BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00010313
         (799 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella t...    58   3e-06
gb|AHC94278.1| ribosomal protein S4, partial (mitochondrion) [Am...    57   1e-05
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ...    57   1e-05
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet...    57   1e-05

>gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella trichopoda]
          Length = 354

 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +3

Query: 531 KRKVQRIQLPTHYLEVNYRTMKAVVFDNPDFEFLPTQVKKALNNL 665
           KR+++RI+LPTHYLEVNYRT+KAVVF  PD   +P  ++    NL
Sbjct: 289 KRRIKRIELPTHYLEVNYRTLKAVVFYGPDIGHIPHDIRLKDPNL 333


>gb|AHC94278.1| ribosomal protein S4, partial (mitochondrion) [Amborella
           trichopoda]
          Length = 324

 Score = 56.6 bits (135), Expect = 1e-05
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 531 KRKVQRIQLPTHYLEVNYRTMKAVVFDNPDFEFLP 635
           KR+++RI+LPTHYLEVNYRT+KAVVF  PD   +P
Sbjct: 289 KRRIKRIELPTHYLEVNYRTLKAVVFYGPDIGHIP 323


>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
           gi|357197350|gb|AET62946.1| ribosomal protein S4
           (mitochondrion) [Lotus japonicus]
          Length = 358

 Score = 56.6 bits (135), Expect = 1e-05
 Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
 Frame = +3

Query: 531 KRKVQRIQLPTHYLEVNYRTMKAVVFDNPDFEFLPTQVK-KALNNL 665
           KR+++RI+LPTHYLEVNYRT+KAVVF  P+   +P  ++ K LN L
Sbjct: 302 KRRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLL 347


>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
           gi|372450274|ref|YP_005090457.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
           gi|357197313|gb|AET62910.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
           gi|357197320|gb|AET62917.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
          Length = 358

 Score = 56.6 bits (135), Expect = 1e-05
 Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
 Frame = +3

Query: 531 KRKVQRIQLPTHYLEVNYRTMKAVVFDNPDFEFLPTQVK-KALNNL 665
           KR+++RI+LPTHYLEVNYRT+KAVVF  P+   +P  ++ K LN L
Sbjct: 302 KRRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLL 347