BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00010189
         (360 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302373.1| hypothetical protein POPTR_0002s11290g [Popu...    67   3e-09
gb|EOY15605.1| RNA-binding KH domain-containing protein, putativ...    61   1e-07
gb|EOY15604.1| RNA-binding KH domain-containing protein, putativ...    61   1e-07
gb|EOY15603.1| RNA-binding KH domain-containing protein, putativ...    61   1e-07
gb|EOY15601.1| RNA-binding KH domain-containing protein, putativ...    61   1e-07
ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus ...    60   2e-07
ref|XP_006338440.1| PREDICTED: KH domain-containing protein At4g...    58   1e-06
ref|XP_006338439.1| PREDICTED: KH domain-containing protein At4g...    58   1e-06
ref|XP_006338437.1| PREDICTED: KH domain-containing protein At4g...    58   1e-06
ref|XP_006363406.1| PREDICTED: KH domain-containing protein At4g...    57   3e-06
ref|XP_004233368.1| PREDICTED: KH domain-containing protein At4g...    57   3e-06
ref|XP_004252619.1| PREDICTED: KH domain-containing protein At4g...    56   4e-06
ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g...    56   6e-06
ref|XP_002323932.2| hypothetical protein POPTR_0017s07000g [Popu...    55   7e-06
ref|XP_006597366.1| PREDICTED: KH domain-containing protein At4g...    55   1e-05
ref|XP_006362108.1| PREDICTED: KH domain-containing protein At4g...    55   1e-05
ref|XP_006845786.1| hypothetical protein AMTR_s00019p00253900 [A...    55   1e-05

>ref|XP_002302373.1| hypothetical protein POPTR_0002s11290g [Populus trichocarpa]
           gi|222844099|gb|EEE81646.1| hypothetical protein
           POPTR_0002s11290g [Populus trichocarpa]
          Length = 680

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
 Frame = -2

Query: 221 TKMSSSKRFHEAASHETNGKKK----ARTSASSVPLRVGADESVFRILCLSPRIGGVIGK 54
           T ++ SKR H++ S ETNGK K    A T++ + PL+      VFRILC +P+IG V G+
Sbjct: 3   TALTPSKRLHDSKSTETNGKGKRQNTAGTNSPNQPLKSSPAAVVFRILCPAPKIGTVTGE 62

Query: 53  EGSVVQKIREETDAKI 6
            G+V+ +IR+ET AK+
Sbjct: 63  GGAVISQIRQETGAKV 78


>gb|EOY15605.1| RNA-binding KH domain-containing protein, putative isoform 5
           [Theobroma cacao]
          Length = 572

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 47/73 (64%)
 Frame = -2

Query: 221 TKMSSSKRFHEAASHETNGKKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSV 42
           T ++ SKR H+    ETNGK+K + S  S  L  G    VFR+LC + + G VIGK G++
Sbjct: 3   TPLTPSKRPHDRNPSETNGKRKLQKSGQSKILPGGI---VFRVLCPASKTGSVIGKGGTI 59

Query: 41  VQKIREETDAKIR 3
           + +IR+ET AK++
Sbjct: 60  ISQIRQETGAKVK 72


>gb|EOY15604.1| RNA-binding KH domain-containing protein, putative isoform 4
           [Theobroma cacao]
          Length = 590

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 47/73 (64%)
 Frame = -2

Query: 221 TKMSSSKRFHEAASHETNGKKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSV 42
           T ++ SKR H+    ETNGK+K + S  S  L  G    VFR+LC + + G VIGK G++
Sbjct: 3   TPLTPSKRPHDRNPSETNGKRKLQKSGQSKILPGGI---VFRVLCPASKTGSVIGKGGTI 59

Query: 41  VQKIREETDAKIR 3
           + +IR+ET AK++
Sbjct: 60  ISQIRQETGAKVK 72


>gb|EOY15603.1| RNA-binding KH domain-containing protein, putative isoform 3
           [Theobroma cacao]
          Length = 662

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 47/73 (64%)
 Frame = -2

Query: 221 TKMSSSKRFHEAASHETNGKKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSV 42
           T ++ SKR H+    ETNGK+K + S  S  L  G    VFR+LC + + G VIGK G++
Sbjct: 3   TPLTPSKRPHDRNPSETNGKRKLQKSGQSKILPGGI---VFRVLCPASKTGSVIGKGGTI 59

Query: 41  VQKIREETDAKIR 3
           + +IR+ET AK++
Sbjct: 60  ISQIRQETGAKVK 72


>gb|EOY15601.1| RNA-binding KH domain-containing protein, putative isoform 1
           [Theobroma cacao] gi|508723705|gb|EOY15602.1|
           RNA-binding KH domain-containing protein, putative
           isoform 1 [Theobroma cacao]
          Length = 674

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 47/73 (64%)
 Frame = -2

Query: 221 TKMSSSKRFHEAASHETNGKKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSV 42
           T ++ SKR H+    ETNGK+K + S  S  L  G    VFR+LC + + G VIGK G++
Sbjct: 3   TPLTPSKRPHDRNPSETNGKRKLQKSGQSKILPGGI---VFRVLCPASKTGSVIGKGGTI 59

Query: 41  VQKIREETDAKIR 3
           + +IR+ET AK++
Sbjct: 60  ISQIRQETGAKVK 72


>ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus communis]
           gi|223550715|gb|EEF52201.1| Poly(rC)-binding protein,
           putative [Ricinus communis]
          Length = 679

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%)
 Frame = -2

Query: 221 TKMSSSKRFHEAASHETNGKKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSV 42
           T ++ +KR H+    ETNGK K + + +S P+R      VFRILC + + GG+IGK G++
Sbjct: 3   TALTPAKRPHDRNHTETNGKSKLQKTVNS-PVR----GVVFRILCPASKTGGIIGKGGAI 57

Query: 41  VQKIREETDAKIR 3
           + +IR+ET AK+R
Sbjct: 58  ISQIRQETGAKVR 70


>ref|XP_006338440.1| PREDICTED: KH domain-containing protein At4g18375-like isoform X4
           [Solanum tuberosum]
          Length = 488

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = -2

Query: 212 SSSKRFHEAASHETNGKKKARTSASSVPL-RVGADESVFRILCLSPRIGGVIGKEGSVVQ 36
           S  KR H  + +  NG+ K R + S   L  +G D++V+R LC   +IG +IG+ G +V+
Sbjct: 7   SYGKRSHSQSDYADNGRNKRRNTGSDKDLFSIGPDDTVYRYLCAGKKIGSIIGRGGEIVK 66

Query: 35  KIREETDAKIR 3
           ++R +T +KIR
Sbjct: 67  QLRVDTKSKIR 77


>ref|XP_006338439.1| PREDICTED: KH domain-containing protein At4g18375-like isoform X3
           [Solanum tuberosum]
          Length = 541

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = -2

Query: 212 SSSKRFHEAASHETNGKKKARTSASSVPL-RVGADESVFRILCLSPRIGGVIGKEGSVVQ 36
           S  KR H  + +  NG+ K R + S   L  +G D++V+R LC   +IG +IG+ G +V+
Sbjct: 7   SYGKRSHSQSDYADNGRNKRRNTGSDKDLFSIGPDDTVYRYLCAGKKIGSIIGRGGEIVK 66

Query: 35  KIREETDAKIR 3
           ++R +T +KIR
Sbjct: 67  QLRVDTKSKIR 77


>ref|XP_006338437.1| PREDICTED: KH domain-containing protein At4g18375-like isoform X1
           [Solanum tuberosum] gi|565342614|ref|XP_006338438.1|
           PREDICTED: KH domain-containing protein At4g18375-like
           isoform X2 [Solanum tuberosum]
          Length = 542

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = -2

Query: 212 SSSKRFHEAASHETNGKKKARTSASSVPL-RVGADESVFRILCLSPRIGGVIGKEGSVVQ 36
           S  KR H  + +  NG+ K R + S   L  +G D++V+R LC   +IG +IG+ G +V+
Sbjct: 7   SYGKRSHSQSDYADNGRNKRRNTGSDKDLFSIGPDDTVYRYLCAGKKIGSIIGRGGEIVK 66

Query: 35  KIREETDAKIR 3
           ++R +T +KIR
Sbjct: 67  QLRVDTKSKIR 77


>ref|XP_006363406.1| PREDICTED: KH domain-containing protein At4g18375-like [Solanum
           tuberosum]
          Length = 555

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -2

Query: 212 SSSKRFHEAASHETNGKKKARTSASSV-PLRVGADESVFRILCLSPRIGGVIGKEGSVVQ 36
           S  KR H  + +  NG  K R + +   P  +G D++V+R LC   +IG +IGK G +V+
Sbjct: 7   SYGKRSHSQSDYSENGGNKRRNTRNDKDPFSIGPDDTVYRYLCPVKKIGSIIGKGGEIVK 66

Query: 35  KIREETDAKIR 3
           ++R +T +KIR
Sbjct: 67  QLRVDTKSKIR 77


>ref|XP_004233368.1| PREDICTED: KH domain-containing protein At4g18375-like [Solanum
           lycopersicum]
          Length = 555

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = -2

Query: 212 SSSKRFHEAASH-ETNGKKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSVVQ 36
           S  KR H  + + E  G K+  T     P  +G D++V+R LC   +IG +IGK G +V+
Sbjct: 7   SYGKRSHSQSDYGENGGNKRRNTRNDKDPFSIGPDDTVYRYLCSVKKIGSIIGKGGEIVK 66

Query: 35  KIREETDAKIR 3
           ++R +T +KIR
Sbjct: 67  QLRVDTKSKIR 77


>ref|XP_004252619.1| PREDICTED: KH domain-containing protein At4g18375-like [Solanum
           lycopersicum]
          Length = 645

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
 Frame = -2

Query: 227 FRTKMSSSKRFHEAA-SHETNGKKKARTSASSVP-LRVGADESVFRILCLSPRIGGVIGK 54
           F T   ++KR H+   S  T      RT    +P L++   E+ FRILC + + GGVIGK
Sbjct: 17  FDTSTPTAKRRHQLLPSSATPPSNSFRTPPPPLPFLKLSPGEAFFRILCPADKTGGVIGK 76

Query: 53  EGSVVQKIREETDAKIR 3
            G++++++REET AKIR
Sbjct: 77  GGAIIRQLREETGAKIR 93


>ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g18375-like isoform X1
           [Glycine max] gi|571459642|ref|XP_006581471.1|
           PREDICTED: KH domain-containing protein At4g18375-like
           isoform X2 [Glycine max]
          Length = 676

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = -2

Query: 215 MSSSKRFHEAASHETNGK-KKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSVV 39
           M+SSKR +       NG+ K+ R+S     L V     VFR+LC + RIGGVIGK GS++
Sbjct: 1   MTSSKRPNAGP----NGRGKRRRSSGGFSSLGVSPGSVVFRLLCHASRIGGVIGKGGSII 56

Query: 38  QKIREETDAKIR 3
            +IR+ET  K+R
Sbjct: 57  SQIRQETGVKLR 68


>ref|XP_002323932.2| hypothetical protein POPTR_0017s07000g [Populus trichocarpa]
           gi|550319661|gb|EEF04065.2| hypothetical protein
           POPTR_0017s07000g [Populus trichocarpa]
          Length = 745

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 25/56 (44%), Positives = 40/56 (71%)
 Frame = -2

Query: 170 NGKKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSVVQKIREETDAKIR 3
           N + K + SAS+ PL V +    FR+LC + RIGGVIGK G++++ ++++T AK+R
Sbjct: 38  NKRSKPQPSASAAPLPVPSGHVSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVR 93


>ref|XP_006597366.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
           max]
          Length = 722

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 27/59 (45%), Positives = 36/59 (61%)
 Frame = -2

Query: 179 HETNGKKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSVVQKIREETDAKIR 3
           H     K++R S    PL V      FR+LC + RIGGVIGK GSV++ +++ T AKIR
Sbjct: 21  HPNGPSKRSRQSKPPPPLSVPPGHVAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIR 79


>ref|XP_006362108.1| PREDICTED: KH domain-containing protein At4g18375-like [Solanum
           tuberosum]
          Length = 645

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
 Frame = -2

Query: 227 FRTKMSSSKRFHEAA-SHETNGKKKARTSASSVP-LRVGADESVFRILCLSPRIGGVIGK 54
           F T   ++KR H+   S  T      RT     P L++   E+ FRILC + + GGVIGK
Sbjct: 17  FDTSTPTTKRRHQLLPSSATPPSNSFRTPPPPPPFLKLSPGEAFFRILCPADKTGGVIGK 76

Query: 53  EGSVVQKIREETDAKIR 3
            G++++++REET AKIR
Sbjct: 77  GGAIIRQLREETGAKIR 93


>ref|XP_006845786.1| hypothetical protein AMTR_s00019p00253900 [Amborella trichopoda]
           gi|548848358|gb|ERN07461.1| hypothetical protein
           AMTR_s00019p00253900 [Amborella trichopoda]
          Length = 693

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
 Frame = -2

Query: 176 ETNG---KKKARTSASSVPLRVGADESVFRILCLSPRIGGVIGKEGSVVQKIREETDAKI 6
           E NG   K++  +  S  PL++   E++FRILC + + GGVIGK G ++++ R+ET AKI
Sbjct: 18  ECNGATPKRRVSSFKSPPPLKITVGETLFRILCPANKTGGVIGKGGGIIKQFRDETGAKI 77

Query: 5   R 3
           R
Sbjct: 78  R 78