| PREDICTED: pentatricopeptide repeat-containi... 102 5e-24
emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera] 86 6e-24
gb|EOX93361.1| Tetratricopeptide repeat-like superfamily protein... 115 7e-24
gb|ABR16520.1| unknown [Picea sitchensis] 110 8e-24
gb|EOX94498.1| Basic helix-loop-helix DNA-binding superfamily pr... 105 1e-23
ref|XP_004301846.1| PREDICTED: pentatricopeptide repeat-containi... 100 1e-23
ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containi... 84 1e-23
ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containi... 100 2e-23
emb|CBI24389.3| unnamed protein product [Vitis vinifera] 100 2e-23
gb|EOY21263.1| Tetratricopeptide repeat (TPR)-like superfamily p... 113 3e-23
ref|XP_004503293.1| PREDICTED: pentatricopeptide repeat-containi... 113 3e-23
ref|XP_003612258.1| Pentatricopeptide repeat-containing protein ... 113 3e-23
ref|XP_006306877.1| hypothetical protein CARUB_v10008432mg, part... 100 5e-23
ref|XP_003615696.1| Pentatricopeptide repeat-containing protein ... 90 8e-23
ref|XP_006362392.1| PREDICTED: pentatricopeptide repeat-containi... 111 1e-22
ref|XP_002301860.2| pentatricopeptide repeat-containing family p... 100 1e-22
gb|EOY04983.1| Tetratricopeptide repeat (TPR)-like superfamily p... 97 1e-22
ref|XP_002305377.2| hypothetical protein POPTR_0004s12430g [Popu... 99 1e-22
>ref|XP_002531422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528972|gb|EEF30964.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 619
Score = 101 bits (251), Expect(2) = 2e-24
Identities = 46/123 (37%), Positives = 84/123 (68%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F M KDV+SWN+++SGY+ +D +EEA K+FEK+ K + +++ MI G++ + K
Sbjct: 276 FQMMNNKDVVSWNSLISGYIQHDEIEEAYKLFEKIPGK-DVVSWTTMITGFSAKGNVQKG 334
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
+QLF+ M ++ V+WT+++SG+ NG ++EA ++ M ++ V+ N +TF+ +++ A+L
Sbjct: 335 IQLFKIMPEKDDVAWTAVISGFVSNGEYEEAFLWFIEMLKKAVKPNSLTFSSMLTASASL 394
Query: 546 AAL 554
A L
Sbjct: 395 ATL 397
Score = 37.0 bits (84), Expect(2) = 2e-24
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 8 NESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQFF 187
N TL + A G+ +HGLV++ G + + +GN +I YC+ +DEA + F
Sbjct: 217 NPLTLTIMFEACRHFGRYREAMQVHGLVLRIGFEFDIFLGNSIIAMYCEFGCMDEAKRMF 276
Score = 91.3 bits (225), Expect = 1e-16
Identities = 46/121 (38%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Frame = +3
Query: 180 NFFSEMP--YKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQ 353
N + E+P +++ + NA++SGY+ RLEEA K+FE +K + ++++ M+ GY K +
Sbjct: 110 NLYREIPAKWREPVCSNAMISGYLKVGRLEEAIKVFEGTVEK-DVVSWSSMVDGYCKKGR 168
Query: 354 MDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSV 533
+ +A +LF M VRNVV+WTSM+ GY + G+F+ + M+R +EVN +T T +
Sbjct: 169 IFEARELFNMMPVRNVVTWTSMIDGYMNVGFFENGFSLFLSMRR-VIEVNPLTLTIMFEA 227
Query: 534 C 536
C
Sbjct: 228 C 228
Score = 78.2 bits (191), Expect = 1e-12
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 45/168 (26%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITY-------- 317
K F MP KD ++W A++SG+V N EEA F +M K N++T+
Sbjct: 333 KGIQLFKIMPEKDDVAWTAVISGFVSNGEYEEAFLWFIEMLKKAVKPNSLTFSSMLTASA 392
Query: 318 ---------------------------NIMIGGYTKNNQMDKALQLFESMRVRNVVSWTS 416
N ++ Y+K + +A Q+F S+ N++S+ S
Sbjct: 393 SLATLNQGLQIHAHVEKMDVQFDLSIRNSLVSMYSKCGNIAEAYQVFTSINAPNIISFNS 452
Query: 417 MVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFT-------CIVSVCA 539
M++G+S NG+ +EAL+ + +M++E E N++TF C+ +CA
Sbjct: 453 MITGFSQNGHGEEALDLFSKMRKENQEPNEITFLDYLEKRFCLFGICA 500
Score = 73.9 bits (180), Expect = 2e-11
Identities = 37/101 (36%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Frame = +3
Query: 180 NFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQM- 356
+ F+ MP+K+VI+ ++++ Y N ++ +A K+F++M ++ A TYN MI Y +N+ M
Sbjct: 16 SIFNRMPHKNVITHTSMLTAYAKNGQIAKAKKLFDEMPERTTA-TYNAMITAYIRNSCMV 74
Query: 357 DKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRM 479
D+A LF M RN VS+ +M++G+ G F++A YR +
Sbjct: 75 DEAFSLFSRMSERNAVSYGAMITGFLKAGMFEKAENLYREI 115
Score = 63.5 bits (153), Expect = 3e-08
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVND-RLEEAAKIFEKMGDKKNAITYN--------- 320
K F EMP + ++NA+++ Y+ N ++EA +F +M ++ NA++Y
Sbjct: 44 KAKKLFDEMPERTTATYNAMITAYIRNSCMVDEAFSLFSRMSER-NAVSYGAMITGFLKA 102
Query: 321 ------------------------IMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSG 428
MI GY K ++++A+++FE ++VVSW+SMV G
Sbjct: 103 GMFEKAENLYREIPAKWREPVCSNAMISGYLKVGRLEEAIKVFEGTVEKDVVSWSSMVDG 162
Query: 429 YSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
Y G EA E + M N VT+T ++ N+ E
Sbjct: 163 YCKKGRIFEARELFNMMPVR----NVVTWTSMIDGYMNVGFFE 201
>ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 728
Score = 93.2 bits (230), Expect(2) = 3e-24
Identities = 46/123 (37%), Positives = 79/123 (64%), Gaps = 1/123 (0%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F E+ + +S+N ++ GY ++ + E++ ++FEKM + N + N MI Y+KN ++D+A
Sbjct: 331 FYELRETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPE-NLTSLNTMISVYSKNGELDEA 389
Query: 366 LQLFESMR-VRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCAN 542
++LF+ + RN VSW SM+SGY NG +KEAL Y M+R V+ ++ TF+ + C+
Sbjct: 390 VKLFDKTKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACSC 449
Query: 543 LAA 551
L +
Sbjct: 450 LCS 452
Score = 44.7 bits (104), Expect(2) = 3e-24
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +2
Query: 5 PNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQF 184
PNE TL + +G L + +HGL I+ GLD + +IG + + YC C+ +D+A +
Sbjct: 239 PNEFTLDCVVRVCARLGVLRAGKVVHGLCIKGGLDFDNSIGGAVTEFYCGCEAIDDAKRV 298
Query: 185 F 187
+
Sbjct: 299 Y 299
Score = 75.9 bits (185), Expect(2) = 2e-13
Identities = 40/102 (39%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Frame = +3
Query: 258 LEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGYS- 434
+ EA +FE++ D N + +++M+ GY K + MD A+ +FE M VR+VV+WT+++SGY+
Sbjct: 158 IREAEVVFEELRDG-NQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAK 216
Query: 435 -DNGYFKEALEFYRRMKR-EKVEVNKVTFTCIVSVCANLAAL 554
++G + AL+ + M+R +V N+ T C+V VCA L L
Sbjct: 217 REDG-CERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVL 257
Score = 25.4 bits (54), Expect(2) = 2e-13
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +2
Query: 8 NESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQFF 187
NE + + + A G + +H L+++ G + +G+ L+ C G+ EA F
Sbjct: 106 NEVSFSAVLSACARSGSFLLGKQVHSLLLKSGYERFGLVGSALLYFCVHCCGIREAEVVF 165
Score = 61.2 bits (147), Expect = 2e-07
Identities = 32/79 (40%), Positives = 47/79 (59%)
Frame = +3
Query: 303 NAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMK 482
N I+ NI I K ++++A LF+ M R V SW +M+SGYS G + EAL M
Sbjct: 40 NVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSFMH 99
Query: 483 REKVEVNKVTFTCIVSVCA 539
R V +N+V+F+ ++S CA
Sbjct: 100 RSCVALNEVSFSAVLSACA 118
>ref|XP_004301025.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Fragaria vesca subsp. vesca]
Length = 568
Score = 102 bits (253), Expect(2) = 5e-24
Identities = 47/120 (39%), Positives = 80/120 (66%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F M ++ ISWNA++ GYV + ++ A +F++M ++ + +++ M+ GYTKN MD+A
Sbjct: 206 FEGMQGRNAISWNAMIVGYVNSGDVDSARDVFDRMPER-DGVSWTTMLVGYTKNGFMDRA 264
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
LF+ MR R+++ WT+M+SGYS +G EAL +RRM++ V+ ++ T T ++S A L
Sbjct: 265 RGLFDEMRERSLICWTAMISGYSQSGRASEALSVFRRMEKSGVKPDEFTMTAVISALAQL 324
Score = 35.0 bits (79), Expect(2) = 5e-24
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 62 ECCRGI--HGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQFF 187
+ C G+ HG V++ G + N LID Y KC GL +A + F
Sbjct: 131 DVCGGVEVHGRVVKTGFGVCVPVSNALIDMYGKCGGLGDARKVF 174
>emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 85.5 bits (210), Expect(2) = 6e-24
Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F+ M + +S+N ++ GY V +++++ ++FEKM + + N MI Y++N ++DKA
Sbjct: 361 FNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKM-PCRTIFSSNTMISVYSRNGEIDKA 419
Query: 366 LQLFESMR-VRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCAN 542
L+LFE + ++ V+W SM+SGY +G +EAL+ Y M R ++ + TF+ + C+
Sbjct: 420 LELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSC 479
Query: 543 LAALE 557
L +L+
Sbjct: 480 LGSLQ 484
Score = 51.2 bits (121), Expect(2) = 6e-24
Identities = 22/59 (37%), Positives = 39/59 (66%)
Frame = +2
Query: 5 PNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQ 181
PNE T + A G +G L R +HGL+++ GL+ + +IG L++ YC+C+ +D+A++
Sbjct: 270 PNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALR 328
Score = 74.7 bits (182), Expect = 1e-11
Identities = 39/102 (38%), Positives = 58/102 (56%)
Frame = +3
Query: 249 NDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSG 428
+ RL+E + I+ NI I Y K +++D A QLF+ M R VVSW +M+S
Sbjct: 53 HQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISS 112
Query: 429 YSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAAL 554
YS +G F EAL M R +++++ TF+ ++SVCA L L
Sbjct: 113 YSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCL 154
Score = 71.2 bits (173), Expect = 2e-10
Identities = 38/103 (36%), Positives = 60/103 (58%)
Frame = +3
Query: 222 NAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNV 401
N+++ G + R+E+A +F M + N ++YN+MI GY QMD + +LFE M R +
Sbjct: 342 NSLIEGLISMGRIEDAELVFNGMTEM-NPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTI 400
Query: 402 VSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVS 530
S +M+S YS NG +ALE + K EK + VT+ ++S
Sbjct: 401 FSSNTMISVYSRNGEIDKALELFEETKNEK---DPVTWNSMIS 440
Score = 70.9 bits (172), Expect = 2e-10
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Frame = +3
Query: 222 NAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNV 401
+A++ Y + EA ++F+ + ++N + +++M+ GY N MD AL +F M R+V
Sbjct: 177 SALLYFYASCFEIGEARRVFDVLV-RRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDV 235
Query: 402 VSWTSMVSGYSDNG-YFKEALEFYRRMKRE-KVEVNKVTFTCIVSVCANLAAL 554
V+WT+++SG+S NG +ALE +R M R + N+ TF C+V C L L
Sbjct: 236 VAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGIL 288
>gb|EOX93361.1| Tetratricopeptide repeat-like superfamily protein, putative
[Theobroma cacao]
Length = 747
Score = 115 bits (288), Expect = 7e-24
Identities = 54/127 (42%), Positives = 86/127 (67%)
Frame = +3
Query: 177 CNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQM 356
C F+++ +D I WN +++GYV R+++A +F+ M +KK+ +T+N MI GY + +M
Sbjct: 346 CLVFNDIAARDTICWNTMIAGYVQMGRMDKALSLFKDM-EKKDLVTWNTMIIGYAQIGEM 404
Query: 357 DKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVC 536
DKA+++FE M+VRNVVSW S+++G+ NG +AL ++ M E + TF C +S C
Sbjct: 405 DKAVKIFEEMKVRNVVSWNSLITGFLQNGLSFDALNSFKLMAHEGTIPDHSTFACGLSAC 464
Query: 537 ANLAALE 557
ANLAAL+
Sbjct: 465 ANLAALQ 471
Score = 84.7 bits (208), Expect = 1e-14
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Frame = +3
Query: 171 KQCNFFSEMPYK-DVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKN 347
K F +P+K DV WN ++ GY R EA ++F++M +N +++N+M+ GYT+N
Sbjct: 126 KARELFDSLPHKRDVACWNVMIGGYGKKGRFIEAKRLFDEM-PVRNVVSWNLMLSGYTRN 184
Query: 348 NQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTC 521
+M + F+ M +R+VVSW MV G+++ G A EF+ ++ V V+ VT C
Sbjct: 185 GEMHLGREFFDGMEIRDVVSWNLMVDGFAEVGDLDSAWEFFGKIPNPNV-VSWVTMLC 241
Score = 81.6 bits (200), Expect = 1e-13
Identities = 38/99 (38%), Positives = 60/99 (60%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F MP +D SW +++ + LE+A ++F+ + K++ +N+MIGGY K + +A
Sbjct: 100 FVRMPKRDRFSWTLMITCFTREGELEKARELFDSLPHKRDVACWNVMIGGYGKKGRFIEA 159
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMK 482
+LF+ M VRNVVSW M+SGY+ NG EF+ M+
Sbjct: 160 KRLFDEMPVRNVVSWNLMLSGYTRNGEMHLGREFFDGME 198
Score = 76.3 bits (186), Expect = 5e-12
Identities = 35/91 (38%), Positives = 61/91 (67%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F +MP K++ SWNA++ YV + ++EEAA++F +M K++++++ +MI GY Q+D A
Sbjct: 256 FDQMPSKNIASWNAMIGAYVKDFQIEEAARLFREM-PKRDSVSWTMMIDGYVHVGQLDNA 314
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEA 458
+L M +++V+ T+M+SGY N EA
Sbjct: 315 RELLNQMPYKSIVAQTAMLSGYIKNKRMGEA 345
Score = 73.6 bits (179), Expect = 3e-11
Identities = 32/102 (31%), Positives = 68/102 (66%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
FS M +++ +++N+++S + N ++++A ++F+KM KKN +++N MI GY ++++D+A
Sbjct: 38 FSGMTHRNTVTYNSMISAFSKNGKIDDARQLFDKM-PKKNLVSWNTMIAGYLHHDKVDEA 96
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREK 491
QLF M R+ SWT M++ ++ G ++A E + + ++
Sbjct: 97 YQLFVRMPKRDRFSWTLMITCFTREGELEKARELFDSLPHKR 138
Score = 72.4 bits (176), Expect = 7e-11
Identities = 36/104 (34%), Positives = 60/104 (57%)
Frame = +3
Query: 183 FFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDK 362
FF ++P +V+SW ++ + +L EA ++F++M KN ++N MIG Y K+ Q+++
Sbjct: 224 FFGKIPNPNVVSWVTMLCAFGRRGKLLEARRLFDQM-PSKNIASWNAMIGAYVKDFQIEE 282
Query: 363 ALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
A +LF M R+ VSWT M+ GY G A E +M + +
Sbjct: 283 AARLFREMPKRDSVSWTMMIDGYVHVGQLDNARELLNQMPYKSI 326
Score = 68.2 bits (165), Expect = 1e-09
Identities = 30/103 (29%), Positives = 58/103 (56%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F EMP ++V+SWN ++SGY N + + F+ M + ++ +++N+M+ G+ + +D A
Sbjct: 163 FDEMPVRNVVSWNLMLSGYTRNGEMHLGREFFDGM-EIRDVVSWNLMVDGFAEVGDLDSA 221
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
+ F + NVVSW +M+ + G EA + +M + +
Sbjct: 222 WEFFGKIPNPNVVSWVTMLCAFGRRGKLLEARRLFDQMPSKNI 264
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 222 NAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNV 401
N ++ + ++EEA +IF M +N +TYN MI ++KN ++D A QLF+ M +N+
Sbjct: 19 NTNITQLAKSGKIEEAIQIFSGM-THRNTVTYNSMISAFSKNGKIDDARQLFDKMPKKNL 77
Query: 402 VSWTSMVSGYSDNGYFKEALEFYRRM-KREK 491
VSW +M++GY + EA + + RM KR++
Sbjct: 78 VSWNTMIAGYLHHDKVDEAYQLFVRMPKRDR 108
Score = 50.1 bits (118), Expect(2) = 4e-09
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITYNIMIGGYTKNNQM 356
F+++ DV+SWN++++GY +N +EA +++E+M G + +T+ ++ G + +
Sbjct: 512 FNDLHEVDVVSWNSMITGYTLNGHGKEAVQLYEQMVLKGVLPDHVTFIGVLSGCSHIGLV 571
Query: 357 DKALQLFESMRVRNVVSWTSMVSGYS-------DNGYFKEALEFYRRMKREKVEVNKVTF 515
DK L+LF+ M + S +V Y+ G EA E R + K++ N +
Sbjct: 572 DKGLKLFKCM--TEIFSIEPLVEHYACIVDMLGRAGMLYEAFEVVRGL---KIKANAGIW 626
Query: 516 TCIVSVC 536
++S C
Sbjct: 627 GALLSAC 633
Score = 36.6 bits (83), Expect(2) = 4e-09
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 5 PNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQF 184
P+ ST A A ++ L+ + +H +V++ G N+ +GN LI Y KC + A Q
Sbjct: 452 PDHSTFACGLSACANLAALQVGKQMHNMVLKTGYVNNSFVGNALITMYAKCGRIFYA-QL 510
Query: 185 FFRD 196
F D
Sbjct: 511 IFND 514
Score = 66.6 bits (161), Expect = 4e-09
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 38/167 (22%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFE---------------------- 284
K F EM ++V+SWN++++G++ N +A F+
Sbjct: 406 KAVKIFEEMKVRNVVSWNSLITGFLQNGLSFDALNSFKLMAHEGTIPDHSTFACGLSACA 465
Query: 285 ----------------KMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTS 416
K G N+ N +I Y K ++ A +F + +VVSW S
Sbjct: 466 NLAALQVGKQMHNMVLKTGYVNNSFVGNALITMYAKCGRIFYAQLIFNDLHEVDVVSWNS 525
Query: 417 MVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
M++GY+ NG+ KEA++ Y +M + V + VTF ++S C+++ ++
Sbjct: 526 MITGYTLNGHGKEAVQLYEQMVLKGVLPDHVTFIGVLSGCSHIGLVD 572
>gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 100 bits (248), Expect(2) = 8e-24
Identities = 47/124 (37%), Positives = 82/124 (66%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F +MP +DV+SWNA+++GYV N +E+A K+F+++ K++ IT+N M+ GY + ++ A
Sbjct: 221 FDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEI-PKRDVITWNTMMAGYAQCGDVENA 279
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
++LFE M +N+VSW +M++GY NG KEA + ++ M E N +++ ++S A
Sbjct: 280 VELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMP----ERNVISWNAVISGFAQN 335
Query: 546 AALE 557
+E
Sbjct: 336 GQVE 339
Score = 36.2 bits (82), Expect(2) = 8e-24
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 2 RPNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQ 181
+PN T A + PA D LE H +++ G + N +GN L+D Y K ++ A +
Sbjct: 163 QPNHFTFASILPACTD---LEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARE 219
Query: 182 FF 187
F
Sbjct: 220 LF 221
Score = 110 bits (274), Expect = 3e-22
Identities = 50/124 (40%), Positives = 87/124 (70%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F +MP ++++SWN +++GYV N ++EA K+F+ M ++ N I++N +I G+ +N Q+++A
Sbjct: 283 FEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPER-NVISWNAVISGFAQNGQVEEA 341
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
L+LF++M NVVSW +M++GYS NG + AL+ + +M+ ++ N TF ++ CA L
Sbjct: 342 LKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAAL 401
Query: 546 AALE 557
A LE
Sbjct: 402 AVLE 405
Score = 71.6 bits (174), Expect = 1e-10
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 38/162 (23%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM------------------------- 290
F MP +V+SWNA+++GY N + E A K+F +M
Sbjct: 345 FKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVL 404
Query: 291 -------------GDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGY 431
G + + + N ++G Y K ++ A ++F+ MR ++ S ++M+ GY
Sbjct: 405 EQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGY 464
Query: 432 SDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
+ NG KE+LE + +M+ ++ ++VTF ++S C + ++
Sbjct: 465 AINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVD 506
Score = 63.9 bits (154), Expect = 3e-08
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 35/138 (25%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGD---KKNAITY------------- 317
F EMP K+V+SW A+++ Y ++ +EA F +M D + N T+
Sbjct: 123 FDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVL 182
Query: 318 --------------NIMIGG-----YTKNNQMDKALQLFESMRVRNVVSWTSMVSGYSDN 440
N+ +G Y K ++ A +LF+ M R+VVSW +M++GY N
Sbjct: 183 GEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQN 242
Query: 441 GYFKEALEFYRRMKREKV 494
G ++AL+ ++ + + V
Sbjct: 243 GLIEDALKLFQEIPKRDV 260
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/79 (34%), Positives = 48/79 (60%)
Frame = +3
Query: 318 NIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVE 497
N ++ Y K + +A ++F+ M V+NVVSWT+M++ Y+ + + +EAL F+ M+ ++
Sbjct: 104 NKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQ 163
Query: 498 VNKVTFTCIVSVCANLAAL 554
N TF I+ C +L L
Sbjct: 164 PNHFTFASILPACTDLEVL 182
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 2 RPNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQ 181
+PN T A + PA + LE H +VI+ G + +GN L+ Y KC +++A +
Sbjct: 385 KPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARK 444
Query: 182 FFFR 193
F R
Sbjct: 445 VFDR 448
Score = 33.5 bits (75), Expect(2) = 3e-06
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITYNIMIGGYTKNNQM 356
F M +D S +A++ GY +N +E+ ++FE+M G K + +T+ ++ +
Sbjct: 446 FDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLV 505
Query: 357 DKALQLFESM 386
D+ Q F+ M
Sbjct: 506 DEGRQYFDIM 515
>gb|EOX94498.1| Basic helix-loop-helix DNA-binding superfamily protein [Theobroma
cacao]
Length = 600
Score = 105 bits (262), Expect(2) = 1e-23
Identities = 49/125 (39%), Positives = 79/125 (63%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F EMP +DV +W +VSG++ L + ++F++M ++ N T+N MI GY + ++ A
Sbjct: 204 FDEMPDRDVFAWTTMVSGFLKAGDLVSSRRLFDEMPER-NTATWNAMIDGYARVGDVESA 262
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
F M V++++SWTSM++ YS N F+EAL + M+R KV ++VT ++S CA+L
Sbjct: 263 ELFFNQMPVKDIISWTSMINCYSKNKQFREALAVFEEMRRNKVSPDEVTMASVISACAHL 322
Query: 546 AALET 560
AL T
Sbjct: 323 GALNT 327
Score = 30.4 bits (67), Expect(2) = 1e-23
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 5 PNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQF 184
P+ T + L A G + +L +HG V ++G + + + L+D Y E+ +
Sbjct: 144 PSSFTFSSLVKACGLVSELGFGESVHGQVWKHGFESHVFVQTALVDFYANVGKFAESKRV 203
Query: 185 F 187
F
Sbjct: 204 F 204
Score = 76.6 bits (187), Expect = 4e-12
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 38/163 (23%)
Frame = +3
Query: 183 FFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKK-------------------- 302
FF++MP KD+ISW ++++ Y N + EA +FE+M K
Sbjct: 265 FFNQMPVKDIISWTSMINCYSKNKQFREALAVFEEMRRNKVSPDEVTMASVISACAHLGA 324
Query: 303 -------------NAITYNIMIGG-----YTKNNQMDKALQLFESMRVRNVVSWTSMVSG 428
N ++ IG Y K ++++L F +R +N+ W S++ G
Sbjct: 325 LNTGKEIHHYVMQNGFYLDVYIGSALVDMYAKCGSLERSLLAFFKLREKNLFCWNSVIEG 384
Query: 429 YSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
+ +GY +EAL + M+R V+ N VTF ++S C + +E
Sbjct: 385 LAVHGYAQEALAMFDSMERHHVKPNGVTFVSVLSACTHAGLVE 427
>ref|XP_004301846.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Fragaria vesca subsp. vesca]
Length = 892
Score = 99.8 bits (247), Expect(2) = 1e-23
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGD---KKNAITYNIMIGGYTKNNQM 356
F+ M KDV SWN+++ GY +A ++F KM + + NAITYN+MI GY +N
Sbjct: 403 FNVMSEKDVYSWNSMIGGYCQARYCGKAYELFMKMQESDVRPNAITYNVMITGYIQNGDA 462
Query: 357 DKALQLFESMR-----VRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTC 521
D+A+ LF+ M RN SW S+++GY+ G EAL +R+M+ V N VT
Sbjct: 463 DQAMDLFQMMERDGKVKRNTASWNSLIAGYAQLGEINEALRIFRKMQTFGVSPNAVTLLS 522
Query: 522 IVSVCANLAALE 557
I+ CA+LAA++
Sbjct: 523 ILPACASLAAMK 534
Score = 35.8 bits (81), Expect(2) = 1e-23
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 5 PNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQF 184
PN T+A A + L ++ ++ GL ++ +GN LID + KC L+ A Q
Sbjct: 343 PNGITIASAILACTSLKSLTKGLEVYAFAVKIGLTDDVLVGNSLIDMFSKCGDLEAAEQV 402
Query: 185 F 187
F
Sbjct: 403 F 403
Score = 82.8 bits (203), Expect = 5e-14
Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Frame = +3
Query: 183 FFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITYNIMIGGYTKNNQ 353
FF +M +D +SWN+IVSGY N EA ++ ++M G + +T+NI+I K+ Q
Sbjct: 231 FFDKMEVRDGVSWNSIVSGYCQNGDNVEARRLIDEMIRQGIEPGLVTWNILISSCNKSGQ 290
Query: 354 MDKALQLFESMR----VRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTC 521
D A++L + M + +V +WT+M+SG++ N +AL+ +++M V N +T
Sbjct: 291 CDVAMELMKKMESCGIIPDVYTWTAMISGFAQNNRTNQALDLWKKMILLGVLPNGITIAS 350
Query: 522 IVSVCANLAAL 554
+ C +L +L
Sbjct: 351 AILACTSLKSL 361
Score = 55.5 bits (132), Expect = 9e-06
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +3
Query: 318 NIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVE 497
N ++ Y K +++ A + F+ M VR+ VSW S+VSGY NG EA M R+ +E
Sbjct: 213 NALLAVYAKCGELESARRFFDKMEVRDGVSWNSIVSGYCQNGDNVEARRLIDEMIRQGIE 272
Query: 498 VNKVTFTCIVSVC 536
VT+ ++S C
Sbjct: 273 PGLVTWNILISSC 285
>ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product
[Vitis vinifera]
Length = 728
Score = 84.3 bits (207), Expect(2) = 1e-23
Identities = 42/124 (33%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F+ M + +S+N ++ GY V +++++ ++FEKM + + N MI Y++N ++DKA
Sbjct: 321 FNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKM-PCRTIFSSNTMISVYSRNGEIDKA 379
Query: 366 LQLFESMR-VRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCAN 542
L+LFE + ++ V+W SM+SGY +G +EAL+ Y M R ++ + TF+ + C+
Sbjct: 380 LELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSC 439
Query: 543 LAAL 554
L +L
Sbjct: 440 LGSL 443
Score = 51.2 bits (121), Expect(2) = 1e-23
Identities = 22/59 (37%), Positives = 39/59 (66%)
Frame = +2
Query: 5 PNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQ 181
PNE T + A G +G L R +HGL+++ GL+ + +IG L++ YC+C+ +D+A++
Sbjct: 230 PNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALR 288
Score = 74.7 bits (182), Expect = 1e-11
Identities = 39/102 (38%), Positives = 58/102 (56%)
Frame = +3
Query: 249 NDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSG 428
+ RL+E + I+ NI I Y K +++D A QLF+ M R VVSW +M+S
Sbjct: 13 HQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISS 72
Query: 429 YSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAAL 554
YS +G F EAL M R +++++ TF+ ++SVCA L L
Sbjct: 73 YSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCL 114
Score = 71.2 bits (173), Expect = 2e-10
Identities = 38/103 (36%), Positives = 60/103 (58%)
Frame = +3
Query: 222 NAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNV 401
N+++ G + R+E+A +F M + N ++YN+MI GY QMD + +LFE M R +
Sbjct: 302 NSLIEGLISMGRIEDAELVFNGMTEM-NPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTI 360
Query: 402 VSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVS 530
S +M+S YS NG +ALE + K EK + VT+ ++S
Sbjct: 361 FSSNTMISVYSRNGEIDKALELFEETKNEK---DPVTWNSMIS 400
Score = 70.9 bits (172), Expect = 2e-10
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Frame = +3
Query: 222 NAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNV 401
+A++ Y + EA ++F+ + ++N + +++M+ GY N MD AL +F M R+V
Sbjct: 137 SALLYFYASCFEIGEARRVFDVLV-RRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDV 195
Query: 402 VSWTSMVSGYSDNG-YFKEALEFYRRMKRE-KVEVNKVTFTCIVSVCANLAAL 554
V+WT+++SG+S NG +ALE +R M R + N+ TF C+V C L L
Sbjct: 196 VAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGIL 248
>ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial [Vitis vinifera]
Length = 744
Score = 100 bits (249), Expect(2) = 2e-23
Identities = 47/123 (38%), Positives = 81/123 (65%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F M KDV+SWNA+++GYV ND +EE +FEK +K+ I++ MI G++ +M K+
Sbjct: 394 FDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKT-QQKDVISWTTMITGFSNKGKMGKS 452
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
++LF M ++ ++WT+++SG+ NG ++EA+ ++ M R+ V N +T + ++S A L
Sbjct: 453 IELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGL 512
Query: 546 AAL 554
A L
Sbjct: 513 ATL 515
Score = 34.3 bits (77), Expect(2) = 2e-23
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 8 NESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQFF 187
N +TL + A + G+ + +HGLV + G + + +GN +I YC+ + EA + F
Sbjct: 335 NPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIF 394
Score = 88.2 bits (217), Expect = 1e-15
Identities = 44/114 (38%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Frame = +3
Query: 201 YKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFE 380
++D + NA++SGY+ RLEEA +IFE MG++ + I+++ M+ GY K ++ A +LFE
Sbjct: 235 WRDPVCSNALISGYLKVGRLEEATRIFEGMGER-DVISWSSMVDGYCKKGKIGHARELFE 293
Query: 381 SMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREK-VEVNKVTFTCIVSVCA 539
M RNVV+WT+M+ G+ G ++ + RM++E V+VN T T + C+
Sbjct: 294 RMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACS 347
Score = 76.6 bits (187), Expect = 4e-12
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +3
Query: 180 NFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQM- 356
+ FS MP+K+ ISW A+++ Y N + +A K+FEKM + A +YN MI YT++N M
Sbjct: 131 SIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTA-SYNAMITAYTRSNPMM 189
Query: 357 -DKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFY 470
+A +LF MR RN +S+ +M++G + G A E Y
Sbjct: 190 IGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELY 228
Score = 76.6 bits (187), Expect = 4e-12
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 38/167 (22%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIF----------------------- 281
K F MP +D I+W A++SG+V N EEA F
Sbjct: 451 KSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASA 510
Query: 282 ---------------EKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTS 416
KMG + + N ++ YTK + Q+F S+ N+VS+ S
Sbjct: 511 GLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNS 570
Query: 417 MVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
M++G++ NG+ +EALE + +M E + N++TF ++S C ++ LE
Sbjct: 571 MITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLE 617
Score = 67.0 bits (162), Expect = 3e-09
Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIF-EKMGDKKNAITYNIMIGGYTKNNQMDK 362
F+EM ++ IS+ A+++G ++ A +++ E + ++ + N +I GY K ++++
Sbjct: 197 FAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEE 256
Query: 363 ALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIV 527
A ++FE M R+V+SW+SMV GY G A E + RM E N VT+T ++
Sbjct: 257 ATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP----ERNVVTWTAMI 307
>emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 100 bits (249), Expect(2) = 2e-23
Identities = 47/123 (38%), Positives = 81/123 (65%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F M KDV+SWNA+++GYV ND +EE +FEK +K+ I++ MI G++ +M K+
Sbjct: 315 FDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKT-QQKDVISWTTMITGFSNKGKMGKS 373
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
++LF M ++ ++WT+++SG+ NG ++EA+ ++ M R+ V N +T + ++S A L
Sbjct: 374 IELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGL 433
Query: 546 AAL 554
A L
Sbjct: 434 ATL 436
Score = 34.3 bits (77), Expect(2) = 2e-23
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 8 NESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQFF 187
N +TL + A + G+ + +HGLV + G + + +GN +I YC+ + EA + F
Sbjct: 256 NPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIF 315
Score = 88.2 bits (217), Expect = 1e-15
Identities = 44/114 (38%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Frame = +3
Query: 201 YKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFE 380
++D + NA++SGY+ RLEEA +IFE MG++ + I+++ M+ GY K ++ A +LFE
Sbjct: 156 WRDPVCSNALISGYLKVGRLEEATRIFEGMGER-DVISWSSMVDGYCKKGKIGHARELFE 214
Query: 381 SMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREK-VEVNKVTFTCIVSVCA 539
M RNVV+WT+M+ G+ G ++ + RM++E V+VN T T + C+
Sbjct: 215 RMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACS 268
Score = 76.6 bits (187), Expect = 4e-12
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +3
Query: 180 NFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQM- 356
+ FS MP+K+ ISW A+++ Y N + +A K+FEKM + A +YN MI YT++N M
Sbjct: 52 SIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTA-SYNAMITAYTRSNPMM 110
Query: 357 -DKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFY 470
+A +LF MR RN +S+ +M++G + G A E Y
Sbjct: 111 IGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELY 149
Score = 76.6 bits (187), Expect = 4e-12
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 38/167 (22%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIF----------------------- 281
K F MP +D I+W A++SG+V N EEA F
Sbjct: 372 KSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASA 431
Query: 282 ---------------EKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTS 416
KMG + + N ++ YTK + Q+F S+ N+VS+ S
Sbjct: 432 GLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNS 491
Query: 417 MVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
M++G++ NG+ +EALE + +M E + N++TF ++S C ++ LE
Sbjct: 492 MITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLE 538
Score = 67.0 bits (162), Expect = 3e-09
Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIF-EKMGDKKNAITYNIMIGGYTKNNQMDK 362
F+EM ++ IS+ A+++G ++ A +++ E + ++ + N +I GY K ++++
Sbjct: 118 FAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEE 177
Query: 363 ALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIV 527
A ++FE M R+V+SW+SMV GY G A E + RM E N VT+T ++
Sbjct: 178 ATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP----ERNVVTWTAMI 228
>gb|EOY21263.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1
[Theobroma cacao] gi|508774008|gb|EOY21264.1|
Tetratricopeptide repeat (TPR)-like superfamily protein
isoform 1 [Theobroma cacao] gi|508774009|gb|EOY21265.1|
Tetratricopeptide repeat (TPR)-like superfamily protein
isoform 1 [Theobroma cacao]
Length = 768
Score = 113 bits (283), Expect = 3e-23
Identities = 54/129 (41%), Positives = 87/129 (67%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNN 350
K FF EMP K+ +SWNA+++GYV R++ A K+F+KM +N + N +I GY ++
Sbjct: 286 KAREFFEEMPEKNAVSWNAMIAGYVQCKRMDMARKLFDKM-PCRNVTSLNTIITGYAQSG 344
Query: 351 QMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVS 530
++ A +LF+ M R+ VSW +M++GY+ +GY +EAL + MKR+ +N+ +F C +S
Sbjct: 345 EIAHARELFDRMPRRDPVSWAAMIAGYAQSGYDEEALCLFVEMKRDGERLNRSSFACALS 404
Query: 531 VCANLAALE 557
CA++AALE
Sbjct: 405 TCAHIAALE 413
Score = 89.7 bits (221), Expect = 4e-16
Identities = 40/98 (40%), Positives = 69/98 (70%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F+ MP + +S+NA++SGY++ND+ E A +F++M ++ + +++N+MI G +NN + A
Sbjct: 74 FNSMPRRSSVSYNAMISGYLMNDKFELARNLFDEMPER-DLVSWNVMISGCVRNNNVAAA 132
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRM 479
+LFE M R+VVSW +M+SGY+ NG +A + + RM
Sbjct: 133 KELFEQMPERDVVSWNAMLSGYAQNGCVDKARKIFDRM 170
Score = 87.0 bits (214), Expect = 3e-15
Identities = 38/116 (32%), Positives = 74/116 (63%)
Frame = +3
Query: 180 NFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMD 359
N F EMP +D++SWN ++SG V N+ + A ++FE+M ++ + +++N M+ GY +N +D
Sbjct: 103 NLFDEMPERDLVSWNVMISGCVRNNNVAAAKELFEQMPER-DVVSWNAMLSGYAQNGCVD 161
Query: 360 KALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIV 527
KA ++F+ M +N +SW ++++ Y NG +EA + K + + V++ C++
Sbjct: 162 KARKIFDRMPTKNSISWNALLATYVQNGRMEEACTLF----ESKADWDLVSWNCLM 213
Score = 82.4 bits (202), Expect = 7e-14
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 30/150 (20%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDK----------------- 299
K F MP K+ ISWNA+++ YV N R+EEA +FE D
Sbjct: 162 KARKIFDRMPTKNSISWNALLATYVQNGRMEEACTLFESKADWDLVSWNCLMGGFVKTKR 221
Query: 300 -------------KNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGYSDN 440
++ I++N +I GY +N ++++A +LF VR+V +WT+MVSGY N
Sbjct: 222 FIDARRIFDRIPFRDKISWNTIITGYAQNGEIEEARRLFHESPVRDVFTWTAMVSGYVQN 281
Query: 441 GYFKEALEFYRRMKREKVEVNKVTFTCIVS 530
G +A EF+ M E N V++ +++
Sbjct: 282 GMVDKAREFFEEMP----EKNAVSWNAMIA 307
Score = 47.4 bits (111), Expect(2) = 1e-10
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Frame = +3
Query: 177 CNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITYNIMIGGYTKN 347
C+ F E+ KDV+SWN +++GY + +EA K+FE M G K + T ++ +
Sbjct: 451 CSAFEEIMEKDVVSWNTMIAGYARHGFGKEALKVFESMKAAGVKPDDTTMVGVLSACSHA 510
Query: 348 NQMDKALQLFESMR-----VRNVVSWTSMVSGYSDNGYFKEALEFYRRMKRE 488
+D+ + F M N +T MV G EAL+ R M E
Sbjct: 511 GLVDRGREYFYCMNQDYAIKANSRHYTCMVDLLGRAGRLDEALKLIRNMPFE 562
Score = 44.3 bits (103), Expect(2) = 1e-10
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +2
Query: 2 RPNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQ 181
R N S+ A I LE + +HG +++ G + + +GN L+ YCKC G++EA
Sbjct: 393 RLNRSSFACALSTCAHIAALEMGKQLHGRLVKAGYESGSFVGNALLLMYCKCGGIEEACS 452
Query: 182 FF 187
F
Sbjct: 453 AF 454
Score = 67.8 bits (164), Expect = 2e-09
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Frame = +3
Query: 171 KQCNFFSEMPY--KDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTK 344
K+ N+ P D+ WN +S ++ N +L+ A ++F M ++++++YN MI GY
Sbjct: 36 KKHNYNKPQPVVDSDIKQWNLAISTHMRNAQLDSALRVFNSM-PRRSSVSYNAMISGYLM 94
Query: 345 NNQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
N++ + A LF+ M R++VSW M+SG N A E + +M V
Sbjct: 95 NDKFELARNLFDEMPERDLVSWNVMISGCVRNNNVAAAKELFEQMPERDV 144
Score = 65.5 bits (158), Expect = 9e-09
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 38/162 (23%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITY------------- 317
F MP +D +SW A+++GY + EEA +F +M G++ N ++
Sbjct: 353 FDRMPRRDPVSWAAMIAGYAQSGYDEEALCLFVEMKRDGERLNRSSFACALSTCAHIAAL 412
Query: 318 ----------------------NIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGY 431
N ++ Y K +++A FE + ++VVSW +M++GY
Sbjct: 413 EMGKQLHGRLVKAGYESGSFVGNALLLMYCKCGGIEEACSAFEEIMEKDVVSWNTMIAGY 472
Query: 432 SDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
+ +G+ KEAL+ + MK V+ + T ++S C++ ++
Sbjct: 473 ARHGFGKEALKVFESMKAAGVKPDDTTMVGVLSACSHAGLVD 514
>ref|XP_004503293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cicer arietinum]
Length = 763
Score = 113 bits (283), Expect = 3e-23
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 44/183 (24%)
Frame = +3
Query: 141 MPIASAKAW-------------MKQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIF 281
MPI A +W ++ F E P +DV +W A+VSGYV N L+EA F
Sbjct: 227 MPIRDAISWNTMISGYAQDGDLLQARRLFDESPIRDVFTWTAMVSGYVQNGMLDEARNFF 286
Query: 282 EKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNV-------------------- 401
++M +KN I+YN MI GY ++ +MD A +LFE+M RN+
Sbjct: 287 DEM-PQKNEISYNAMIAGYVQSKKMDMARELFEAMPCRNISSWNTMITGYGQNGDIAQAR 345
Query: 402 -----------VSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLA 548
VSW ++++GY+ +G+++EAL + +KR+ +N+ TF C +S CA++A
Sbjct: 346 KLFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKRDGESLNRSTFGCALSTCADIA 405
Query: 549 ALE 557
ALE
Sbjct: 406 ALE 408
Score = 85.5 bits (210), Expect = 8e-15
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 30/145 (20%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFE---------------------KMGDKK 302
F MP+K+ ISWN +++ YV N R+EEA ++FE K+GD +
Sbjct: 162 FDNMPHKNSISWNGLLAAYVHNGRIEEACRLFESKLDWDLISWNCLMGGFVRRKKLGDAR 221
Query: 303 ---------NAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKE 455
+AI++N MI GY ++ + +A +LF+ +R+V +WT+MVSGY NG E
Sbjct: 222 WLFDQMPIRDAISWNTMISGYAQDGDLLQARRLFDESPIRDVFTWTAMVSGYVQNGMLDE 281
Query: 456 ALEFYRRMKREKVEVNKVTFTCIVS 530
A F+ M ++ N++++ +++
Sbjct: 282 ARNFFDEMPQK----NEISYNAMIA 302
Score = 83.2 bits (204), Expect = 4e-14
Identities = 36/114 (31%), Positives = 74/114 (64%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F +MP +D+ SWN +++GYV N RL +A ++F+ M D+ + +++N M+ GY ++ +D A
Sbjct: 100 FDQMPERDLFSWNVMLTGYVRNRRLGDARRLFDLMPDR-DVVSWNAMLSGYAQHGYVDDA 158
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIV 527
++F++M +N +SW +++ Y NG +EA R+ K++ + +++ C++
Sbjct: 159 REVFDNMPHKNSISWNGLLAAYVHNGRIEEAC----RLFESKLDWDLISWNCLM 208
Score = 82.4 bits (202), Expect = 7e-14
Identities = 36/98 (36%), Positives = 67/98 (68%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F+ MP + +S+NA++SGY+ N + A ++F++M ++ + ++N+M+ GY +N ++ A
Sbjct: 69 FNNMPRRSSVSYNAMISGYLRNSKFNLARELFDQMPER-DLFSWNVMLTGYVRNRRLGDA 127
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRM 479
+LF+ M R+VVSW +M+SGY+ +GY +A E + M
Sbjct: 128 RRLFDLMPDRDVVSWNAMLSGYAQHGYVDDAREVFDNM 165
Score = 73.2 bits (178), Expect = 4e-11
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 38/162 (23%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITY------------- 317
F MP +D +SW AI++GY + EEA +F ++ G+ N T+
Sbjct: 348 FDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKRDGESLNRSTFGCALSTCADIAAL 407
Query: 318 ----------------------NIMIGGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGY 431
N ++ Y K +D+A +FE + ++VVSW +M++GY
Sbjct: 408 ELGKQIHGQAVKTGYETGCFVGNALLAMYFKCGSIDEANDIFEGIEEKDVVSWNTMLAGY 467
Query: 432 SDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
+ +G+ K+AL + MK V+ +++T ++S C++ L+
Sbjct: 468 ARHGFGKQALMIFESMKTAGVKPDEITMVGVLSACSHTGLLD 509
Score = 42.7 bits (99), Expect(2) = 1e-08
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Frame = +3
Query: 180 NFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITYNIMIGGYTKNN 350
+ F + KDV+SWN +++GY + ++A IFE M G K + IT ++ +
Sbjct: 447 DIFEGIEEKDVVSWNTMLAGYARHGFGKQALMIFESMKTAGVKPDEITMVGVLSACSHTG 506
Query: 351 QMDKALQLFESMRVRNVVS-----WTSMVSGYSDNGYFKEALEFYRRMKRE 488
+D+ + F SM+ V+ +T M+ G +EA + R M E
Sbjct: 507 LLDRGTEYFYSMQKDYGVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 557
Score = 42.0 bits (97), Expect(2) = 1e-08
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 8 NESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQFF 187
N ST DI LE + IHG ++ G + +GN L+ Y KC +DEA F
Sbjct: 390 NRSTFGCALSTCADIAALELGKQIHGQAVKTGYETGCFVGNALLAMYFKCGSIDEANDIF 449
>ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 907
Score = 113 bits (283), Expect = 3e-23
Identities = 52/124 (41%), Positives = 86/124 (69%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
FS++ +D I WN++++GY + R+ EA +F +M KNA+++N MI GY + +MD+A
Sbjct: 351 FSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQM-PVKNAVSWNTMISGYAQAGEMDRA 409
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
++FE+M VRNV+SW S+++G+ NG + +AL+ M +E + ++ TF C +S CANL
Sbjct: 410 TEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANL 469
Query: 546 AALE 557
AAL+
Sbjct: 470 AALQ 473
Score = 84.0 bits (206), Expect = 2e-14
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Frame = +3
Query: 171 KQCNFFSEMPYK-DVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKN 347
K F +P K D WNA+++GY R ++A K+FEKM K+ ++YN M+ GYT+N
Sbjct: 128 KARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKM-PVKDLVSYNSMLAGYTQN 186
Query: 348 NQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTC 521
+M A++ FE M RNVVSW MV+G+ +N A E + ++ + V+ VT C
Sbjct: 187 GKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIP-DPNAVSWVTMLC 243
Score = 80.9 bits (198), Expect = 2e-13
Identities = 36/103 (34%), Positives = 66/103 (64%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F +MP KD++S+N++++GY N ++ A K FE+M ++ N +++N+M+ G+ N + A
Sbjct: 165 FEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAER-NVVSWNLMVAGFVNNCDLGSA 223
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
+LFE + N VSW +M+ G++ +G EA + + RM + V
Sbjct: 224 WELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNV 266
Score = 80.5 bits (197), Expect = 3e-13
Identities = 38/124 (30%), Positives = 71/124 (57%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F E PYKD +SW +++GYV +L+EA +++ +M K+ ++ G +N ++D+A
Sbjct: 289 FKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQM-PYKDVAAKTALMSGLIQNGRIDEA 347
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
Q+F + R+ + W SM++GY +G EAL +R+M + N V++ ++S A
Sbjct: 348 SQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVK----NAVSWNTMISGYAQA 403
Query: 546 AALE 557
++
Sbjct: 404 GEMD 407
Score = 78.6 bits (192), Expect = 1e-12
Identities = 38/103 (36%), Positives = 61/103 (59%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F M +D SW +++ Y LE+A ++FE + DK + +N MI GY K + D A
Sbjct: 102 FDLMAERDNFSWALMITCYTRKGMLEKARELFELVPDKLDTACWNAMIAGYAKKGRFDDA 161
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
++FE M V+++VS+ SM++GY+ NG A++F+ RM V
Sbjct: 162 EKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNV 204
Score = 75.1 bits (183), Expect = 1e-11
Identities = 35/103 (33%), Positives = 65/103 (63%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F ++P + +SW ++ G+ + ++ EA K+F++M KN +++N MI Y ++ Q+D+A
Sbjct: 227 FEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRM-PCKNVVSWNAMIAAYVQDLQIDEA 285
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
++LF+ ++ VSWT+M++GY G EA E Y +M + V
Sbjct: 286 VKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDV 328
Score = 67.8 bits (164), Expect = 2e-09
Identities = 31/95 (32%), Positives = 62/95 (65%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
FS + +K+ ++N++V+ + N R+ +A ++F+KM ++N +++N MI GY NN +++A
Sbjct: 40 FSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMS-QRNLVSWNTMIAGYLHNNMVEEA 98
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFY 470
+LF+ M R+ SW M++ Y+ G ++A E +
Sbjct: 99 HKLFDLMAERDNFSWALMITCYTRKGMLEKARELF 133
Score = 60.5 bits (145), Expect = 3e-07
Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 51/191 (26%)
Frame = +3
Query: 123 LEMCLSMPIASAKAWM-------------KQCNFFSEMPYKDVISWNAIVSGYVVNDRLE 263
L + MP+ +A +W + F M ++VISWN++++G++ N
Sbjct: 379 LNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYL 438
Query: 264 EAAKIFEKMGDK--------------------------------------KNAITYNIMI 329
+A K MG + + N +I
Sbjct: 439 DALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALI 498
Query: 330 GGYTKNNQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKV 509
Y K + A ++F+ + +++SW S++SGY+ NGY EA + +M E ++V
Sbjct: 499 AMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEV 558
Query: 510 TFTCIVSVCAN 542
TF ++S C++
Sbjct: 559 TFIGMLSACSH 569
Score = 59.7 bits (143), Expect = 5e-07
Identities = 31/92 (33%), Positives = 53/92 (57%)
Frame = +3
Query: 204 KDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFES 383
K+V + N + +++EA ++F + K +A TYN M+ + KN ++ A QLF+
Sbjct: 15 KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHA-TYNSMVTVFAKNGRVSDARQLFDK 73
Query: 384 MRVRNVVSWTSMVSGYSDNGYFKEALEFYRRM 479
M RN+VSW +M++GY N +EA + + M
Sbjct: 74 MSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLM 105
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITYNIMIGGYTKNNQM 356
F ++ D+ISWN+++SGY +N EA FE+M G + +T+ M+ +
Sbjct: 514 FKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLT 573
Query: 357 DKALQLFESMRVRNVVS-----WTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTC 521
++ + LF+ M + ++ +V G +EA R M KV+ N +
Sbjct: 574 NQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGM---KVKANAGLWGS 630
Query: 522 IVSVC 536
+++ C
Sbjct: 631 LLAAC 635
Score = 36.6 bits (83), Expect(2) = 1e-06
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 2 RPNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQ 181
+P++ST A + ++ L+ + +H L+++ G + + N LI Y KC G+ A +
Sbjct: 453 KPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEK 512
Query: 182 FF 187
F
Sbjct: 513 VF 514
>ref|XP_006306877.1| hypothetical protein CARUB_v10008432mg, partial [Capsella rubella]
gi|565498478|ref|XP_006306878.1| hypothetical protein
CARUB_v10008432mg, partial [Capsella rubella]
gi|482575588|gb|EOA39775.1| hypothetical protein
CARUB_v10008432mg, partial [Capsella rubella]
gi|482575589|gb|EOA39776.1| hypothetical protein
CARUB_v10008432mg, partial [Capsella rubella]
Length = 727
Score = 99.8 bits (247), Expect(2) = 5e-23
Identities = 45/123 (36%), Positives = 84/123 (68%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F M KD +SWN++++G V +++ EA ++FEKM DK + +++ MI G+++ ++ K
Sbjct: 336 FGVMNNKDTVSWNSLITGLVQREQISEAYELFEKMPDK-DLVSWTDMIKGFSRKGEISKC 394
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
++LF M ++ V+WT+M+S + NGY++EAL ++ +M +++V N TF+ ++S A+L
Sbjct: 395 VELFRMMPEKDGVTWTAMISAFVSNGYYEEALCWFLKMLQKEVRPNSYTFSSVLSATASL 454
Query: 546 AAL 554
A L
Sbjct: 455 ADL 457
Score = 33.9 bits (76), Expect(2) = 5e-23
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 2 RPNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQ 181
R N +TLA + A D + IHGLV + L+ + +GN LI Y K + EA
Sbjct: 275 RVNSNTLAVMFKACRDFSRYREGSQIHGLVSRMPLEFDLFLGNSLISMYSKLGYMGEAKA 334
Query: 182 FF 187
F
Sbjct: 335 VF 336
Score = 82.8 bits (203), Expect = 5e-14
Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Frame = +3
Query: 186 FSEMP--YKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMD 359
++E P ++D ++ N ++SGY+ + EA ++F+ M K+ ++Y+ MI GY K ++
Sbjct: 170 YAETPVKFRDPVASNVLLSGYLRAGKWNEAVRVFQGMAVKE-VVSYSSMIDGYCKMGRLA 228
Query: 360 KALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKRE-KVEVNKVTFTCIVSVC 536
A+ LF+ M RNV++WT+M+ GY G+F++ + RM+RE V VN T + C
Sbjct: 229 DAITLFDGMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRREGDVRVNSNTLAVMFKAC 288
Query: 537 ANLA 548
+ +
Sbjct: 289 RDFS 292
Score = 68.9 bits (167), Expect = 8e-10
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 39/174 (22%)
Frame = +3
Query: 153 SAKAWMKQC-NFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKK---NAITY- 317
S K + +C F MP KD ++W A++S +V N EEA F KM K+ N+ T+
Sbjct: 386 SRKGEISKCVELFRMMPEKDGVTWTAMISAFVSNGYYEEALCWFLKMLQKEVRPNSYTFS 445
Query: 318 ----------------------------------NIMIGGYTKNNQMDKALQLFESMRVR 395
N ++ Y K + A ++F +
Sbjct: 446 SVLSATASLADLIEGLQIHGRVVKMNMGNDLSVQNSLVSMYCKCGNTNDAYKIFLCINEP 505
Query: 396 NVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
N+VS+ +M+SG+S NG+ KEAL+ + ++ + E N VTF I+S C ++ ++
Sbjct: 506 NIVSYNTMISGFSYNGFGKEALKLFSILESTEKEPNGVTFLAILSACVHVGYVD 559
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNN-QMDK 362
F +M ++ ++SWNA++S Y N ++ +A ++F++M + +YN M+ KN + K
Sbjct: 76 FRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATT-SYNAMVTAMIKNKCDLGK 134
Query: 363 ALQLFESMRVRNVVSWTSMVSGYSDNGYFKEA 458
+ +LF S+ +N VS+ SM++G+ G F EA
Sbjct: 135 SYELFCSIPEKNAVSYASMITGFVRAGMFDEA 166
>ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517031|gb|AES98654.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 887
Score = 89.7 bits (221), Expect(2) = 8e-23
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Frame = +3
Query: 180 NFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKK---NAITYNIMIGGYTKNN 350
+ F M +DV SWN+I+ GY +A ++F KM + N IT+NIMI GY ++
Sbjct: 410 HIFDMMSERDVYSWNSIIGGYFQAGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSG 469
Query: 351 QMDKALQLFESMRV-----RNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTF 515
D+AL LF+S+ RN SW S++SG+ +G +AL+ +R M+ + N VT
Sbjct: 470 AEDQALDLFKSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTI 529
Query: 516 TCIVSVCANLAA 551
I+ VCANL A
Sbjct: 530 LSILPVCANLVA 541
Score = 43.1 bits (100), Expect(2) = 8e-23
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 8 NESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQFF 187
N T+A A + L IH + ++ L +N +GN LID YCKC L A F
Sbjct: 353 NNITIASAASACAALKSLSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIF 412
Score = 80.5 bits (197), Expect = 3e-13
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Frame = +3
Query: 81 MV*SYNMVWMRMLQLEMCLSMPIASAKAWMKQC--NFFSEMPYKDVISWNAIVSGYVVND 254
MV M W + L+ S+ AK C F M +D ++WNA++SG+ N
Sbjct: 208 MVIRRGMRWSKHLRN----SIMAVYAKCGEMDCAKKIFDCMDERDSVAWNAMISGFCQNG 263
Query: 255 RLEEAAKIFEKM---GDKKNAITYNIMIGGYTKNNQMDKALQLFESMR----VRNVVSWT 413
+ +A K F+ M G + + +T+NI+I Y + D A+ L M +V +WT
Sbjct: 264 EIGQAQKYFDAMQKDGVEPSLVTWNILISCYNQLGHCDLAIDLMRKMEWFGIAPDVYTWT 323
Query: 414 SMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAAL 554
SM+SG++ G AL+ + M VE N +T S CA L +L
Sbjct: 324 SMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASACAALKSL 370
>ref|XP_006362392.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like isoform X1 [Solanum tuberosum]
gi|565393459|ref|XP_006362393.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g02750-like isoform X2 [Solanum tuberosum]
gi|565393461|ref|XP_006362394.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g02750-like isoform X3 [Solanum tuberosum]
gi|565393463|ref|XP_006362395.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g02750-like isoform X4 [Solanum tuberosum]
gi|565393465|ref|XP_006362396.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g02750-like isoform X5 [Solanum tuberosum]
Length = 742
Score = 111 bits (278), Expect = 1e-22
Identities = 51/122 (41%), Positives = 82/122 (67%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F +DV+ WN ++ GY R++EA +FEKM + K+ + +N MI GY + QM+KA
Sbjct: 344 FDRTATRDVVCWNTMIVGYAQCGRIDEAFGLFEKM-EPKSIVVWNTMIAGYAQVGQMEKA 402
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
L++FE+M RNV+SW S++SGY+ NG++ +AL+++ M R+ + + TF +S C+NL
Sbjct: 403 LEIFENMGERNVISWNSLISGYTQNGFYVDALKYFITMTRDGKKPDHSTFASTLSSCSNL 462
Query: 546 AA 551
AA
Sbjct: 463 AA 464
Score = 85.5 bits (210), Expect = 8e-15
Identities = 38/108 (35%), Positives = 65/108 (60%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNN 350
K C F +MP +D ++ +++ Y + LE+A +FE + DK N +N MI GY K
Sbjct: 90 KACELFDKMPQRDHFTYALMITCYARSGELEKARDVFELLPDKSNIACWNAMITGYAKAG 149
Query: 351 QMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
++D A ++F+ M +N+VSW SM+ GY+ NG + L+F+ ++ + V
Sbjct: 150 RLDDARKMFDGMPAKNLVSWNSMLLGYTQNGEMQFGLKFFEDIEEKDV 197
Score = 74.7 bits (182), Expect(2) = 3e-12
Identities = 36/115 (31%), Positives = 71/115 (61%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F MP K+++SWN+++ GY N ++ K FE + ++K+ I++N+++GG+ + +D A
Sbjct: 158 FDGMPAKNLVSWNSMLLGYTQNGEMQFGLKFFEDI-EEKDVISWNLLLGGFIEVGDLDSA 216
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVS 530
++F + NVVSW +M+SG++ G EA + ++ E N+VT+ +++
Sbjct: 217 KEVFAKIPSPNVVSWVTMLSGFARYGMILEAEMIFDQIP----EKNEVTWNAMLA 267
Score = 22.7 bits (47), Expect(2) = 3e-12
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 53 GKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQFF 187
G+LE R + L+ N N +I Y K LD+A + F
Sbjct: 117 GELEKARDVFELLPD---KSNIACWNAMITGYAKAGRLDDARKMF 158
Score = 71.2 bits (173), Expect = 2e-10
Identities = 35/103 (33%), Positives = 61/103 (59%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F+++P +V+SW ++SG+ + EA IF+++ +K N +T+N M+ Y +N ++D A
Sbjct: 220 FAKIPSPNVVSWVTMLSGFARYGMILEAEMIFDQIPEK-NEVTWNAMLAAYVQNGKIDMA 278
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
LF M R+ V++T+M+ GY G KEA + +M V
Sbjct: 279 ASLFNRMSQRSAVAYTTMIDGYCRAGKLKEARDLLDQMPYRNV 321
Score = 71.2 bits (173), Expect = 2e-10
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 31/136 (22%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTK------- 344
F ++P K+ ++WNA+++ YV N +++ AA +F +M +++A+ Y MI GY +
Sbjct: 251 FDQIPEKNEVTWNAMLAAYVQNGKIDMAASLFNRMS-QRSAVAYTTMIDGYCRAGKLKEA 309
Query: 345 ------------------------NNQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFK 452
NN MDKA +F+ R+VV W +M+ GY+ G
Sbjct: 310 RDLLDQMPYRNVGARTAMISGYIQNNMMDKARWVFDRTATRDVVCWNTMIVGYAQCGRID 369
Query: 453 EALEFYRRMKREKVEV 500
EA + +M+ + + V
Sbjct: 370 EAFGLFEKMEPKSIVV 385
Score = 70.5 bits (171), Expect = 3e-10
Identities = 36/109 (33%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVIS-WNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKN 347
K + F +P K I+ WNA+++GY RL++A K+F+ M KN +++N M+ GYT+N
Sbjct: 121 KARDVFELLPDKSNIACWNAMITGYAKAGRLDDARKMFDGM-PAKNLVSWNSMLLGYTQN 179
Query: 348 NQMDKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKV 494
+M L+ FE + ++V+SW ++ G+ + G A E + ++ V
Sbjct: 180 GEMQFGLKFFEDIEEKDVISWNLLLGGFIEVGDLDSAKEVFAKIPSPNV 228
Score = 68.6 bits (166), Expect = 1e-09
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 38/160 (23%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIF----------------------- 281
K F M ++VISWN+++SGY N +A K F
Sbjct: 401 KALEIFENMGERNVISWNSLISGYTQNGFYVDALKYFITMTRDGKKPDHSTFASTLSSCS 460
Query: 282 ---------------EKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESMRVRNVVSWTS 416
K G KN N +I Y K ++ A ++FE + +V+SW S
Sbjct: 461 NLAAEHIGKQLHQAAIKTGYVKNLSVCNALIIMYAKCGKIFDAEKMFEDVDNADVISWNS 520
Query: 417 MVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVC 536
+++GY+ NGY +EA++ ++ M+ ++V +++TF ++S C
Sbjct: 521 LLAGYALNGYGQEAVKLFQEMEDKEVVPDELTFVSVLSAC 560
Score = 65.9 bits (159), Expect = 7e-09
Identities = 31/95 (32%), Positives = 61/95 (64%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F+ + + + +++N+++S Y N R+ A K+F+KM K N I++N MI GY N Q++KA
Sbjct: 33 FNRITHPNTVTYNSMISAYAKNGRIIHARKLFDKMLFK-NLISWNTMINGYLLNGQVEKA 91
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFY 470
+LF+ M R+ ++ M++ Y+ +G ++A + +
Sbjct: 92 CELFDKMPQRDHFTYALMITCYARSGELEKARDVF 126
Score = 65.5 bits (158), Expect = 9e-09
Identities = 31/106 (29%), Positives = 59/106 (55%)
Frame = +3
Query: 204 KDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFES 383
+ +I N ++ +++EA ++F ++ N +TYN MI Y KN ++ A +LF+
Sbjct: 8 RTIIQQNLKITQLGKRGQIDEAIRVFNRI-THPNTVTYNSMISAYAKNGRIIHARKLFDK 66
Query: 384 MRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTC 521
M +N++SW +M++GY NG ++A E + +M + + TC
Sbjct: 67 MLFKNLISWNTMINGYLLNGQVEKACELFDKMPQRDHFTYALMITC 112
>ref|XP_002301860.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550345843|gb|EEE81133.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 933
Score = 100 bits (248), Expect(2) = 1e-22
Identities = 47/124 (37%), Positives = 76/124 (61%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F EMP +DV +W +VSG V + A ++F+ M D+ N T+N +I GY + ++D A
Sbjct: 138 FDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDR-NLATWNTLIDGYARLREVDVA 196
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
LF M R+++SWT+M++ YS N F+EAL + M + + ++VT ++S CA+L
Sbjct: 197 ELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHL 256
Query: 546 AALE 557
AL+
Sbjct: 257 GALD 260
Score = 32.3 bits (72), Expect(2) = 1e-22
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 5 PNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQF 184
P T L A G + +L +HG V + G D + + L+D Y ++E+++
Sbjct: 78 PTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRV 137
Query: 185 F 187
F
Sbjct: 138 F 138
Score = 79.3 bits (194), Expect = 6e-13
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 38/162 (23%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMG------------------------ 293
F++MP +D+ISW +++ Y N R EA +F +M
Sbjct: 200 FNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGAL 259
Query: 294 DKKNAITYNIMIGG--------------YTKNNQMDKALQLFESMRVRNVVSWTSMVSGY 431
D I Y IM G Y K +D++L +F +R +N+ W S++ G
Sbjct: 260 DLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGL 319
Query: 432 SDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
+ +GY +EAL + +M+REK++ N VTF ++S C + +E
Sbjct: 320 AVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIE 361
Score = 49.7 bits (117), Expect(2) = 5e-12
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +2
Query: 5 PNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQF 184
P+E T+A + A +G L+ + IH ++Q+G + + IG+ LID Y KC LD ++
Sbjct: 241 PDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLM 300
Query: 185 FFR 193
FF+
Sbjct: 301 FFK 303
Score = 46.6 bits (109), Expect(2) = 5e-12
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKK---NAITYNIMIGGYTKNNQM 356
F ++ K++ WN+++ G V+ EEA +F+KM +K N +T+ ++ +
Sbjct: 301 FFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLI 360
Query: 357 DKALQLFESMR-----VRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTC 521
++ + F SM V + MV S G +EAL+ R M K+E N V +
Sbjct: 361 EEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTM---KLEPNAVIWGA 417
Query: 522 IVSVC 536
++S C
Sbjct: 418 LLSGC 422
>gb|EOY04983.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
[Theobroma cacao]
Length = 777
Score = 97.1 bits (240), Expect(2) = 1e-22
Identities = 44/123 (35%), Positives = 83/123 (67%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F+ M KD++SWN++++GYV + +EEA +FEKM K++ +++ MI G++ Q +K+
Sbjct: 343 FNMMRKKDLVSWNSLITGYVQENEVEEAYDLFEKM-PKRDVVSWTTMIMGFSSKGQTEKS 401
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANL 545
++LF M ++ V+WT+++SG+ N ++EA ++ M ++ V+ N +T + ++S ANL
Sbjct: 402 VELFRMMPEKDNVAWTAVISGFVSNEMYEEAFCWFTEMLQKSVKPNSLTLSSLLSASANL 461
Query: 546 AAL 554
A L
Sbjct: 462 AIL 464
Score = 35.4 bits (80), Expect(2) = 1e-22
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 8 NESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCK 154
N +TL+ + A G+ + +HGLV+Q+G + + +GN +I YC+
Sbjct: 284 NSTTLSIMVEACGNFDRYREGIQMHGLVLQFGFEFDVFLGNSIITMYCR 332
Score = 81.3 bits (199), Expect = 2e-13
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 38/167 (22%)
Frame = +3
Query: 171 KQCNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKK---NAITY-------- 317
K F MP KD ++W A++SG+V N+ EEA F +M K N++T
Sbjct: 400 KSVELFRMMPEKDNVAWTAVISGFVSNEMYEEAFCWFTEMLQKSVKPNSLTLSSLLSASA 459
Query: 318 ---------------------------NIMIGGYTKNNQMDKALQLFESMRVRNVVSWTS 416
N ++ Y K + A Q+F S++ N+VS+ S
Sbjct: 460 NLAILTQGQQIHGQAIKVHLEFDLSIQNSLVSMYLKCGNVSDACQVFMSIKEPNIVSFNS 519
Query: 417 MVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVCANLAALE 557
M++G++ NG+ +EAL+ +R+M+ E E N++TF ++S C ++ ++
Sbjct: 520 MITGFAQNGFGEEALKLFRKMQSEGQEPNQITFLAVLSACTHVGLVK 566
Score = 77.8 bits (190), Expect = 2e-12
Identities = 36/98 (36%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = +3
Query: 180 NFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQM- 356
+ F MP+K +SW A+++ Y N ++ +A ++F++M ++ + +YN MI Y KN M
Sbjct: 81 SIFYRMPFKSTVSWTAMLTAYADNGKISKAREVFDEMPERTTS-SYNAMITAYNKNGCMV 139
Query: 357 DKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFY 470
D+A +LF +M RN VS+ +M++G+ + G F +A+E Y
Sbjct: 140 DEAYKLFCNMSERNAVSYAAMITGFVNKGRFDKAMEIY 177
Score = 76.3 bits (186), Expect = 5e-12
Identities = 36/115 (31%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Frame = +3
Query: 201 YKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFE 380
+++ + N +++GY+ RL+EA + E M ++ + +++++M+ GY K+ ++ +A +LF+
Sbjct: 184 WREPVCSNVLINGYLKVGRLDEAVGVSEGMVER-DVVSWSLMVDGYCKSGRLAEARKLFD 242
Query: 381 SMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREK-VEVNKVTFTCIVSVCAN 542
M RNVV+WT+M++GY G + + M++E V VN T + +V C N
Sbjct: 243 KMVERNVVTWTTMINGYMKMGNLIDGFGLFSSMRKESGVLVNSTTLSIMVEACGN 297
Score = 69.3 bits (168), Expect = 6e-10
Identities = 37/108 (34%), Positives = 65/108 (60%)
Frame = +3
Query: 207 DVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQLFESM 386
DV N+I++ Y + A +F M KK+ +++N +I GY + N++++A LFE M
Sbjct: 319 DVFLGNSIITMYCRFGCIYAANLVFNMMR-KKDLVSWNSLITGYVQENEVEEAYDLFEKM 377
Query: 387 RVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVS 530
R+VVSWT+M+ G+S G ++++E +R M E + V +T ++S
Sbjct: 378 PKRDVVSWTTMIMGFSSKGQTEKSVELFRMMP----EKDNVAWTAVIS 421
Score = 57.4 bits (137), Expect = 2e-06
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Frame = +3
Query: 195 MPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKALQL 374
M +DV+SW+ +V GY + RL EA K+F+KM + +N +T+ MI GY K + L
Sbjct: 213 MVERDVVSWSLMVDGYCKSGRLAEARKLFDKMVE-RNVVTWTTMINGYMKMGNLIDGFGL 271
Query: 375 FESMR-----VRNVVSWTSMVSGYSDNGYFKEALEFY 470
F SMR + N + + MV + ++E ++ +
Sbjct: 272 FSSMRKESGVLVNSTTLSIMVEACGNFDRYREGIQMH 308
>ref|XP_002305377.2| hypothetical protein POPTR_0004s12430g [Populus trichocarpa]
gi|550340897|gb|EEE85888.2| hypothetical protein
POPTR_0004s12430g [Populus trichocarpa]
Length = 604
Score = 99.0 bits (245), Expect(2) = 1e-22
Identities = 47/126 (37%), Positives = 75/126 (59%)
Frame = +3
Query: 177 CNFFSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQM 356
C F EMP KD +SWN I+ GYV + +A +FE M ++ N ++++ M+ GY K M
Sbjct: 209 CKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPER-NVVSWSTMVSGYCKAGDM 267
Query: 357 DKALQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVSVC 536
+ A LF+ M V+N+VSWT +VSGY+ G K+A+ + +M+ ++ + T I++ C
Sbjct: 268 EMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTIISILASC 327
Query: 537 ANLAAL 554
A L
Sbjct: 328 AESGLL 333
Score = 33.5 bits (75), Expect(2) = 1e-22
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 77 IHGLVIQYGLDENATIGNVLIDAYCKC--KGLDEAMQFF 187
IH + +YG ++ + N LID+YCKC G+ AM+ F
Sbjct: 143 IHNHLEKYGFFQDLFVPNSLIDSYCKCGLLGVKSAMRLF 181
Score = 89.0 bits (219), Expect = 7e-16
Identities = 49/115 (42%), Positives = 73/115 (63%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKMGDKKNAITYNIMIGGYTKNNQMDKA 365
F M +DV+SWN+++ G + L EA K+F++M K+A+++N ++ GY K +M+KA
Sbjct: 181 FKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEM-PMKDAVSWNTILDGYVKAGEMNKA 239
Query: 366 LQLFESMRVRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTCIVS 530
LFESM RNVVSW++MVSGY G + A + RM + N V++T IVS
Sbjct: 240 FGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVK----NLVSWTIIVS 290
Score = 42.4 bits (98), Expect(2) = 9e-06
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Frame = +3
Query: 186 FSEMPYKDVISWNAIVSGYVVNDRLEEAAKIFEKM---GDKKNAITYNIMIGGYTKNNQM 356
F+ M KD++SWN ++ G ++ E+A ++F M G + + +T ++ +
Sbjct: 375 FNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFV 434
Query: 357 DKALQLFESMR-----VRNVVSWTSMVSGYSDNGYFKEALEFYRRMKREKVEVNKVTFTC 521
D+ ++ F +M V ++ + MV G KEA YR ++ VE N V +
Sbjct: 435 DEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEA---YRLVQSMPVEPNVVIWGT 491
Query: 522 IVSVC 536
++ C
Sbjct: 492 LLGAC 496
Score = 32.7 bits (73), Expect(2) = 9e-06
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +2
Query: 2 RPNESTLAGLGPALGDIGKLECCRGIHGLVIQYGLDENATIGNVLIDAYCKCKGLDEAMQ 181
+P++ T+ + + + G L + +H + + + + N L+D Y KC +D A+
Sbjct: 314 KPDDGTIISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALS 373
Query: 182 FF 187
F
Sbjct: 374 VF 375