BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00010049
         (3382 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGV77083.1| PHYN [Picea abies]                                    1543   0.0  
sp|Q40762.1|PHY_PICAB RecName: Full=Phytochrome gi|1399958|gb|AA...  1390   0.0  
ref|XP_001773550.1| phytochrome 4 [Physcomitrella patens] gi|139...  1373   0.0  
dbj|BAB39687.1| phytochrome [Marchantia paleacea subsp. diptera]     1368   0.0  
gb|AAM94952.1| phytochrome [Physcomitrella patens]                   1367   0.0  
ref|XP_001782339.1| phytochrome 2 [Physcomitrella patens] gi|139...  1355   0.0  
gb|AAM94954.1| phytochrome [Physcomitrella patens]                   1355   0.0  
ref|XP_002991119.1| hypothetical protein SELMODRAFT_161430 [Sela...  1350   0.0  
ref|XP_002991641.1| hypothetical protein SELMODRAFT_161807 [Sela...  1348   0.0  
ref|XP_001761145.1| phytochrome 5a [Physcomitrella patens] gi|16...  1331   0.0  
sp|Q01549.1|PHY1_SELMA RecName: Full=Phytochrome 1 gi|22603|emb|...  1324   0.0  
ref|XP_001754366.1| phytochrome 5c [Physcomitrella patens] gi|16...  1318   0.0  
gb|ABW91071.1| phytochrome-4 [Ceratodon purpureus]                   1316   0.0  
ref|XP_001767224.1| phytochrome 5b3 [Physcomitrella patens] gi|1...  1313   0.0  
sp|Q39557.1|PHY2_CERPU RecName: Full=Phytochrome 2 gi|1314837|gb...  1306   0.0  
emb|CAC11136.1| phytochrome N [Pinus sylvestris]                     1305   0.0  
gb|AAB19058.1| phytochrome photoreceptor [Ceratodon purpureus]       1305   0.0  
dbj|BAA33775.1| phytochrome 2 [Adiantum capillus-veneris]            1303   0.0  
gb|AAM94956.1| phytochrome [Ceratodon purpureus]                     1303   0.0  
ref|XP_001778155.1| phytochrome 1 [Physcomitrella patens] gi|139...  1300   0.0  

>gb|AGV77083.1| PHYN [Picea abies]
          Length = 1164

 Score = 1543 bits (3996), Expect = 0.0
 Identities = 761/1029 (73%), Positives = 883/1029 (85%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA + L   +H+VP+V D+++L IG+D R+LFTP+S+ ALQKAA F E+NLLNPIL
Sbjct: 140  AYSENAPDMLQVSAHAVPSVEDQQILCIGSDARTLFTPSSTMALQKAAKFGELNLLNPIL 199

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VHSK+SGKPF AILHRID ALV+DFEP+ P D   ++ GALQSYKLA+KAISRLQS+PSG
Sbjct: 200  VHSKSSGKPFYAILHRIDVALVIDFEPISPSDVSTSSMGALQSYKLAAKAISRLQSIPSG 259

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            NI LLCDM+V+EV EL GYDRVMAYKFH D+HGEVISEIRRSDLEPYLGLHYPATD+PQA
Sbjct: 260  NIGLLCDMIVQEVRELLGYDRVMAYKFHHDEHGEVISEIRRSDLEPYLGLHYPATDIPQA 319

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLF++NRVRMICDC +PPV VIQDKRL ++LSFCGSTLRAPHGCHAQYMANMGS+ASL
Sbjct: 320  SRFLFLRNRVRMICDCCAPPVTVIQDKRLPRDLSFCGSTLRAPHGCHAQYMANMGSIASL 379

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAV+VN          GQ Q KGR+LWGLVVCHHTSPR+VPFPLRYACEF+MQVF IQL
Sbjct: 380  VMAVVVNEKELDGDSE-GQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVFGIQL 438

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            NKEVELA QMREK+ILRTQTLLCDMLLRD PLGI++QKP+IMDLV+CDGAALYYG+ FWL
Sbjct: 439  NKEVELAAQMREKKILRTQTLLCDMLLRDAPLGIVTQKPNIMDLVSCDGAALYYGENFWL 498

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LG+TPTE Q+ DI+AWL E H DSTGLSTDSL  AGYP A  L +A+CG+AAVRIN  DF
Sbjct: 499  LGVTPTEVQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAGALGDAVCGIAAVRINSKDF 558

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHD  ++DD RKMHPRSSF AFLEVVK RSLPWED EMDAIHS
Sbjct: 559  LFWFRSHTAKEIKWGGAKHDLEDKDDGRKMHPRSSFNAFLEVVKMRSLPWEDAEMDAIHS 618

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR SCK++D      + ++I++N QLN+LKL+EMDELNAVTNEMVRLIETAT PIL
Sbjct: 619  LQLILRGSCKETD-----GSGRNISMNRQLNDLKLKEMDELNAVTNEMVRLIETATAPIL 673

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLVNLVEETSVGTVKRILSLALEGQEESNIQ 1581
            AVD+ G+VNGWN+KAAELTG+S EEVLGEPL+NLVEETS   V+R+L LALEG EE N+Q
Sbjct: 674  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLINLVEETSAENVERMLHLALEGVEEQNVQ 733

Query: 1580 IELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYKA 1401
            IELK HG   + GPV L+VNAC+SRD+K+N+VGVCFVAQDVTGQK+VMDKFTRIQGDY+A
Sbjct: 734  IELKRHGSQGDKGPVVLLVNACSSRDLKENIVGVCFVAQDVTGQKIVMDKFTRIQGDYRA 793

Query: 1400 IVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLKG 1221
            IVQNPSPLIPPIFGTDE GWCSEWNSAMEKL+GW+RE II+KML GEVFGTR  CCRLKG
Sbjct: 794  IVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLFGEVFGTRTSCCRLKG 853

Query: 1220 QNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLHI 1041
             N++T+LRIVLNS+MAGQETEKFP         +VEALLSANK++DE+ RITGVFCFLH+
Sbjct: 854  LNALTQLRIVLNSSMAGQETEKFPFGFFDRHGKYVEALLSANKKLDEEERITGVFCFLHL 913

Query: 1040 ASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQLV 861
            AS ELQQAL V+ + EQ S           +EIKNPL GI F Q ++ER+ L+E+Q QLV
Sbjct: 914  ASPELQQALCVQHMLEQASMKRLKALTYLRMEIKNPLYGIMFTQTMMERTALREDQRQLV 973

Query: 860  KISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIFH 681
            + S LCQKQILKILDDMDLESIEDGYL+LDT EFTLG LLD VI+QGM++ EEKGLEI +
Sbjct: 974  ETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIDY 1033

Query: 680  DTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKRISIKLSSTRRNLGGGVYVLDLE 501
            D PRE+  T +YGDQ RLQQIL+NFL+NVIQFTP  K + IK+SST+R+LGGGVYV+ +E
Sbjct: 1034 DLPREITTTGVYGDQSRLQQILANFLVNVIQFTPAEKWVRIKVSSTKRHLGGGVYVIRVE 1093

Query: 500  FRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFVII 321
            FRITHPG GLPE+LV+QM +++  MSQ+G+GLFICRKLV+LMNGDVQYLRGGGTS F+++
Sbjct: 1094 FRITHPGPGLPEKLVQQMFNLDPDMSQEGFGLFICRKLVRLMNGDVQYLRGGGTSSFIVV 1153

Query: 320  VELATNQSD 294
            VELA+ Q+D
Sbjct: 1154 VELASGQTD 1162


>sp|Q40762.1|PHY_PICAB RecName: Full=Phytochrome gi|1399958|gb|AAB03339.1| phytochrome
            [Picea abies]
          Length = 1136

 Score = 1390 bits (3597), Expect = 0.0
 Identities = 691/1040 (66%), Positives = 833/1040 (80%), Gaps = 12/1040 (1%)
 Frame = -3

Query: 3377 YSENALETL--TDGSHSVPNVGDKE---------VLGIGTDVRSLFTPASSAALQKAAGF 3231
            YSENA E L    G+H+VP++G ++         +L IG D R+LF PAS+AALQKAA F
Sbjct: 101  YSENAPEMLDVVGGAHAVPSIGGQQQEGGGGGGGLLRIGMDARTLFKPASAAALQKAATF 160

Query: 3230 VEVNLLNPILVHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKA 3051
             +++L+NPI V    SGKPF AIL+RIDA LV+DFEPV P D P++AAGALQSYKLA+KA
Sbjct: 161  ADMHLVNPIFVRCNRSGKPFYAILNRIDAGLVIDFEPVMPSDVPVSAAGALQSYKLAAKA 220

Query: 3050 ISRLQSMPSGNISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGL 2871
            ISRLQS+P G+I LLCD VV+EV ELTGYDRVMAY+FHED+HGEV++E+RR DLEPYLGL
Sbjct: 221  ISRLQSLPGGDIRLLCDTVVQEVRELTGYDRVMAYRFHEDEHGEVVAEMRRPDLEPYLGL 280

Query: 2870 HYPATDVPQASRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQY 2691
            HYPATD+PQASRFLFMKNRVRMICDC +PPV VIQDKRL++ LS CGSTLRAPHGCHAQY
Sbjct: 281  HYPATDIPQASRFLFMKNRVRMICDCCAPPVNVIQDKRLRQPLSLCGSTLRAPHGCHAQY 340

Query: 2690 MANMGSVASLVMAVIVNXXXXXXXXXEGQSQPKGR-KLWGLVVCHHTSPRFVPFPLRYAC 2514
            MANMGS+ASLVM+V  N          GQ QP+ R KLWGLVVCHHTSPR +PFPLRYAC
Sbjct: 341  MANMGSIASLVMSVTTNENGDDSEGG-GQQQPQNRRKLWGLVVCHHTSPRVIPFPLRYAC 399

Query: 2513 EFMMQVFSIQLNKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDG 2334
            EF+MQVF IQLNKEVELA Q+REK ILR Q +LCDMLLRD P+GI+SQ P+IMDLV CDG
Sbjct: 400  EFLMQVFGIQLNKEVELAAQLREKHILRVQPVLCDMLLRDAPVGIVSQTPNIMDLVKCDG 459

Query: 2333 AALYYGKKFWLLGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICG 2154
            AAL YGK+ WLLG TPTE Q+LDI  WL E H DSTGLSTDSLAEAGYP A+ L +A+CG
Sbjct: 460  AALLYGKRLWLLGTTPTEAQILDIADWLLEHHRDSTGLSTDSLAEAGYPGAASLGDAVCG 519

Query: 2153 MAAVRINLGDFLFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLP 1974
            +AA RI   DFLFWFR+HTAKEI WGGAKHDPN++DD R+MHPRSSF+AFLEVVK RSLP
Sbjct: 520  IAAARITSKDFLFWFRSHTAKEIIWGGAKHDPNDKDDGRRMHPRSSFKAFLEVVKRRSLP 579

Query: 1973 WEDVEMDAIHSLQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMV 1794
            WEDVEMDAIHSLQLILR S    D  D K       I+++LN+L+L+ +DEL+AVTNEMV
Sbjct: 580  WEDVEMDAIHSLQLILRDSFHDIDDSDSKT-----MIHARLNDLRLQGIDELSAVTNEMV 634

Query: 1793 RLIETATVPILAVDSNGLVNGWNKKAAELTGMSAEEVLGEPLVNLVEETSVGTVKRILSL 1614
            RLIETATVPILA+DSNGLVNGWN KAAELTG+ A+EV+G PL++LV+  SV  VK++L L
Sbjct: 635  RLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQHDSVEIVKKMLYL 694

Query: 1613 ALEGQEESNIQIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMD 1434
            AL+G+EE N++I+LKT G  EE GPV LIVNAC+SRD+++NVVGVCFVAQDVT Q++ MD
Sbjct: 695  ALQGEEEQNVEIKLKTFGIQEEKGPVVLIVNACSSRDLEENVVGVCFVAQDVTWQRIAMD 754

Query: 1433 KFTRIQGDYKAIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVF 1254
            KFT +QGDY+AIVQNP+PLIPPIFG DE+G+CSEWN AMEKLTGW+RE +I KML+GEVF
Sbjct: 755  KFTHLQGDYRAIVQNPNPLIPPIFGADEYGYCSEWNPAMEKLTGWKREEVIGKMLVGEVF 814

Query: 1253 GTRAVCCRLKGQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDG 1074
            G   + C+LKGQ+ +TKLRIVLN+AMAG+ETEKFP           EALLSANKR D +G
Sbjct: 815  GIHRMSCQLKGQDGLTKLRIVLNNAMAGKETEKFPFSFFDRHGKNTEALLSANKRTDAEG 874

Query: 1073 RITGVFCFLHIASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLER 894
             ITGVFCFLH+ S ELQQAL+V+R++EQ +            EI+NPL GI F ++L+E 
Sbjct: 875  IITGVFCFLHVTSTELQQALQVQRMAEQAAMDRLKELAYIRQEIRNPLYGIIFTRKLMES 934

Query: 893  SGLKEEQTQLVKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMM 714
            + L EEQ Q+V+ S LCQ+Q++K+LDD DLESIEDGYLELDT EFTLG +LD V++QGM+
Sbjct: 935  TDLSEEQKQIVQTSALCQRQLVKVLDDADLESIEDGYLELDTIEFTLGTVLDAVVSQGMI 994

Query: 713  ECEEKGLEIFHDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKRISIKLSSTRRN 534
               EKGL++  D+P E+   CLYGDQ+RLQQILSNFL+N ++F+     +  K+  T+R+
Sbjct: 995  LSREKGLQLIRDSPEEIKTMCLYGDQLRLQQILSNFLINALRFSTSEGWVGNKVVPTKRH 1054

Query: 533  LGGGVYVLDLEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYL 354
            LG GV V+ +EFRITH GQG+PEEL+++M   N  M Q+G GL++C++LVK+MNGDVQYL
Sbjct: 1055 LGSGVNVMHMEFRITHSGQGIPEELIKEMFVHNQDMFQEGLGLYMCQQLVKIMNGDVQYL 1114

Query: 353  RGGGTSCFVIIVELATNQSD 294
            R  G S F+I VE    Q+D
Sbjct: 1115 REAGRSSFIINVEFPLAQTD 1134


>ref|XP_001773550.1| phytochrome 4 [Physcomitrella patens] gi|139001628|dbj|BAF51710.1|
            phytochrome4 [Physcomitrella patens]
            gi|162675089|gb|EDQ61588.1| phytochrome 4 [Physcomitrella
            patens]
          Length = 1126

 Score = 1373 bits (3554), Expect = 0.0
 Identities = 677/1031 (65%), Positives = 824/1031 (79%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP+VG +EVLGIGTD R+LFTP+S+AAL+K AG V+V +LNPI 
Sbjct: 97   AYSENAPEMLDLMPQAVPSVGQQEVLGIGTDARTLFTPSSAAALEKCAGAVDVTMLNPIS 156

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VH ++SGKPF AILHRID  LV+DFEPVRP D  +++AGALQS+KLA+KAISRLQ++P G
Sbjct: 157  VHCRSSGKPFYAILHRIDVGLVIDFEPVRPNDAVVSSAGALQSHKLAAKAISRLQALPGG 216

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV +L+GYDRVMAYKFHED+HGEV++EIRRSDLEPYLGLHYPATD+PQA
Sbjct: 217  DIGLLCDTVVEEVRQLSGYDRVMAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQA 276

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVRMI DCY+PPV+V+QDK L++ +S  GSTLRAPHGCHAQYM NM S+ASL
Sbjct: 277  SRFLFMKNRVRMIGDCYAPPVKVVQDKDLRQPISLAGSTLRAPHGCHAQYMGNMNSIASL 336

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAVIVN          GQ   +GRKLWGLVVCHHTSPR V FPLR ACEF+MQVF +QL
Sbjct: 337  VMAVIVNDPDEDPNSRGGQQ--RGRKLWGLVVCHHTSPRTVSFPLRSACEFLMQVFGLQL 394

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+FWL
Sbjct: 395  NMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKRFWL 454

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LGITP E Q+ +I  WL E H DSTGLSTDSLA+AGYP A+QL +A+CGMAA +I   DF
Sbjct: 455  LGITPNEVQIKEIADWLLEHHQDSTGLSTDSLADAGYPGAAQLGDAVCGMAAAKITPRDF 514

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHDP+E+DD RKMHPRSSF+AFLEVVK RSLPWED+EMDAIHS
Sbjct: 515  LFWFRSHTAKEIKWGGAKHDPDEKDDGRKMHPRSSFKAFLEVVKRRSLPWEDIEMDAIHS 574

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL+ MDEL+ V NEMVRLIETAT PIL
Sbjct: 575  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVRLIETATAPIL 629

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS+G +NGWN K AELTG+   E +G  LV +L+ E S+  V+R+L LAL+G+EE NI
Sbjct: 630  AVDSSGFINGWNAKVAELTGLPVGEAMGRSLVKDLILEESIDVVQRLLYLALQGEEEQNI 689

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+LKT G  +E G V LIVNAC+SRDV+DNVVGVCFV QDVTGQK V+DKFTRIQGDYK
Sbjct: 690  EIQLKTFGPQKEKGAVILIVNACSSRDVQDNVVGVCFVGQDVTGQKQVLDKFTRIQGDYK 749

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            AIVQNP+PLIPPIFGTDE+G+CSEWN +MEKLTGW+RE ++ K+L+GE+FG + +CCRLK
Sbjct: 750  AIVQNPNPLIPPIFGTDEYGYCSEWNPSMEKLTGWKREEVLGKLLVGEIFGMQLMCCRLK 809

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
            GQ++MTK  I LNSAM GQ+T++FP         +V+ALL+ NKR D +G ITGVFCFLH
Sbjct: 810  GQDAMTKFMIALNSAMDGQDTDRFPFSFFDRQGKYVDALLTVNKRTDAEGSITGVFCFLH 869

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
              S EL QAL V+R +E+ +            EIKNPL GI F + L+E + L E+Q Q 
Sbjct: 870  TTSVELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMEDTDLSEDQRQF 929

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            V+ S +C++Q+ K+LDDMDLESIEDGYLELDT EF +G ++D V++QGM+   EKGL++ 
Sbjct: 930  VETSAVCERQLRKVLDDMDLESIEDGYLELDTNEFVMGTVMDAVVSQGMITSREKGLQLI 989

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+   CL+GDQ+RLQQ+L++FLLN ++FTP  +  + IK+  T++ LGGG++V+ 
Sbjct: 990  RETPREIKNMCLFGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKVVPTKKRLGGGIHVMH 1049

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR+TH G GLPEELV +M      M+Q+G GL +CRKLVKLMNG+VQY+R  G S F+
Sbjct: 1050 LEFRVTHSGMGLPEELVHEMFDRGRGMTQEGLGLSMCRKLVKLMNGNVQYIRETGKSYFL 1109

Query: 326  IIVELATNQSD 294
            + VEL   Q D
Sbjct: 1110 VEVELPLAQRD 1120


>dbj|BAB39687.1| phytochrome [Marchantia paleacea subsp. diptera]
          Length = 1126

 Score = 1368 bits (3542), Expect = 0.0
 Identities = 686/1031 (66%), Positives = 820/1031 (79%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP VG ++VLGIGTD R+LF  AS+ AL+KAAG ++V++ NPI 
Sbjct: 97   AYSENAPEMLDLMPQAVPCVGQQDVLGIGTDARTLFNSASAVALEKAAGALDVSMFNPIS 156

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            V  K+SGKPF AI+HRIDA LV+D EPVRP D  ++AAGALQS+KLA+KAISRLQS+P G
Sbjct: 157  VQCKSSGKPFYAIVHRIDAGLVIDIEPVRPSDPSVSAAGALQSHKLAAKAISRLQSLPGG 216

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAYKFHED+HGEV++EIRRSDLEPYLGLHYPATD+PQA
Sbjct: 217  DIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQA 276

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVRMICDC + PV+VIQDK L++ LS  GSTLRAPHGCHAQYM NMGS+ASL
Sbjct: 277  SRFLFMKNRVRMICDCCAQPVQVIQDKELRQPLSLAGSTLRAPHGCHAQYMGNMGSIASL 336

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAVI+N               KGRKLWGLVVCHHT+PR VPFPLR ACEF+MQVF +QL
Sbjct: 337  VMAVIINVNDEEYSSRGYHH--KGRKLWGLVVCHHTTPRSVPFPLRSACEFLMQVFGLQL 394

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK+ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK++W+
Sbjct: 395  NMEVELAAQLREKRILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKRYWV 454

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LG TPTE Q+ DI  WL E H DSTGLSTDSLA+AGYP A+ L +A+CGMAA RI   DF
Sbjct: 455  LGTTPTELQIKDIADWLLEYHKDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDF 514

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHDP+++DD RKMHPRSSF+AFLEVVK RSLPWEDVEMDAIHS
Sbjct: 515  LFWFRSHTAKEIKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHS 574

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL+ MDEL+ V NEMVRLIETAT PIL
Sbjct: 575  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVRLIETATAPIL 629

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS+G +NGWN K AELTG+   E +G  LV +L  E SV TV+R+L LAL+G+EE N+
Sbjct: 630  AVDSSGFINGWNAKVAELTGLPVSEAMGRSLVKDLALEESVETVERLLYLALQGEEEQNV 689

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+L+T+G  ++ G V LIVNAC+SRDV +NVVGVCFV QDVTGQKVVMDKFTRIQGDYK
Sbjct: 690  EIKLQTYGAQKDKGAVILIVNACSSRDVTENVVGVCFVGQDVTGQKVVMDKFTRIQGDYK 749

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            AIVQNP+PLIPPIFG+DEFG+CSEWN AMEKL GW+RE +I KML+GE+FGT+ +CCRLK
Sbjct: 750  AIVQNPNPLIPPIFGSDEFGYCSEWNPAMEKLAGWKREEVIGKMLVGEIFGTQMMCCRLK 809

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
            GQ++MTK  IVLNSAM GQ++EKFP         FVEALL+ANKR D +G  TGVFCFL 
Sbjct: 810  GQDAMTKFMIVLNSAMDGQDSEKFPFAFFDRQGKFVEALLTANKRTDSEGAFTGVFCFLQ 869

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
            IAS EL QAL V+R +E+ +            EIKNPL GI F + L+E + L EEQ Q 
Sbjct: 870  IASMELLQALTVQRATEKVAFSKLKELAYIRQEIKNPLYGIMFTRNLVEDTNLTEEQKQF 929

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            ++ S LC++Q+ +ILDDMDLESIEDGYLELDTAEF +G ++D VI+QGM+   EKGL++ 
Sbjct: 930  IETSALCERQLRRILDDMDLESIEDGYLELDTAEFIMGTVMDAVISQGMITSREKGLQLI 989

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             DTPR+    CL+GDQ+RLQQ+L++FLLN I+FTP  +  + IK  S+R   GGGV+V+ 
Sbjct: 990  WDTPRDTKNLCLFGDQVRLQQVLADFLLNAIRFTPSSEGWVGIKGVSSRHRQGGGVHVVH 1049

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
             EFR+THPG GLPEELV++M      M+Q+G GL +CRKL+KLM+GDVQY+R  G   F+
Sbjct: 1050 FEFRVTHPGAGLPEELVQEMFDRGRGMTQEGLGLNMCRKLLKLMSGDVQYIREAGKCYFL 1109

Query: 326  IIVELATNQSD 294
            + VEL   Q D
Sbjct: 1110 VNVELPIAQRD 1120


>gb|AAM94952.1| phytochrome [Physcomitrella patens]
          Length = 1126

 Score = 1367 bits (3539), Expect = 0.0
 Identities = 675/1031 (65%), Positives = 821/1031 (79%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP+VG +EVLGIGTD R+LFTP+S+AAL+K AG V+V +LNPI 
Sbjct: 97   AYSENAPEMLDLMPQAVPSVGQQEVLGIGTDARTLFTPSSAAALEKCAGAVDVTMLNPIS 156

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VH ++SGKPF AILHRID  LV+DFEPVRP D  +++AGALQS+KLA+KAISRLQ++P G
Sbjct: 157  VHCRSSGKPFYAILHRIDVGLVIDFEPVRPNDAVVSSAGALQSHKLAAKAISRLQALPGG 216

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV +L+GYDRVMAYKFHED+HGEV++EIRRSDLEPYLGLHYPATD+PQA
Sbjct: 217  DIGLLCDTVVEEVRQLSGYDRVMAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQA 276

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVRMI DCY+PPV+V+QDK L++ +S  GSTLRAPHGCHAQYM NM S+ASL
Sbjct: 277  SRFLFMKNRVRMIGDCYAPPVKVVQDKDLRQPISLAGSTLRAPHGCHAQYMGNMNSIASL 336

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAVIVN          GQ   +GRKLWGLVVCHHTSPR V FPLR ACEF+M VF +QL
Sbjct: 337  VMAVIVNDPDEDPNSRGGQQ--RGRKLWGLVVCHHTSPRTVSFPLRSACEFLMLVFGLQL 394

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+FWL
Sbjct: 395  NMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKRFWL 454

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LGITP E Q+ +I  W  E H DSTGLSTDSLA+AGYP A+QL +A+CGMAA +I   DF
Sbjct: 455  LGITPNEVQIKEIADWFLEHHQDSTGLSTDSLADAGYPGAAQLGDAVCGMAAAKITPRDF 514

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHDP+E+DD RKMHPRSSF+AFLEVVK RSLPWED+EMDAIHS
Sbjct: 515  LFWFRSHTAKEIKWGGAKHDPDEKDDGRKMHPRSSFKAFLEVVKRRSLPWEDIEMDAIHS 574

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLI R S +  D  D K       I+++LN+LKL+ MDEL+ V NEMVRLIETAT PIL
Sbjct: 575  LQLISRGSFQDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVRLIETATAPIL 629

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS+G +NGWN K AELTG+   E +G  LV +L+ E S+  V+R+L LAL+G+EE NI
Sbjct: 630  AVDSSGFINGWNAKVAELTGLPVGEAMGRSLVKDLILEESIDVVQRLLYLALQGEEEQNI 689

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+LKT G  +E G V LIVNAC+SRDV+DNVVGVCFV QDVTGQK V+DKFTRIQGDYK
Sbjct: 690  EIQLKTFGPQKEKGAVILIVNACSSRDVQDNVVGVCFVGQDVTGQKQVLDKFTRIQGDYK 749

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            AIVQNP+PLIPPIFGTDE+G+CSEWN +MEKLTGW+RE ++ K+L+GE+FG + +CCRLK
Sbjct: 750  AIVQNPNPLIPPIFGTDEYGYCSEWNPSMEKLTGWKREEVLGKLLVGEIFGMQLMCCRLK 809

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
            GQ++MTK  I LNSAM GQ+T++FP         +V+ALL+ NKR D +G ITGVFCFLH
Sbjct: 810  GQDAMTKFMIALNSAMDGQDTDRFPFSFFDRQGKYVDALLTVNKRTDAEGSITGVFCFLH 869

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
              S EL QAL V+R +E+ +            EIKNPL GI F + L+E + L E+Q Q 
Sbjct: 870  TTSVELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMEDTDLSEDQRQF 929

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            V+ S +C++Q+ K+LDDMDLESIEDGYLELDT EF +G ++D V++QGM+   EKGL++ 
Sbjct: 930  VETSAVCERQLRKVLDDMDLESIEDGYLELDTNEFVMGTVMDAVVSQGMITSREKGLQLI 989

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTP-EGKRISIKLSSTRRNLGGGVYVLD 507
             +TPRE+   CL+GDQ+RLQQ+L++FLLN ++FTP  G  + IK+  T++ LGGG++V+ 
Sbjct: 990  RETPREIKNMCLFGDQVRLQQVLADFLLNAVKFTPSSGGWVGIKVVPTKKRLGGGIHVMH 1049

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR+TH G GLPEELV +M      M+Q+G GL +CRKLVKLMNG+VQY+R  G S F+
Sbjct: 1050 LEFRVTHSGMGLPEELVHEMFDRGRGMTQEGLGLSMCRKLVKLMNGNVQYIRETGKSYFL 1109

Query: 326  IIVELATNQSD 294
            + VEL   Q D
Sbjct: 1110 VEVELPLAQRD 1120


>ref|XP_001782339.1| phytochrome 2 [Physcomitrella patens] gi|139001623|dbj|BAF51708.1|
            phytochrome2 [Physcomitrella patens]
            gi|162666198|gb|EDQ52859.1| phytochrome 2 [Physcomitrella
            patens]
          Length = 1130

 Score = 1355 bits (3507), Expect = 0.0
 Identities = 671/1031 (65%), Positives = 815/1031 (79%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            A+SENA E L     +VP+VG +EVLGIGTD R+LFTP+S+AAL+K AG V+V +LNPI 
Sbjct: 97   AFSENAPEMLDLMPQAVPSVGQQEVLGIGTDARTLFTPSSAAALEKCAGAVDVTMLNPIS 156

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VH ++SGKPF AILHRID  LV+DFEPVR  D  +++AG LQS+KLA+KAISRLQ++P G
Sbjct: 157  VHCRSSGKPFYAILHRIDVGLVIDFEPVRSNDAIVSSAGVLQSHKLAAKAISRLQALPGG 216

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD+VV+EV EL+GYDRVMAYKFHED+HGEV++EIRRSDLEPYLGLHYPATD+PQA
Sbjct: 217  DIGLLCDIVVQEVRELSGYDRVMAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQA 276

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKN+VRMI DC++ PV+VIQDK L++ +S  GSTLRAPHGCHAQYM NM S+ASL
Sbjct: 277  SRFLFMKNKVRMIGDCFASPVKVIQDKDLRQPISLAGSTLRAPHGCHAQYMGNMNSIASL 336

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAVIVN          GQ   +GRKLWGLVVCHHTSPR V FPLR ACEF+MQVF +QL
Sbjct: 337  VMAVIVNDPDEDPNARGGQQ--RGRKLWGLVVCHHTSPRTVSFPLRSACEFLMQVFGLQL 394

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+FWL
Sbjct: 395  NMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKRFWL 454

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LGITP + Q+ +I  WL E H DSTGLSTDSLA+AGYP A+QL +A+CGMAA +I   DF
Sbjct: 455  LGITPNDAQIKEIADWLLEHHQDSTGLSTDSLADAGYPGAAQLGDAVCGMAAAKITSKDF 514

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHDP+E+DD RKMHPRSSF+AFL VVK RSLPWED+EMDAIHS
Sbjct: 515  LFWFRSHTAKEIKWGGAKHDPDEKDDGRKMHPRSSFKAFLVVVKRRSLPWEDIEMDAIHS 574

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL+ MDEL+ V NEMVRLIETAT PIL
Sbjct: 575  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVRLIETATAPIL 629

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS G +NGWN K AELTG+  EE +G  LV +L+   S+  V+R+L LAL+G EE NI
Sbjct: 630  AVDSGGFINGWNAKVAELTGLPVEEAMGRSLVKDLILNESIDVVQRLLHLALQGDEEQNI 689

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+LKT G  +E G V LIVNAC+SRDV+DNVVGVCFV QDVTGQK V+DKFTRIQGDYK
Sbjct: 690  EIQLKTFGPQKEKGAVILIVNACSSRDVQDNVVGVCFVGQDVTGQKQVLDKFTRIQGDYK 749

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            AIVQNP+PLIPPIFGTDE+G+CSEWN +MEKLTGW+RE +I K+L+GE+FG + +CCRLK
Sbjct: 750  AIVQNPNPLIPPIFGTDEYGYCSEWNPSMEKLTGWKREEVIGKLLVGEIFGIQLMCCRLK 809

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
             Q++MTK  IVLN AM GQ+T++FP         +V+ LL+ NKR D +G ITGVFCFLH
Sbjct: 810  SQDAMTKFMIVLNGAMDGQDTDRFPFSFFDRQGKYVDPLLTVNKRTDAEGSITGVFCFLH 869

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
              S EL QAL V+R +E+ +            EIKNPL GI F + L+E + L  +Q Q 
Sbjct: 870  TTSVELLQALTVQRSTEKVAFAKLKELAYIRQEIKNPLYGIVFTRNLMEDTDLSVDQRQF 929

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            V+ S +C++Q+ KILDD+DLESIEDGYLELDT EF +G ++D V++QGM+   EKGL++ 
Sbjct: 930  VETSAVCERQLRKILDDLDLESIEDGYLELDTTEFEMGTVMDAVVSQGMITSREKGLQLI 989

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TP E+   CLYGDQ+RLQQ+L++FLLN ++FTP  +  + IK+  T++ LG GV+V+ 
Sbjct: 990  RETPSEIKNMCLYGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKVVPTKKRLGRGVHVMH 1049

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR+THPG GLPEELV +M      M+Q+G GL +CRKLVKLMNG VQY+R  G SCF+
Sbjct: 1050 LEFRVTHPGLGLPEELVHEMFGRGRGMTQEGLGLSMCRKLVKLMNGTVQYIRETGKSCFL 1109

Query: 326  IIVELATNQSD 294
            + VEL   Q D
Sbjct: 1110 VEVELPLAQRD 1120


>gb|AAM94954.1| phytochrome [Physcomitrella patens]
          Length = 1130

 Score = 1355 bits (3507), Expect = 0.0
 Identities = 670/1031 (64%), Positives = 817/1031 (79%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            A+SENA E L     +VP+VG +EVLGIGTD R+LFTP+S+AAL+K AG V+V +LNPI 
Sbjct: 97   AFSENAPEMLDLMPQAVPSVGQQEVLGIGTDARTLFTPSSAAALEKCAGTVDVTMLNPIS 156

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VH ++SGKPF AILHRID  LV+DFEPVR  D  +++AG LQS+KLA+KAISRLQ++P G
Sbjct: 157  VHCRSSGKPFYAILHRIDVGLVIDFEPVRSNDAIVSSAGVLQSHKLAAKAISRLQALPGG 216

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD+VV+EV EL+GYDRVMAYKFHED+HGEV++EIRRSDLEPYLGLHYPATD+PQA
Sbjct: 217  DIGLLCDIVVQEVRELSGYDRVMAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQA 276

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKN+VRMI DC++ PV+VIQDK L++ +S  GSTLRAPHGCHAQYM NM S+ASL
Sbjct: 277  SRFLFMKNKVRMIGDCFASPVKVIQDKDLRQPISLAGSTLRAPHGCHAQYMGNMNSIASL 336

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAVIVN          GQ   +GRKLWGLVVCHHTSPR V FPLR ACEF+MQVF +QL
Sbjct: 337  VMAVIVNDPDEDPNARGGQQ--RGRKLWGLVVCHHTSPRTVSFPLRSACEFLMQVFGLQL 394

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAAL+YGK+FWL
Sbjct: 395  NMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALHYGKRFWL 454

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LGITP + Q+ +I  WL E H DSTGLSTDSLA+AGYP A+QL +A+CGMAA +I   DF
Sbjct: 455  LGITPNDAQIKEIADWLLEHHQDSTGLSTDSLADAGYPGAAQLGDAVCGMAAAKITSKDF 514

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHDP+E+DD RKMHPRSSF+AFL VVK RSLPWED+EMDAIHS
Sbjct: 515  LFWFRSHTAKEIKWGGAKHDPDEKDDGRKMHPRSSFKAFLVVVKRRSLPWEDIEMDAIHS 574

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL++MDEL+ V NEMVRLIETAT PIL
Sbjct: 575  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLQDMDELSTVANEMVRLIETATAPIL 629

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS G +NGWN K AELTG+  EE +G  LV +L+   S+  V+R+L LAL+G EE NI
Sbjct: 630  AVDSGGFINGWNAKVAELTGLPVEEAMGRSLVKDLILNESIDVVQRLLHLALQGDEEQNI 689

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+LKT G  +E G V LIVNAC+SRDV+DNVVGVCFV QDVTGQK V+DKFTRIQGDYK
Sbjct: 690  EIQLKTFGPQKEKGAVILIVNACSSRDVQDNVVGVCFVGQDVTGQKQVLDKFTRIQGDYK 749

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            AIVQNP+PLIPPIFGTDE+G+CSEWN +MEKLTGW+RE +I K+L+GE+FG + +CCRLK
Sbjct: 750  AIVQNPNPLIPPIFGTDEYGYCSEWNPSMEKLTGWKREEVIGKLLVGEIFGIQLMCCRLK 809

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
             Q++MTK  IVLN AM GQ+T++FP         +V+ LL+ NKR D +G ITGVFCFLH
Sbjct: 810  SQDAMTKFMIVLNGAMDGQDTDRFPFSFFDRQGKYVDPLLTVNKRTDAEGSITGVFCFLH 869

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
              S EL QAL V+R +E+ +            EIKNPL GI F + L+E + L  +Q QL
Sbjct: 870  TTSVELLQALTVQRSTEKVAFAKLKELAYIRQEIKNPLYGIVFTRNLMEDTDLSVDQRQL 929

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            V+ S +C++Q+ KILDD+DLESIEDGYLELDT EF +G ++D V++QGM+   EKGL++ 
Sbjct: 930  VETSAVCERQLRKILDDLDLESIEDGYLELDTTEFEMGTVMDAVVSQGMITSREKGLQLI 989

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TP E+   CLYGDQ+RLQQ+L++FLLN ++FTP  +  + IK+  T++ LG GV+V+ 
Sbjct: 990  RETPSEIKNMCLYGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKVVPTKKRLGRGVHVMH 1049

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            +EFR+THPG GLPEELV +M      M+Q+G GL +CRKLVKLMNG VQY+R  G SCF+
Sbjct: 1050 VEFRVTHPGLGLPEELVHEMFGRGRGMTQEGLGLSMCRKLVKLMNGTVQYIRETGKSCFL 1109

Query: 326  IIVELATNQSD 294
            + VEL   Q D
Sbjct: 1110 VEVELPLAQRD 1120


>ref|XP_002991119.1| hypothetical protein SELMODRAFT_161430 [Selaginella moellendorffii]
            gi|300141213|gb|EFJ07927.1| hypothetical protein
            SELMODRAFT_161430 [Selaginella moellendorffii]
          Length = 1143

 Score = 1350 bits (3494), Expect = 0.0
 Identities = 677/1041 (65%), Positives = 821/1041 (78%), Gaps = 12/1041 (1%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVG--DKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNP 3207
            A+S+NA E L     SVP++G   +++LGIG+D RSLFTPAS++AL+KAAG ++V++LNP
Sbjct: 97   AFSDNAGEMLDLMPQSVPSLGAGQQDLLGIGSDARSLFTPASASALEKAAGAIDVSMLNP 156

Query: 3206 ILVHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPM-TAAGALQSYKLASKAISRLQSM 3030
            I VH K S KPF AI+HRID  LV+D EPV+  DT + +AAGALQS+KLA+KAISRLQS+
Sbjct: 157  ISVHCKTSAKPFYAIVHRIDVGLVLDLEPVKASDTSVGSAAGALQSHKLAAKAISRLQSL 216

Query: 3029 PSGNISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDV 2850
            P G+I LLCD VV+EV ELTGYDRVMAYKFH+D+HGEV++EIRRSDLEPYLGLHYPATD+
Sbjct: 217  PGGDIGLLCDTVVEEVRELTGYDRVMAYKFHDDEHGEVVAEIRRSDLEPYLGLHYPATDI 276

Query: 2849 PQASRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSV 2670
            PQASRFLFMKNRVRMICDC + PV++ QDK L++ +S  GSTLRAPHGCHAQYM NMGSV
Sbjct: 277  PQASRFLFMKNRVRMICDCSAAPVKISQDKDLRQPISLAGSTLRAPHGCHAQYMGNMGSV 336

Query: 2669 ASLVMAVIVNXXXXXXXXXEGQS-------QPKGRKLWGLVVCHHTSPRFVPFPLRYACE 2511
            ASLVMAVI+N          G         Q KGRKLWG+VVCHHTSPR VPFPLR ACE
Sbjct: 337  ASLVMAVIINDNDDEYRSSSGGGGGGGGAYQQKGRKLWGMVVCHHTSPRSVPFPLRSACE 396

Query: 2510 FMMQVFSIQLNKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGA 2331
            F+MQVF +QLN EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGA
Sbjct: 397  FLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGA 456

Query: 2330 ALYYGKKFWLLGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGM 2151
            ALYYGK+FWLLG+TP+E Q+ DI  WL E H DSTGLSTDSLA+AGYP A+ L + +CGM
Sbjct: 457  ALYYGKRFWLLGVTPSEAQIKDIADWLLEHHKDSTGLSTDSLADAGYPGAASLGDEVCGM 516

Query: 2150 AAVRINLGDFLFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPW 1971
            AA +I   DFLFWFR+HTAKEIKWGGAKHDP+++DD RKMHPRSSF+AFLEVVK RSLPW
Sbjct: 517  AAAKITAKDFLFWFRSHTAKEIKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKRRSLPW 576

Query: 1970 EDVEMDAIHSLQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVR 1791
            EDVEMDAIHSLQLILR S    D  D K       I+++LN+LKL+ MDEL+ V NEMVR
Sbjct: 577  EDVEMDAIHSLQLILRGSFHDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVR 631

Query: 1790 LIETATVPILAVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSL 1614
            LIETAT PILAVDS+G +NGWN K AELTG+   E +G  L  +LV + S   V+R+L L
Sbjct: 632  LIETATAPILAVDSSGFINGWNAKVAELTGLPVTEAMGRSLAKDLVLQESADMVERLLYL 691

Query: 1613 ALEGQEESNIQIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMD 1434
            AL+G EE N++++LKT G  ++   V L+VNACASRDV DNVVGVCFV QDVTGQKVVMD
Sbjct: 692  ALQGDEEQNVELKLKTFGVQKDKEAVILVVNACASRDVSDNVVGVCFVGQDVTGQKVVMD 751

Query: 1433 KFTRIQGDYKAIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVF 1254
            KFTRIQGDYKAIVQNP+PLIPPIFG DEFG+CSEWN AMEKL+GW+RE ++ KML+GE+F
Sbjct: 752  KFTRIQGDYKAIVQNPNPLIPPIFGADEFGYCSEWNPAMEKLSGWKREEVLGKMLVGEIF 811

Query: 1253 GTRAVCCRLKGQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDG 1074
            G + + CRLKGQ+++TK  IVLNSA  GQ+TEKFP         +VEALL+A KR D +G
Sbjct: 812  GIQMMYCRLKGQDAVTKFMIVLNSAADGQDTEKFPFAFFDRQGKYVEALLTATKRADAEG 871

Query: 1073 RITGVFCFLHIASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLER 894
             ITGVFCFLHIASAELQQAL V+R +E+ +            EIKNPL GI F + L+E 
Sbjct: 872  SITGVFCFLHIASAELQQALTVQRATEKVALSKLKELAYIRQEIKNPLYGIMFTRTLMET 931

Query: 893  SGLKEEQTQLVKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMM 714
            + L E+Q Q V+   +C+KQI KILDDMDLESIEDGYLELDT EF +G ++D VI+QGM+
Sbjct: 932  TDLSEDQKQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFMMGTVMDAVISQGMI 991

Query: 713  ECEEKGLEIFHDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRR 537
              +EK L++  +TP+E+    LYGDQ+RLQQ+L++FLLN I+FTP  +  + IK++++R+
Sbjct: 992  TSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENWVGIKVATSRK 1051

Query: 536  NLGGGVYVLDLEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQY 357
             LGGGV+V+ LEFRITHPG GLPEELV++M      M+Q+G GL +CRKLVKLMNG+V+Y
Sbjct: 1052 RLGGGVHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVEY 1111

Query: 356  LRGGGTSCFVIIVELATNQSD 294
            LR  G + F++ +EL   Q D
Sbjct: 1112 LREPGKNFFLVSLELPLAQRD 1132


>ref|XP_002991641.1| hypothetical protein SELMODRAFT_161807 [Selaginella moellendorffii]
            gi|300140490|gb|EFJ07212.1| hypothetical protein
            SELMODRAFT_161807 [Selaginella moellendorffii]
          Length = 1142

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 676/1040 (65%), Positives = 821/1040 (78%), Gaps = 11/1040 (1%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVG--DKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNP 3207
            A+S+NA E L     SVP++G   +++LGIG+D RSLFTPAS++AL+KAAG ++V++LNP
Sbjct: 97   AFSDNAGEMLDLMPQSVPSLGAGQQDLLGIGSDARSLFTPASASALEKAAGAIDVSMLNP 156

Query: 3206 ILVHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPM-TAAGALQSYKLASKAISRLQSM 3030
            I VH K S KPF AI+HRID  LV+D EPV+  DT + +AAGALQS+KLA+KAISRLQS+
Sbjct: 157  ISVHCKTSAKPFYAIVHRIDVGLVLDLEPVKASDTSVGSAAGALQSHKLAAKAISRLQSL 216

Query: 3029 PSGNISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDV 2850
            P G+I LLCD VV+EV ELTGYDRVMAYKFH+D+HGEV++EIRRSDLEPYLGLHYPATD+
Sbjct: 217  PGGDIGLLCDTVVEEVRELTGYDRVMAYKFHDDEHGEVVAEIRRSDLEPYLGLHYPATDI 276

Query: 2849 PQASRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSV 2670
            PQASRFLFMKNRVRMICDC + PV++ QDK L++ +S  GSTLRAPHGCHAQYM NMGSV
Sbjct: 277  PQASRFLFMKNRVRMICDCSAAPVKISQDKDLRQPISLAGSTLRAPHGCHAQYMGNMGSV 336

Query: 2669 ASLVMAVIVNXXXXXXXXXEGQS------QPKGRKLWGLVVCHHTSPRFVPFPLRYACEF 2508
            ASLVMAVI+N          G        Q KGRKLWG+VVCHHTSPR VPFPLR ACEF
Sbjct: 337  ASLVMAVIINDNDDEYRSSSGGGGGGGAYQQKGRKLWGMVVCHHTSPRSVPFPLRSACEF 396

Query: 2507 MMQVFSIQLNKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAA 2328
            +MQVF +QLN EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV C+GAA
Sbjct: 397  LMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCNGAA 456

Query: 2327 LYYGKKFWLLGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMA 2148
            LYYGK+FWLLG+TP+E Q+ DI  WL E H DSTGLSTDSLA+AGYP A+ L + +CGMA
Sbjct: 457  LYYGKRFWLLGVTPSEAQIKDIADWLLEHHKDSTGLSTDSLADAGYPGAASLGDEVCGMA 516

Query: 2147 AVRINLGDFLFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWE 1968
            A +I   DFLFWFR+HTAKEIKWGGAKHDP+++DD RKMHPRSSF+AFLEVVK RSLPWE
Sbjct: 517  AAKITAKDFLFWFRSHTAKEIKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKRRSLPWE 576

Query: 1967 DVEMDAIHSLQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRL 1788
            DVEMDAIHSLQLILR S    D  D K       I+++LN+LKL+ MDEL+ V NEMVRL
Sbjct: 577  DVEMDAIHSLQLILRGSFHDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVRL 631

Query: 1787 IETATVPILAVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLA 1611
            IETAT PILAVDS+G +NGWN K AELTG+   E +G  L  +LV + S   V+R+L LA
Sbjct: 632  IETATAPILAVDSSGFINGWNAKVAELTGLPVTEAMGRSLAKDLVLQESADMVERLLYLA 691

Query: 1610 LEGQEESNIQIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDK 1431
            L+G EE N++++LKT G  ++   V L+VNACASRDV DNVVGVCFV QDVTGQKVVMDK
Sbjct: 692  LQGDEEQNVELKLKTFGVQKDKEAVILVVNACASRDVSDNVVGVCFVGQDVTGQKVVMDK 751

Query: 1430 FTRIQGDYKAIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFG 1251
            FTRIQGDYKAIVQNP+PLIPPIFG DEFG+CSEWN AMEKL+GW+RE ++ KML+GE+FG
Sbjct: 752  FTRIQGDYKAIVQNPNPLIPPIFGADEFGYCSEWNPAMEKLSGWKREEVLGKMLVGEIFG 811

Query: 1250 TRAVCCRLKGQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGR 1071
             + + CRLKGQ+++TK  IVLNSA  GQ+TEKFP         +VEALL+A KR D +G 
Sbjct: 812  IQMMYCRLKGQDAVTKFMIVLNSAADGQDTEKFPFAFFDRQGKYVEALLTATKRADAEGS 871

Query: 1070 ITGVFCFLHIASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERS 891
            ITGVFCFLHIASAELQQAL V+R +E+ +            EIKNPL GI F + L+E +
Sbjct: 872  ITGVFCFLHIASAELQQALTVQRATEKVALSKLKELAYIRQEIKNPLYGIMFTRTLMETT 931

Query: 890  GLKEEQTQLVKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMME 711
             L E+Q Q V+   +C+KQI KILDDMDLESIEDGYLELDT EF +G ++D VI+QGM+ 
Sbjct: 932  DLSEDQKQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFMMGTVMDAVISQGMIT 991

Query: 710  CEEKGLEIFHDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRN 534
             +EK L++  +TP+E+    LYGDQ+RLQQ+L++FLLN I+FTP  +  + IK++++R+ 
Sbjct: 992  SKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENWVGIKVATSRKR 1051

Query: 533  LGGGVYVLDLEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYL 354
            LGGGV+V+ LEFRITHPG GLPEELV++M      M+Q+G GL +CRKLVKLMNG+V+YL
Sbjct: 1052 LGGGVHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVEYL 1111

Query: 353  RGGGTSCFVIIVELATNQSD 294
            R  G + F++ +EL   Q D
Sbjct: 1112 REPGKNFFLVSLELPLAQRD 1131


>ref|XP_001761145.1| phytochrome 5a [Physcomitrella patens] gi|162687485|gb|EDQ73867.1|
            phytochrome 5a [Physcomitrella patens]
          Length = 1123

 Score = 1331 bits (3444), Expect = 0.0
 Identities = 657/1025 (64%), Positives = 816/1025 (79%), Gaps = 2/1025 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENAL+ L     +VP+VG ++VLGIGTD RSLFTP+S+AAL++A    +++++NP+ 
Sbjct: 98   AYSENALDMLDLMPQAVPSVGQQDVLGIGTDSRSLFTPSSAAALERATQQSDLSMVNPVS 157

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VHS++SGKPF AILHRID  +VMDFEPVRP D  +++AG + S+KLA+KAISRLQS+P G
Sbjct: 158  VHSRSSGKPFYAILHRIDVGIVMDFEPVRPNDVVVSSAGTIHSHKLAAKAISRLQSLPGG 217

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAYKFHED+HGEV++EIRRSDLEPYLGLHYPATD+PQA
Sbjct: 218  DIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQA 277

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNR RMI DCY+PPV+VIQDK L++ L+  GSTLRAPHGCHAQYM NMGS+AS+
Sbjct: 278  SRFLFMKNRFRMIVDCYAPPVKVIQDKDLRQPLTLAGSTLRAPHGCHAQYMGNMGSIASV 337

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
             MAV+VN          G SQ K R+LWGLVVCHHTS R + FPLR ACEF+MQVF +QL
Sbjct: 338  TMAVVVNDQEDD-----GGSQ-KARRLWGLVVCHHTSARMISFPLRSACEFLMQVFGLQL 391

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYG +FWL
Sbjct: 392  NMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGNRFWL 451

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LGITP+E Q+ +I  WL E H DSTGLSTDSLA+AGYP A+ L +A+CGMAA RI   DF
Sbjct: 452  LGITPSEQQIKEIADWLLECHKDSTGLSTDSLADAGYPGANLLGDAVCGMAAARITPKDF 511

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHD ++RDD RKM PRSSF AFLEVVK RS+PWED+EMDAIHS
Sbjct: 512  LFWFRSHTAKEIKWGGAKHDADDRDDGRKMTPRSSFNAFLEVVKRRSVPWEDIEMDAIHS 571

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL+ MDEL+ V NEMVRLIETAT PIL
Sbjct: 572  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVRLIETATTPIL 626

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS+G +NGWN K AELTG+S  + +G  LV +L+ E SV  V+R+L LAL+G+EE N+
Sbjct: 627  AVDSSGFINGWNAKVAELTGLSVGDAMGRSLVKDLILEESVEDVQRLLYLALQGEEEQNV 686

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I L+T G  +  G V LIVNAC+SRDV++NVVGVCFV QDVTGQK++ DKFTRI GDYK
Sbjct: 687  EIRLRTFGPQKAKGAVILIVNACSSRDVQENVVGVCFVGQDVTGQKMLHDKFTRIHGDYK 746

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            +IVQNP+PLIPPIFG+D+ G+C+EW+ +MEKLTGW+R+ ++ KML+GEVFG   +CCRLK
Sbjct: 747  SIVQNPNPLIPPIFGSDDLGYCTEWSPSMEKLTGWKRDEVLGKMLVGEVFGMHLMCCRLK 806

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
            GQ+++TK  IVLN+AM GQ+T+K+P         FVEALL+ANKR D DG ITGVFCFLH
Sbjct: 807  GQDAVTKFMIVLNNAMDGQDTDKYPFSFFDRQGKFVEALLTANKRTDADGYITGVFCFLH 866

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
            IAS EL QAL V+R +E+ +            EIKNPL GI F + L+E + L ++Q Q 
Sbjct: 867  IASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMEDTDLSDDQKQF 926

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            +  S +C++Q+ KILDDMDLESIEDGYLEL+TAEF +G ++D V++QGM+   EKGL++ 
Sbjct: 927  MDTSAVCERQLRKILDDMDLESIEDGYLELETAEFEMGSMMDAVVSQGMVTSREKGLQLI 986

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+ + CL+GDQ+RLQQ+L++FLLN ++FTP  +  + IK+ +T+R LGGG +V+ 
Sbjct: 987  RETPREIKDMCLFGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKVVATKRRLGGGFHVVH 1046

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR+THPG GLPEEL+ +M      M+Q+G GL +CRKLVKLMNG+VQY R  G S F+
Sbjct: 1047 LEFRVTHPGSGLPEELIHEMFDRGRGMTQEGLGLNMCRKLVKLMNGNVQYKRETGKSYFL 1106

Query: 326  IIVEL 312
            + +EL
Sbjct: 1107 VTLEL 1111


>sp|Q01549.1|PHY1_SELMA RecName: Full=Phytochrome 1 gi|22603|emb|CAA43698.1| phytochrome
            [Selaginella martensii]
          Length = 1134

 Score = 1324 bits (3426), Expect = 0.0
 Identities = 666/1034 (64%), Positives = 811/1034 (78%), Gaps = 5/1034 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGD--KEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNP 3207
            A+S+NA E L     SVP++G   ++VL IGTD R+LFT A+SA L+KAAG V++++LNP
Sbjct: 97   AFSDNAGEMLDLMPQSVPSLGSGQQDVLTIGTDARTLFTAAASA-LEKAAGAVDLSMLNP 155

Query: 3206 ILVHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPM-TAAGALQSYKLASKAISRLQSM 3030
            I V SK S KPF AI+HRID  LVMD EPV+  DT + +AAGALQS+KLA+KAISRLQS+
Sbjct: 156  IWVQSKTSAKPFYAIVHRIDVGLVMDLEPVKASDTRVGSAAGALQSHKLAAKAISRLQSL 215

Query: 3029 PSGNISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDV 2850
            P G+I LLCD VV+EV ++TGYD VMAYKFHED+HGEV++EIRRSDLEPYLGLHYPATD+
Sbjct: 216  PGGDIGLLCDTVVEEVRDVTGYDLVMAYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDI 275

Query: 2849 PQASRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSV 2670
            PQASRFLFMKNRVRMICDC +PPV++ QDK L++ +S  GSTLRAPHGCHAQYM NMGSV
Sbjct: 276  PQASRFLFMKNRVRMICDCSAPPVKITQDKELRQPISLAGSTLRAPHGCHAQYMGNMGSV 335

Query: 2669 ASLVMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFS 2490
            ASLVMA+I+N          G  Q KGR+LWGLVVCHHTSPR VPF LR ACEF+MQVF 
Sbjct: 336  ASLVMAMIINDNDEPSGGGGGGGQHKGRRLWGLVVCHHTSPRSVPF-LRSACEFLMQVFG 394

Query: 2489 IQLNKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKK 2310
            +QLN E  +A  +REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+
Sbjct: 395  LQLNMEAAVAAHVREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKR 454

Query: 2309 FWLLGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINL 2130
            FWLLGITP+E Q+ DI  WL E H DSTGLSTDSLA+AGYP A+ L + +CGMAA +I  
Sbjct: 455  FWLLGITPSEAQIKDIAEWLLEHHKDSTGLSTDSLADAGYPGAASLGDEVCGMAAAKITA 514

Query: 2129 GDFLFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDA 1950
             DFLFWFR+HTAKE+KWGGAKHDP+++DD RKMHPRSSF+AFLEVVK RSLPWEDVEMDA
Sbjct: 515  KDFLFWFRSHTAKEVKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDA 574

Query: 1949 IHSLQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATV 1770
            IHSLQLILR S +  D  D K       I+++LN+LKL+ MDEL+ V NEMVRLIETAT 
Sbjct: 575  IHSLQLILRGSFQDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVRLIETATA 629

Query: 1769 PILAVDSNGLVNGWNKKAAELTGMSAEEVLGEPLVN-LVEETSVGTVKRILSLALEGQEE 1593
            PILAVDS+G +NGWN K A++TG+   E +G  L   LV   S   V+R+L LAL+G EE
Sbjct: 630  PILAVDSSGFINGWNAKVADVTGLPVTEAMGRSLAKELVLHESADMVERLLYLALQGDEE 689

Query: 1592 SNIQIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQG 1413
             N++++LKT G  ++   V L+VNACASRDV DNVVGVCFV QDVTGQKVVMDKFTRIQG
Sbjct: 690  QNVELKLKTFGGQKDKEAVILVVNACASRDVSDNVVGVCFVGQDVTGQKVVMDKFTRIQG 749

Query: 1412 DYKAIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCC 1233
            DYKAIVQNP+PLIPPIFG DEFG+CSEWN AMEKL+GW RE ++ KML+GE+FG + + C
Sbjct: 750  DYKAIVQNPNPLIPPIFGADEFGYCSEWNPAMEKLSGWRREEVLGKMLVGEIFGIQMMYC 809

Query: 1232 RLKGQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFC 1053
            RLKGQ+++TK  IVLNSA  GQ+TEKFP         +VEALL+A KR D +G ITGVFC
Sbjct: 810  RLKGQDAVTKFMIVLNSAADGQDTEKFPFAFFDRQGKYVEALLTATKRADAEGSITGVFC 869

Query: 1052 FLHIASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQ 873
            FLHIASAELQQAL V+R +E+ +            EIKNPL GI F + L+E + L E+Q
Sbjct: 870  FLHIASAELQQALTVQRATEKVALSKLKELAYIRQEIKNPLYGIMFTRTLMETTDLSEDQ 929

Query: 872  TQLVKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGL 693
             Q V+   +C+KQI KILDDMDLESIEDGYLELDT EF +G ++D VI+QGM+  +EK L
Sbjct: 930  KQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFMMGTVMDAVISQGMITSKEKNL 989

Query: 692  EIFHDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVY 516
            ++  +TP+E+    LYGDQ+RLQQ+L++FLLN I+FTP  +  + IK++++R+ LGG V+
Sbjct: 990  QLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENWVGIKVATSRKRLGGVVH 1049

Query: 515  VLDLEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTS 336
            V+ LEFRITHPG GLPEELV++M      M+Q+G GL +CRKLVKLMNG+V+Y+R  G +
Sbjct: 1050 VMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVEYIREAGKN 1109

Query: 335  CFVIIVELATNQSD 294
             F++ +EL   Q D
Sbjct: 1110 YFLVSLELPLAQRD 1123


>ref|XP_001754366.1| phytochrome 5c [Physcomitrella patens] gi|162694468|gb|EDQ80816.1|
            phytochrome 5c [Physcomitrella patens]
          Length = 1124

 Score = 1318 bits (3411), Expect = 0.0
 Identities = 651/1025 (63%), Positives = 811/1025 (79%), Gaps = 2/1025 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L    H+VP+VG ++VLGIG D RSLFTP+S++AL++AA   +++++NPI 
Sbjct: 98   AYSENAPEMLDLVPHAVPSVGQQDVLGIGADARSLFTPSSASALERAASTSDLSMVNPIS 157

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VHS++SGKPF AI+HRID  +V+DFEPVRP D  ++ AGAL S+KLA+KA++RLQS+P G
Sbjct: 158  VHSRSSGKPFYAIVHRIDVGVVIDFEPVRPNDVIISTAGALHSHKLAAKAVARLQSLPGG 217

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAYKFH+D+HGEV++EIRRSDLE YLGLHYP+TD+PQA
Sbjct: 218  DIGLLCDAVVEEVRELTGYDRVMAYKFHDDEHGEVLAEIRRSDLESYLGLHYPSTDIPQA 277

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVRMI DC +PPV+VIQDK L++ ++  GSTLRAPHGCHAQYM NMGSVAS+
Sbjct: 278  SRFLFMKNRVRMIADCCAPPVKVIQDKDLRQPITLAGSTLRAPHGCHAQYMGNMGSVASI 337

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
             +AVIVN             Q KGR+LWGLVVCHHTS R + FPLR ACEF+MQVF +QL
Sbjct: 338  TLAVIVNDQEEDFGV-----QQKGRRLWGLVVCHHTSARTISFPLRSACEFLMQVFGLQL 392

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVEL  Q++EK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+FWL
Sbjct: 393  NMEVELQAQVKEKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKRFWL 452

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LG TPTE Q+ +I  WL E H DSTGLSTDSLA+AGYP A+ L +A+CGMAA RI   DF
Sbjct: 453  LGTTPTEQQITEIADWLLEYHKDSTGLSTDSLADAGYPGANLLGDAVCGMAAARITPKDF 512

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHD +E+DD RKM PRSSF AFLEVVK RS+PWED+EMDAIHS
Sbjct: 513  LFWFRSHTAKEIKWGGAKHDADEKDDGRKMAPRSSFNAFLEVVKRRSVPWEDIEMDAIHS 572

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++L++LKL+ MDEL+ V NEMVRLIETATVPIL
Sbjct: 573  LQLILRGSFQDIDDSDGKTM-----IHARLHDLKLQGMDELSTVANEMVRLIETATVPIL 627

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS+G +NGWN K AELTG+   + +G  LV +L+ E SV  V+R+L LAL+G+EE N+
Sbjct: 628  AVDSSGFINGWNAKVAELTGLPVGDAMGRSLVKDLILEESVEAVERLLYLALQGEEEQNV 687

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            ++ LKT G+ +  G + LIVNAC+SRDV++NVVGVCFV QDVTGQK+V DKFTRI GDYK
Sbjct: 688  EVRLKTFGQQKSKGVLILIVNACSSRDVQENVVGVCFVGQDVTGQKMVHDKFTRIHGDYK 747

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            +IVQNP+PLIPPIFG DE G+C+EW+ +MEKLTGW+RE ++ KML+GEVFG + +CCRLK
Sbjct: 748  SIVQNPNPLIPPIFGGDELGYCTEWSPSMEKLTGWKREEVLGKMLVGEVFGVQLMCCRLK 807

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
            GQ+++TK  IVLN+AM GQ+T+KFP         FVEALL+ANKR D D  ITGVFCFLH
Sbjct: 808  GQDAVTKFMIVLNNAMDGQDTDKFPFSFFDRQGKFVEALLTANKRTDADDYITGVFCFLH 867

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
             AS EL QAL V+R +E+ +            EIKNPL GI F + L+E + L EEQ Q 
Sbjct: 868  TASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMEDTDLSEEQKQF 927

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            +  S +C++Q+ KILDDMDLESIEDGYLEL+TAEF +G ++D V++QGM+   EKGL++ 
Sbjct: 928  MDTSAVCERQLRKILDDMDLESIEDGYLELETAEFDMGSMMDAVVSQGMITSREKGLQLI 987

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+   CL+GDQ+RLQQ+L+++LLN ++FTP  +  + IK+ ST++ L GG +V+ 
Sbjct: 988  RETPREIKGMCLFGDQVRLQQVLADYLLNAVRFTPSSEGWVGIKVVSTKKRLVGGFHVVH 1047

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR+THPG GLPEELV +M      M+Q+G GL +CRKLVKLMNG+V+Y+R  G S F+
Sbjct: 1048 LEFRVTHPGSGLPEELVCEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVKYIRDAGKSYFL 1107

Query: 326  IIVEL 312
            + +EL
Sbjct: 1108 VNLEL 1112


>gb|ABW91071.1| phytochrome-4 [Ceratodon purpureus]
          Length = 1125

 Score = 1316 bits (3406), Expect = 0.0
 Identities = 653/1031 (63%), Positives = 813/1031 (78%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP+VG +EVLGIGTD RSLFTP+S AAL++AA   ++ ++NPI 
Sbjct: 99   AYSENAPELLDLMPQAVPSVGQQEVLGIGTDARSLFTPSSVAALERAASTHDLTMVNPIS 158

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VH+++SGKPF AI+HRID  +VMDFEPVRP D  ++ AG L S+KLA+KAI+RLQS+P G
Sbjct: 159  VHTRSSGKPFYAIVHRIDVGVVMDFEPVRPNDVVISTAGTLHSHKLAAKAIARLQSLPGG 218

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAYKFH+D+HGEV++EIRRSDLE YLGLHYP+TD+PQA
Sbjct: 219  DIGLLCDTVVEEVRELTGYDRVMAYKFHDDEHGEVLAEIRRSDLESYLGLHYPSTDIPQA 278

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVRMI DC +PP +VIQDK L++ ++  GSTLRAPHGCHAQYM NMGSVAS+
Sbjct: 279  SRFLFMKNRVRMIADCCAPPXKVIQDKDLRQPVTLAGSTLRAPHGCHAQYMGNMGSVASI 338

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
             +AVIVN             Q KGR+LWGLVVCHHTS R + +PLR ACEF+MQVF +QL
Sbjct: 339  TLAVIVNDQEDDFGV-----QQKGRRLWGLVVCHHTSARTISYPLRCACEFLMQVFGLQL 393

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVEL  QMREK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYY  +FWL
Sbjct: 394  NMEVELQAQMREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYNDRFWL 453

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LGITP+E Q+ D+  WL E H DSTGLSTDSLA+AGYP A+ L +A+CGMAA RI+  DF
Sbjct: 454  LGITPSEQQIKDVAEWLLENHKDSTGLSTDSLADAGYPSANLLGDAVCGMAAARISPSDF 513

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAK + +E+DD RKM PRSS  AFLEVVK RSLPWED+EMDAIHS
Sbjct: 514  LFWFRSHTAKEIKWGGAKQEADEKDDGRKMTPRSSLNAFLEVVKRRSLPWEDIEMDAIHS 573

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S ++ D GD   +SKS+ I+++L+++KL+ MDEL+ V NEMVRLIETAT PIL
Sbjct: 574  LQLILRGSFQEID-GD---SSKSM-IHARLHDMKLQGMDELSTVANEMVRLIETATAPIL 628

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLVN-LVEETSVGTVKRILSLALEGQEESNI 1584
            AVDSNG +NGWN K AELTG+   + +G  LVN L+ + SV  V+R+L LAL+G+EE NI
Sbjct: 629  AVDSNGFINGWNAKVAELTGLPVGDAMGRSLVNDLILDESVEVVERLLYLALQGEEEQNI 688

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +++L+T G  +  G V LIVNAC+SRDV++NVVGVCFV QDVTGQK+V DKFTRI GDYK
Sbjct: 689  EVQLRTFGPQKSKGAVILIVNACSSRDVQENVVGVCFVGQDVTGQKMVHDKFTRIHGDYK 748

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            +IVQNP+PLIPPIFG+DE G C+EW+ +MEKLTGW+RE ++ KML+GEVFG + +CCRLK
Sbjct: 749  SIVQNPNPLIPPIFGSDELGSCTEWSPSMEKLTGWKREEVLGKMLVGEVFGMQQMCCRLK 808

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
            GQ+++TK  IV+N+AM GQ+T+K+P         FVEALL+ANKR D DG ITGVFCFLH
Sbjct: 809  GQDAVTKFMIVINNAMDGQDTDKYPFSFFDRNGKFVEALLTANKRTDADGYITGVFCFLH 868

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
            IAS EL QAL V+R +E+ +            EIKNPL GI F + L+E + L +EQ Q 
Sbjct: 869  IASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMEDTDLSDEQKQF 928

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            +  S +C++Q+ KILDDMDLESIEDGYLEL+TAEF +G ++D V++QGM+   EKGL++ 
Sbjct: 929  MDTSAVCERQLRKILDDMDLESIEDGYLELETAEFEMGSMMDAVVSQGMVTSREKGLQLI 988

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+   CL+GDQ+RLQQ+L++FLLN ++FTP  +  + IK+  T++ LGGG +V+ 
Sbjct: 989  RETPREIKNMCLFGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKVVPTKKRLGGGFHVVH 1048

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR+THPG GLPEELV +M      M+Q+G GL +CRKLVKLMNG+V+Y+R  G S F+
Sbjct: 1049 LEFRVTHPGSGLPEELVHEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVKYIRDTGKSYFL 1108

Query: 326  IIVELATNQSD 294
            + +EL     D
Sbjct: 1109 VNLELPLTVRD 1119


>ref|XP_001767224.1| phytochrome 5b3 [Physcomitrella patens] gi|162681479|gb|EDQ67905.1|
            phytochrome 5b3 [Physcomitrella patens]
          Length = 1131

 Score = 1313 bits (3399), Expect = 0.0
 Identities = 651/1031 (63%), Positives = 804/1031 (77%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP+VG KEVLGIGTD R LFTP+S++ L++AA   ++ ++NPI 
Sbjct: 98   AYSENAPEMLDLMPQAVPSVGLKEVLGIGTDARLLFTPSSASTLERAAATSDLTMVNPIS 157

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VHS+ SGKPF AI+HRID  +V+DFEPVR  D  ++ AGAL S+KLA+KA+SRLQS+P G
Sbjct: 158  VHSRNSGKPFYAIVHRIDVGIVIDFEPVRSNDVVISTAGALHSHKLAAKAVSRLQSLPGG 217

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAYKFH+D+HGEV++EIRRSDLE YLGLHYP+TD+PQA
Sbjct: 218  DIGLLCDAVVEEVRELTGYDRVMAYKFHDDEHGEVLAEIRRSDLESYLGLHYPSTDIPQA 277

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVRMI DC +PPV+VIQDK L++ ++  GSTLRAPHGCHAQYM NMGSVAS+
Sbjct: 278  SRFLFMKNRVRMIADCCAPPVKVIQDKDLRQPITLAGSTLRAPHGCHAQYMGNMGSVASI 337

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
             +AVIV+             Q KGR+LWGLVVCHHTSPR + FPLR ACEF+MQVF +QL
Sbjct: 338  TLAVIVHDQEEDFGV-----QQKGRRLWGLVVCHHTSPRTISFPLRSACEFLMQVFGLQL 392

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVEL  QM+EK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYY  +FWL
Sbjct: 393  NMEVELQAQMKEKHILRTQTLLCDMLLRDAPVGIVSQSPNIMDLVKCDGAALYYENQFWL 452

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LG TP+E Q+ +I AWL E H DSTGLSTDSLA+AGYP A+ L +A+CGMAA RI+  DF
Sbjct: 453  LGTTPSEEQIEEIAAWLLEHHKDSTGLSTDSLADAGYPGANLLGDAVCGMAAARISSKDF 512

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            L WFR+H+AKEIKWGGAKHD  +RDDSRKM PRSSF AFLEVVK RS+PWED+EMDAIHS
Sbjct: 513  LLWFRSHSAKEIKWGGAKHDAEDRDDSRKMTPRSSFNAFLEVVKRRSVPWEDIEMDAIHS 572

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D    K       I+S+L++LKL+ MDEL+ V NEMVRLIETAT PIL
Sbjct: 573  LQLILRGSFQDVDGSGGKTM-----IHSRLHDLKLQGMDELSTVANEMVRLIETATAPIL 627

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDSNG +NGWN K AELTG+   E +G  LV +L+ E  V  V+R+L LAL+G+EE NI
Sbjct: 628  AVDSNGFINGWNAKVAELTGLPVGEAMGRSLVKDLILEEYVEVVERLLYLALQGEEEQNI 687

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            ++ LKT G  +  G V L+VNAC+SRDV++NVVGVCFV QDVTGQK+V DKFTRI GDYK
Sbjct: 688  EVSLKTFGAQKAKGAVILVVNACSSRDVQENVVGVCFVGQDVTGQKMVHDKFTRIHGDYK 747

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            +IVQ+P+PLIPPIFG+DE G+C EW+ +MEKLTGW+RE ++ KML+GE+FG   +CCRLK
Sbjct: 748  SIVQSPNPLIPPIFGSDELGYCIEWSPSMEKLTGWKREEVLGKMLVGEIFGVHQMCCRLK 807

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
            GQ+++TK  IVLN+AM GQ+T+K+P          VEALL+ANKR D DG ITGVFCFLH
Sbjct: 808  GQDAVTKFMIVLNNAMDGQDTDKYPFSFHDRQGKLVEALLTANKRTDADGYITGVFCFLH 867

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
            IAS EL QAL V+R +E+ +            EIKNPL GI F + L+E + L +EQ Q 
Sbjct: 868  IASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMEDTDLSDEQKQY 927

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            +  S +C++Q+ KILDDMDLESIEDGYLEL+T EF +G ++D V++QGM+   EKGL++ 
Sbjct: 928  MDTSAVCERQLRKILDDMDLESIEDGYLELETMEFEMGSMMDAVVSQGMVTSREKGLQLI 987

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+   CL+GDQ+RLQQ+L++FLLN ++FTP  +  + IK+  TR+ LGGG +V+ 
Sbjct: 988  RETPREIQGMCLFGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKVVPTRKRLGGGFHVVH 1047

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR+THPG GLPEELV +M      M+Q+G GL +CRKLVKLMNG+V+Y+R  G SCF+
Sbjct: 1048 LEFRVTHPGSGLPEELVHEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVKYIRDTGKSCFL 1107

Query: 326  IIVELATNQSD 294
            + +EL    SD
Sbjct: 1108 VSLELPLTVSD 1118


>sp|Q39557.1|PHY2_CERPU RecName: Full=Phytochrome 2 gi|1314837|gb|AAB67863.1| phytochrome
            photoreceptor CERPU;PHY0;2 [Ceratodon purpureus]
          Length = 1121

 Score = 1306 bits (3380), Expect = 0.0
 Identities = 658/1031 (63%), Positives = 798/1031 (77%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP++G+ +VLGIGTD+R+LFTP+S AAL+KAA   +++LLNPI 
Sbjct: 94   AYSENASEFLDLMPQAVPSMGEMDVLGIGTDIRTLFTPSSGAALEKAAATQDISLLNPIT 153

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VH + SGKP  AI HRID  +V+DFE V+  D  ++AAGALQS+KLA+KAI+RLQ++P G
Sbjct: 154  VHCRRSGKPLYAIAHRIDIGIVIDFEAVKMNDVSVSAAGALQSHKLAAKAITRLQALPGG 213

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAYKFHED+HGEV++EIRR DLEPYLGLHYPATD+PQA
Sbjct: 214  DIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVVAEIRRMDLEPYLGLHYPATDIPQA 273

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVR+I DC + PV++IQD  +K+ +S  GSTLRAPHGCHAQYM NMGS+ASL
Sbjct: 274  SRFLFMKNRVRVIADCCASPVKLIQDPDIKQPVSLAGSTLRAPHGCHAQYMGNMGSIASL 333

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAVI+N          G  Q +GRKLWGLVVCHHTSPR VPFPLR ACEF+MQVF +QL
Sbjct: 334  VMAVIINDNEEDSR---GAIQ-RGRKLWGLVVCHHTSPRTVPFPLRSACEFLMQVFGMQL 389

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+FWL
Sbjct: 390  NMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQTPNIMDLVKCDGAALYYGKRFWL 449

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LG TPTENQ+ DI  WL E H DSTGLSTDSLA+A YP A  L +A+CGMAA +I   DF
Sbjct: 450  LGTTPTENQIKDIAEWLLEYHKDSTGLSTDSLADANYPGAHLLGDAVCGMAAAKITAKDF 509

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKE+KWGGAKHDP E+DD RKMHPRSSF+AFLEVVK RSLPWEDVEMDAIHS
Sbjct: 510  LFWFRSHTAKEVKWGGAKHDPAEKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHS 569

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL  MDEL+ V NEMVRLIETAT PIL
Sbjct: 570  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLHGMDELSVVANEMVRLIETATAPIL 624

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS G++NGWN K A +TG+   E +G  LV +LV + SV  V+R+L LA +G+EE N+
Sbjct: 625  AVDSTGMINGWNAKIAHVTGLPVSEAMGRSLVKDLVLDESVVVVERLLYLASQGEEEQNV 684

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+LKT G   E   V LIVNAC+SRDV D+VVGVCFV QDVTGQK+ MDKFTRIQGDYK
Sbjct: 685  EIKLKTFGTQTEKEAVILIVNACSSRDVSDSVVGVCFVGQDVTGQKMFMDKFTRIQGDYK 744

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
             IV+NP PLIPPIFG DE+G+C EWN AME LTGW+ + ++ K+L+GE+FG   +CCRLK
Sbjct: 745  TIVKNPHPLIPPIFGGDEYGYCFEWNPAMEALTGWKHDEVVGKLLVGEIFGMEMMCCRLK 804

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
             Q+SMTK  I LN+AM G  T+KF          FVEALLS NKR + DG ITGVFCFL 
Sbjct: 805  SQDSMTKFMISLNNAMDGTNTDKFSFSFCNREGKFVEALLSTNKRTNADGVITGVFCFLQ 864

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
            IAS+ELQQAL V+R +E+ +            EIKNPL GI+F ++LLE + L ++Q Q 
Sbjct: 865  IASSELQQALTVQRATEKVAIAKLKELAYIRQEIKNPLCGITFTRQLLEDTDLSDDQKQF 924

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            +  S +C++Q+ K+L+DMDLESIEDGYLELDTAEF +G ++D VI+QGM    EKGL+I 
Sbjct: 925  LDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTVMDAVISQGMTTSREKGLQII 984

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+    L+GDQ+RLQQ+LS+FL+N I+FTP  +  + IK+  TR+ LGG V+V+ 
Sbjct: 985  RETPREISTMRLFGDQIRLQQVLSDFLINAIRFTPSSEGWVKIKVVPTRKRLGGNVHVMH 1044

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR++HPG GLP+ELV +M      M+Q+G GL +CRKLV+LMNGDVQY+R      FV
Sbjct: 1045 LEFRVSHPGGGLPDELVLEMYDRAKGMTQEGLGLNMCRKLVRLMNGDVQYVRENAQCYFV 1104

Query: 326  IIVELATNQSD 294
            + VEL   Q D
Sbjct: 1105 VYVELPMAQRD 1115


>emb|CAC11136.1| phytochrome N [Pinus sylvestris]
          Length = 876

 Score = 1305 bits (3376), Expect = 0.0
 Identities = 652/881 (74%), Positives = 748/881 (84%), Gaps = 1/881 (0%)
 Frame = -3

Query: 2933 DDHGEVISEIRRSDLEPYLGLHYPATDVPQASRFLFMKNRVRMICDCYSPPVRVIQDKRL 2754
            DDHGEVISE+RR DLEPYLGLHYPATD+PQASRFLFM+NRVRMICDCY+ PV VIQD+RL
Sbjct: 1    DDHGEVISEMRRYDLEPYLGLHYPATDIPQASRFLFMRNRVRMICDCYAQPVAVIQDERL 60

Query: 2753 KKELSFCGSTLRAPHGCHAQYMANMGSVASLVMAVIVNXXXXXXXXXEGQSQPKGRKLWG 2574
             ++LSFCGSTLRAPHGCHAQYMANMGS+ASLVMAV++N          GQ Q KGR+LWG
Sbjct: 61   PRDLSFCGSTLRAPHGCHAQYMANMGSIASLVMAVVINEKELDGDSE-GQMQQKGRRLWG 119

Query: 2573 LVVCHHTSPRFVPFPLRYACEFMMQVFSIQLNKEVELACQMREKQILRTQTLLCDMLLRD 2394
            LVVCHHTSPR+VPFPLRYACEF+MQVF IQLNKEVELA Q+REKQILRTQTLLCDMLLRD
Sbjct: 120  LVVCHHTSPRYVPFPLRYACEFLMQVFGIQLNKEVELAAQIREKQILRTQTLLCDMLLRD 179

Query: 2393 TPLGIISQKPSIMDLVTCDGAALYYGKKFWLLGITPTENQLLDIIAWLYEQHGDSTGLST 2214
            TPLGI++QKP+IMDLV CDGAALYY + FWLLG+TPTE Q+ DI+AWL E H DSTGLST
Sbjct: 180  TPLGIVTQKPNIMDLVRCDGAALYYERNFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLST 239

Query: 2213 DSLAEAGYPKASQLSEAICGMAAVRINLGDFLFWFRTHTAKEIKWGGAKHDPNERDDSRK 2034
            DSL  AGYP A  L  A+CG+AAVRIN  DFLFWFR+HTAKEIKWGGAKHD  ERDD +K
Sbjct: 240  DSLVYAGYPGAESLGNAVCGIAAVRINSKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKK 299

Query: 2033 MHPRSSFRAFLEVVKWRSLPWEDVEMDAIHSLQLILRSSCKKSDLGDDKNTSKSIAINSQ 1854
            MHPRSSF AFLEVVK RSL WEDVEMDAIHSLQLILR S K++D      + ++I+IN Q
Sbjct: 300  MHPRSSFNAFLEVVKMRSLSWEDVEMDAIHSLQLILRGSRKETD-----GSGRNISINRQ 354

Query: 1853 LNELKLREMDELNAVTNEMVRLIETATVPILAVDSNGLVNGWNKKAAELTGMSAEEVLGE 1674
            LN+LKL+EMDELNAVTNEMVRLIETAT PILAVD+ G+VNGWN+KAAELTG+S EEVLGE
Sbjct: 355  LNDLKLQEMDELNAVTNEMVRLIETATAPILAVDAYGVVNGWNRKAAELTGLSVEEVLGE 414

Query: 1673 PLVNLVEETSVGTVKRILSLALEGQEESNIQIELKTHGELEENGPVHLIVNACASRDVKD 1494
            PL+NLVEETS   VKR+L LAL+G EE N+QIELK HG  E+ GPV L+VNAC+SRD+K+
Sbjct: 415  PLINLVEETSAENVKRMLHLALQGVEEQNVQIELKRHGSEEDKGPVVLLVNACSSRDLKE 474

Query: 1493 NVVGVCFVAQDVTGQKVVMDKFTRIQGDYKAIVQNPSPLIPPIFGTDEFGWCSEWNSAME 1314
            NVVGVCFVAQDVTGQK+VMDKFTRIQGDY+AIVQNPSPLIPPIFGTDE G C   NSAME
Sbjct: 475  NVVGVCFVAQDVTGQKIVMDKFTRIQGDYRAIVQNPSPLIPPIFGTDECG-CVPENSAME 533

Query: 1313 KLTGWEREHIINKMLLGEVFGTRAVCCRLKGQNSMTKLRIVLNSAMAGQETEKFPXXXXX 1134
            KL+GW+RE II+KMLLGEVFGTR  CCRLKGQN++T+LRI+LNS+M GQETEKFP     
Sbjct: 534  KLSGWKREEIIDKMLLGEVFGTRTACCRLKGQNALTQLRIILNSSMTGQETEKFPFGFFD 593

Query: 1133 XXXXFVEALLSANKRIDEDGRITGVFCFLHIASAELQQALRVKRISEQTSXXXXXXXXXX 954
                +VE LLSANK++DE+G+ITGVFCFLHIAS ELQQAL V+ + EQ +          
Sbjct: 594  RHGKYVETLLSANKKLDEEGKITGVFCFLHIASPELQQALYVQHMLEQAAMKRLQALTYL 653

Query: 953  XLEIKNPLSGISFMQRLLERSG-LKEEQTQLVKISTLCQKQILKILDDMDLESIEDGYLE 777
             LEIKNPL GI F Q+++ER+  L+E+Q QLV+ S LCQKQILKILDDMDLESIED YL+
Sbjct: 654  RLEIKNPLYGIMFTQKMMERTDFLREDQRQLVETSALCQKQILKILDDMDLESIEDRYLD 713

Query: 776  LDTAEFTLGELLDVVITQGMMECEEKGLEIFHDTPREMLETCLYGDQMRLQQILSNFLLN 597
            LDT EFTLG LLD VI+QGM++ EEKGLEI +D PRE+  T LYGDQ RLQQIL+NFL+ 
Sbjct: 714  LDTVEFTLGALLDAVISQGMIQSEEKGLEIGYDLPREITTTGLYGDQSRLQQILANFLVT 773

Query: 596  VIQFTPEGKRISIKLSSTRRNLGGGVYVLDLEFRITHPGQGLPEELVEQMLSINNAMSQD 417
            VIQFTP  K + IK+S T+R+LGGGVYV+ +EFRITHPG GLPE+LV+QM + +  MSQ+
Sbjct: 774  VIQFTPAEKWVRIKVSPTKRHLGGGVYVIGIEFRITHPGPGLPEKLVQQMFNFDPDMSQE 833

Query: 416  GYGLFICRKLVKLMNGDVQYLRGGGTSCFVIIVELATNQSD 294
            G+GL ICRKLV+LMNGDVQYLRGGGTS FVI+VELAT+Q++
Sbjct: 834  GFGLLICRKLVRLMNGDVQYLRGGGTSSFVIVVELATSQNE 874


>gb|AAB19058.1| phytochrome photoreceptor [Ceratodon purpureus]
          Length = 1121

 Score = 1305 bits (3376), Expect = 0.0
 Identities = 657/1031 (63%), Positives = 797/1031 (77%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP++G+ +VLGIGTD+R+LFTP+S AAL+KAA   +++LLNPI 
Sbjct: 94   AYSENASEFLDLMPQAVPSMGEMDVLGIGTDIRTLFTPSSGAALEKAAATQDISLLNPIT 153

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VH + SGKP  AI HRID  +V+DFE V+  D  ++AAGALQS+KLA+KAI+RLQ++P G
Sbjct: 154  VHCRRSGKPLYAIAHRIDIGIVIDFEAVKMNDVSVSAAGALQSHKLAAKAITRLQALPGG 213

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAYKFHED+HGEV++EIRR DLEPYLGLHYPATD+PQA
Sbjct: 214  DIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVVAEIRRMDLEPYLGLHYPATDIPQA 273

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVR+I DC + PV++IQD  +K+ +S  GSTLRAPHGCHAQYM NMGS+ASL
Sbjct: 274  SRFLFMKNRVRVIADCCASPVKLIQDPDIKQPVSLAGSTLRAPHGCHAQYMGNMGSIASL 333

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAVI+N          G  Q +GRKLWGLVVCHHTSPR VPFPLR ACEF+MQVF +QL
Sbjct: 334  VMAVIINDNEEDSR---GAIQ-RGRKLWGLVVCHHTSPRTVPFPLRSACEFLMQVFGMQL 389

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+FWL
Sbjct: 390  NMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQTPNIMDLVKCDGAALYYGKRFWL 449

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LG TPTENQ+ DI  WL E H DSTGLSTDSLA+  YP A  L +A+CGMAA +I   DF
Sbjct: 450  LGTTPTENQIKDIAEWLLEYHKDSTGLSTDSLADRNYPGAHLLGDAVCGMAAAKITAKDF 509

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKE+KWGGAKHDP E+DD RKMHPRSSF+AFLEVVK RSLPWEDVEMDAIHS
Sbjct: 510  LFWFRSHTAKEVKWGGAKHDPAEKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHS 569

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL  MDEL+ V NEMVRLIETAT PIL
Sbjct: 570  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLHGMDELSVVANEMVRLIETATAPIL 624

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDS G++NGWN K A +TG+   E +G  LV +LV + SV  V+R+L LA +G+EE N+
Sbjct: 625  AVDSTGMINGWNAKIAHVTGLPVSEAMGRSLVKDLVLDESVVVVERLLYLASQGEEEQNV 684

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+LKT G   E   V LIVNAC+SRDV D+VVGVCFV QDVTGQK+ MDKFTRIQGDYK
Sbjct: 685  EIKLKTFGTQTEKEAVILIVNACSSRDVSDSVVGVCFVGQDVTGQKMFMDKFTRIQGDYK 744

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
             IV+NP PLIPPIFG DE+G+C EWN AME LTGW+ + ++ K+L+GE+FG   +CCRLK
Sbjct: 745  TIVKNPHPLIPPIFGGDEYGYCFEWNPAMEALTGWKHDELVGKLLVGEIFGMEMMCCRLK 804

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
             Q+SMTK  I LN+AM G  T+KF          FVEALLS NKR + DG ITGVFCFL 
Sbjct: 805  SQDSMTKFMISLNNAMDGTNTDKFSFSFCNREGKFVEALLSTNKRTNADGVITGVFCFLQ 864

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
            IAS+ELQQAL V+R +E+ +            EIKNPL GI+F ++LLE + L ++Q Q 
Sbjct: 865  IASSELQQALTVQRATEKVAIAKLKELAYIRQEIKNPLCGITFTRQLLEDTDLSDDQKQF 924

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            +  S +C++Q+ K+L+DMDLESIEDGYLELDTAEF +G ++D VI+QGM    EKGL+I 
Sbjct: 925  LDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTVMDAVISQGMTTSREKGLQII 984

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+    L+GDQ+RLQQ+LS+FL+N I+FTP  +  + IK+  TR+ LGG V+V+ 
Sbjct: 985  RETPREISTMRLFGDQIRLQQVLSDFLINAIRFTPSSEGWVKIKVVPTRKRLGGNVHVMH 1044

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR++HPG GLP+ELV +M      M+Q+G GL +CRKLV+LMNGDVQY+R      FV
Sbjct: 1045 LEFRVSHPGGGLPDELVLEMYDRGKGMTQEGLGLNMCRKLVRLMNGDVQYVRENAQCYFV 1104

Query: 326  IIVELATNQSD 294
            + VEL   Q D
Sbjct: 1105 VYVELPMAQRD 1115


>dbj|BAA33775.1| phytochrome 2 [Adiantum capillus-veneris]
          Length = 1140

 Score = 1303 bits (3371), Expect = 0.0
 Identities = 652/1033 (63%), Positives = 802/1033 (77%), Gaps = 4/1033 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKE-VLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPI 3204
            AYSENA E L     SVP+VG +  VLGIGTD R+LFT AS+AAL+KA+G V+V++LNPI
Sbjct: 114  AYSENAAEMLDLMPQSVPSVGVQVLVLGIGTDARTLFTYASAAALEKASGAVDVSMLNPI 173

Query: 3203 LVHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPM-TAAGALQSYKLASKAISRLQSMP 3027
             VH ++S KPF AI+HRID  LV+DFEPVRP D  +  AAGALQS+KLA+KAISRLQ++P
Sbjct: 174  TVHCRSSSKPFNAIVHRIDVGLVIDFEPVRPADVAVWAAAGALQSHKLAAKAISRLQALP 233

Query: 3026 SGNISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVP 2847
             G+I LLCD VV+EV ELTGYDRVMAYKFHED+HGEV++EIRRSDLEPYLGLHYPATD+P
Sbjct: 234  VGDIDLLCDSVVEEVRELTGYDRVMAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIP 293

Query: 2846 QASRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVA 2667
            QASRFLFMKNRVRMICDC + PVRVIQDK L++ LS  GSTLRAPHGCH+QYMANMGS+A
Sbjct: 294  QASRFLFMKNRVRMICDCRALPVRVIQDKELRQPLSLAGSTLRAPHGCHSQYMANMGSIA 353

Query: 2666 SLVMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSI 2487
            SLVMAV+VN             QPK R+LWGLVVCHHT+PR VPF LR ACEF+MQVF +
Sbjct: 354  SLVMAVVVNDNDEDVSNR--SQQPKMRRLWGLVVCHHTTPRAVPFALRSACEFLMQVFGL 411

Query: 2486 QLNKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKF 2307
            QLN E+ELA QMREK ILRTQTLLCDMLLRD P+GI+S+ P+IMDLV CDGAALYYGK F
Sbjct: 412  QLNMELELAAQMREKHILRTQTLLCDMLLRDAPIGIVSESPNIMDLVKCDGAALYYGKNF 471

Query: 2306 WLLGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLG 2127
            WLLG TP E Q+ D+  WL + H DSTGLSTDSLA+AGYP A+ L +A+CGMAA +I   
Sbjct: 472  WLLGTTPIEAQIKDLAEWLLDVHRDSTGLSTDSLADAGYPGAAALGDAVCGMAAAKITTR 531

Query: 2126 DFLFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAI 1947
            DFLFWFR+HTAKEIKWGGAKHDP +RDD RKMHPRSSF+AFLEVVK RSLPWED+EMDAI
Sbjct: 532  DFLFWFRSHTAKEIKWGGAKHDPEDRDDGRKMHPRSSFKAFLEVVKRRSLPWEDMEMDAI 591

Query: 1946 HSLQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVP 1767
            HSLQLILR S +  D  D K       I+++LN+LKL  MDEL+ V NEMVRLIETAT P
Sbjct: 592  HSLQLILRGSFQDIDDSDTKTM-----IHARLNDLKLHGMDELSTVANEMVRLIETATAP 646

Query: 1766 ILAVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEES 1590
            I AVD+ G +NGWN K AELTG++ EE +   LV ++V   S+ T +R+L LAL+GQEE 
Sbjct: 647  IFAVDAGGFINGWNAKVAELTGLTVEEAMSRSLVRDVVVNASMETAERVLDLALQGQEEQ 706

Query: 1589 NIQIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGD 1410
            N++I+LKT+G+    GPV LIVNAC+SRD  DNVVGVCFV QDVTGQKVVMDKFTRIQGD
Sbjct: 707  NVEIKLKTYGDQAIKGPVILIVNACSSRDFTDNVVGVCFVGQDVTGQKVVMDKFTRIQGD 766

Query: 1409 YKAIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCR 1230
            YK IVQNP+PLIPPIFG DEFG+CSEWN AMEK +GW+RE +I KML+GEVFG+   CC+
Sbjct: 767  YKTIVQNPNPLIPPIFGADEFGYCSEWNPAMEKFSGWKREDVIGKMLIGEVFGSDLACCK 826

Query: 1229 LKGQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCF 1050
            L+GQ+SMTK  I+LN+AM G+++++FP         + EALL ANKR D DG ITGVFCF
Sbjct: 827  LRGQDSMTKFMIILNAAMGGRDSDRFPFGFFDRYGKYAEALLIANKRTDSDGAITGVFCF 886

Query: 1049 LHIASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQT 870
            LH AS ELQQAL+V++ S +T+            EI+NPL GI F ++LL+ + L +EQ 
Sbjct: 887  LHTASPELQQALQVQKRSARTALDRLKEVAYMKQEIRNPLYGIVFTRKLLDNTNLTDEQK 946

Query: 869  QLVKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLE 690
            Q+++ S+LC+KQ+  ILD+ + E ++ G ++LDT EFT+G ++D VI+QGM+   EKGL+
Sbjct: 947  QIMETSSLCEKQLQNILDEDNFEKLDQGNVDLDTLEFTMGTVMDAVISQGMIRSREKGLQ 1006

Query: 689  IFHDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYV 513
            +  +T  E+  T L+GDQ RLQQ+L++FL   I+FT      + IK+  T +N+  G+++
Sbjct: 1007 LIRETHVEIKNTRLFGDQYRLQQVLADFLTTAIRFTSSSDGWVGIKVVPTIKNMKDGLHI 1066

Query: 512  LDLEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSC 333
            +  EFR++HPG G+PE+LV+QM   +  ++Q+G GL + RKLVKLMNGDV+Y R  G   
Sbjct: 1067 VHFEFRVSHPGSGIPEDLVQQMYDRSQEITQEGMGLSVSRKLVKLMNGDVKYTREAGVCY 1126

Query: 332  FVIIVELATNQSD 294
            F++ VEL   Q D
Sbjct: 1127 FLVTVELPLVQED 1139


>gb|AAM94956.1| phytochrome [Ceratodon purpureus]
          Length = 1126

 Score = 1303 bits (3371), Expect = 0.0
 Identities = 648/1031 (62%), Positives = 805/1031 (78%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP++G ++VLGIGTD RSLFTP+S+ AL++AAG  +++L+NPI 
Sbjct: 99   AYSENAPELLDVMPQAVPSLGQQDVLGIGTDARSLFTPSSATALERAAGAADLSLVNPIS 158

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            VHS+ASGKPF AI+HRID  +VM FEPVRP D  ++ AG L S+KLA+KAI+RLQ++  G
Sbjct: 159  VHSRASGKPFYAIIHRIDVGIVMGFEPVRPNDVIVSTAGTLHSHKLAAKAIARLQALSGG 218

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAYKFHED+HGEV++EIRRSDLEPYLGLHYP+TD+PQA
Sbjct: 219  DIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPSTDIPQA 278

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKNRVRMI DC++PPV+VIQDK L++ +S  GSTLRAPHGCHAQYM NMGSVAS+
Sbjct: 279  SRFLFMKNRVRMIVDCWAPPVKVIQDKDLRQPISLAGSTLRAPHGCHAQYMGNMGSVASV 338

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
             MAVI N          G  Q + R+LWGLVVCHHTS R + FPLR ACEF+MQVF +QL
Sbjct: 339  TMAVIXNDQEDDF----GGQQTRARRLWGLVVCHHTSARTISFPLRSACEFLMQVFGLQL 394

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVEL  Q REK ILRTQT+LCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+FWL
Sbjct: 395  NMEVELENQKREKHILRTQTMLCDMLLRDAPVGIVSQCPNIMDLVKCDGAALYYGKRFWL 454

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LGITP+E Q+ +I  WL E H DSTGLSTDSLA+AGYP A+ L +A+CGMAA RI   DF
Sbjct: 455  LGITPSEEQIEEIANWLLEHHQDSTGLSTDSLADAGYPGANLLGDAVCGMAAARITPTDF 514

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIK GGAKH+ +++DD RKM PRSSF AFLEV+K RS+PWED+EMDAIHS
Sbjct: 515  LFWFRSHTAKEIKRGGAKHEADDKDDGRKMTPRSSFNAFLEVMKRRSVPWEDIEMDAIHS 574

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL+ MDEL+ V NEMVRLIETAT PIL
Sbjct: 575  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLQGMDELSTVANEMVRLIETATAPIL 629

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDSNG +NGWN K AELTG+   + +G  LV +L+ + SV  V+R+L LAL+G EE ++
Sbjct: 630  AVDSNGFINGWNAKVAELTGLPVGDAMGRSLVQDLIVDESVEVVERLLYLALQGDEEQDV 689

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+L+T G  +  G V LIVNAC+SRDV+DNVVGVCFV QDVT QK V DKFTRI GDYK
Sbjct: 690  EIQLRTFGPQKGKGAVILIVNACSSRDVQDNVVGVCFVGQDVTSQKQVHDKFTRIHGDYK 749

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
            +IVQNP+PLIPPIFG+DE G+C+EW+ +MEKLTGW+R+ ++ KML+GEVFGT+ +CCRLK
Sbjct: 750  SIVQNPNPLIPPIFGSDELGYCTEWSPSMEKLTGWKRDEVLGKMLVGEVFGTQQICCRLK 809

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
            GQ+S+TK  IVLN+AM GQ+T+K+P         FVEALL+ANKR D DG ITGVFCFLH
Sbjct: 810  GQDSVTKFMIVLNNAMDGQDTDKYPFSFYDRQGKFVEALLTANKRTDADGYITGVFCFLH 869

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
            IAS EL QAL V+R +E+ +            EIKNPL GI F + L+E + L +EQ Q 
Sbjct: 870  IASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMEDTDLSDEQKQF 929

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            +  S +C++Q+ KILDDMDLESIEDGYLEL+TAE  LG ++D V++QGM+   EKGL++ 
Sbjct: 930  MDTSAVCERQLRKILDDMDLESIEDGYLELETAESELGSMMDAVVSQGMITSREKGLQLI 989

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+ +  L+GDQ+RLQ +L++FLLN ++ TP  +  + IK+  T++ LGGG +V+ 
Sbjct: 990  RETPREINDMSLFGDQVRLQHVLADFLLNAVRLTPSSEGWVGIKVVPTKKRLGGGFHVVH 1049

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR+ HPG GLPEELV +M      M+Q+G GL +CRKLVKLMNG+V+Y+R  G S F+
Sbjct: 1050 LEFRVAHPGSGLPEELVHEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVKYIRDTGKSYFL 1109

Query: 326  IIVELATNQSD 294
            + +EL     D
Sbjct: 1110 VNLELPLTVRD 1120


>ref|XP_001778155.1| phytochrome 1 [Physcomitrella patens] gi|139001617|dbj|BAF51707.1|
            phytochrome1 [Physcomitrella patens]
            gi|162670477|gb|EDQ57045.1| phytochrome 1 [Physcomitrella
            patens]
          Length = 1123

 Score = 1300 bits (3363), Expect = 0.0
 Identities = 652/1031 (63%), Positives = 799/1031 (77%), Gaps = 2/1031 (0%)
 Frame = -3

Query: 3380 AYSENALETLTDGSHSVPNVGDKEVLGIGTDVRSLFTPASSAALQKAAGFVEVNLLNPIL 3201
            AYSENA E L     +VP+VG+ + L IGTDVR+LFT +S A+L+KAA   E++LLNPI 
Sbjct: 96   AYSENAPEILDLVPQAVPSVGEMDTLRIGTDVRTLFTASSVASLEKAAEAQEMSLLNPIT 155

Query: 3200 VHSKASGKPFCAILHRIDAALVMDFEPVRPFDTPMTAAGALQSYKLASKAISRLQSMPSG 3021
            V+ + SGK   AI HRID  +V+DFE V+  D  ++AAGALQS+KLA+KAI+RLQ++P G
Sbjct: 156  VNCRRSGKQLYAIAHRIDIGIVIDFEAVKTDDHLVSAAGALQSHKLAAKAITRLQALPGG 215

Query: 3020 NISLLCDMVVKEVHELTGYDRVMAYKFHEDDHGEVISEIRRSDLEPYLGLHYPATDVPQA 2841
            +I LLCD VV+EV ELTGYDRVMAY+FHED+HGEV++EIRR+DLEPYLGLHYP TD+PQA
Sbjct: 216  DIGLLCDTVVEEVRELTGYDRVMAYRFHEDEHGEVVAEIRRADLEPYLGLHYPGTDIPQA 275

Query: 2840 SRFLFMKNRVRMICDCYSPPVRVIQDKRLKKELSFCGSTLRAPHGCHAQYMANMGSVASL 2661
            SRFLFMKN+VR+I DC +PPV+VIQD  L++ +S  GSTLR+PHGCHAQYM NMGS+ASL
Sbjct: 276  SRFLFMKNKVRIIADCSAPPVKVIQDPTLRQPVSLAGSTLRSPHGCHAQYMGNMGSIASL 335

Query: 2660 VMAVIVNXXXXXXXXXEGQSQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFMMQVFSIQL 2481
            VMAVI+N            S  +GRKLWGLVVCHHTSPR VPFPLR AC F+MQVF +QL
Sbjct: 336  VMAVIINDNEEDSHG----SVQRGRKLWGLVVCHHTSPRTVPFPLRSACGFLMQVFGLQL 391

Query: 2480 NKEVELACQMREKQILRTQTLLCDMLLRDTPLGIISQKPSIMDLVTCDGAALYYGKKFWL 2301
            N EVELA Q+REK ILRTQTLLCDMLLRD P+GI+SQ P+IMDLV CDGAALYYGK+FWL
Sbjct: 392  NMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQIPNIMDLVKCDGAALYYGKRFWL 451

Query: 2300 LGITPTENQLLDIIAWLYEQHGDSTGLSTDSLAEAGYPKASQLSEAICGMAAVRINLGDF 2121
            LG TPTE+Q+ DI  WL E H DSTGLSTDSLA+A YP A  L +A+CGMAA +I   DF
Sbjct: 452  LGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCGMAAAKITAKDF 511

Query: 2120 LFWFRTHTAKEIKWGGAKHDPNERDDSRKMHPRSSFRAFLEVVKWRSLPWEDVEMDAIHS 1941
            LFWFR+HTAKEIKWGGAKHDP E+DD RKMHPRSSF+AFLEVVK RSLPWEDVEMDAIHS
Sbjct: 512  LFWFRSHTAKEIKWGGAKHDPGEKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHS 571

Query: 1940 LQLILRSSCKKSDLGDDKNTSKSIAINSQLNELKLREMDELNAVTNEMVRLIETATVPIL 1761
            LQLILR S +  D  D K       I+++LN+LKL +MDEL+ V NEMVRLIETAT PIL
Sbjct: 572  LQLILRGSFQDIDDSDTKTM-----IHARLNDLKLHDMDELSVVANEMVRLIETATAPIL 626

Query: 1760 AVDSNGLVNGWNKKAAELTGMSAEEVLGEPLV-NLVEETSVGTVKRILSLALEGQEESNI 1584
            AVDSNG++NGWN K A++TG+   E +G  LV +LV + SV  V+R+L LAL G+EE N+
Sbjct: 627  AVDSNGMINGWNAKIAQVTGLPVSEAMGRSLVKDLVTDESVAVVERLLYLALRGEEEQNV 686

Query: 1583 QIELKTHGELEENGPVHLIVNACASRDVKDNVVGVCFVAQDVTGQKVVMDKFTRIQGDYK 1404
            +I+LKT G   E G V LIVNAC+SRDV +NVVGVCFV QDVTGQK+ MDKFTRIQGDYK
Sbjct: 687  EIKLKTFGTQTEKGVVILIVNACSSRDVSENVVGVCFVGQDVTGQKMFMDKFTRIQGDYK 746

Query: 1403 AIVQNPSPLIPPIFGTDEFGWCSEWNSAMEKLTGWEREHIINKMLLGEVFGTRAVCCRLK 1224
             IVQNP PLIPPIFG DEFG+C EWN AME LTGW+++ ++ K+L+GE+FG + +CCR+K
Sbjct: 747  TIVQNPHPLIPPIFGADEFGYCFEWNPAMEGLTGWKKDEVVGKLLVGEIFGMQMMCCRMK 806

Query: 1223 GQNSMTKLRIVLNSAMAGQETEKFPXXXXXXXXXFVEALLSANKRIDEDGRITGVFCFLH 1044
             Q++MTK  I LN+AM GQ T+KF          +V+ LLS NKR + DG ITGVFCFL 
Sbjct: 807  SQDAMTKFMIALNTAMDGQSTDKFTFSFFDREGKYVDVLLSTNKRTNADGVITGVFCFLQ 866

Query: 1043 IASAELQQALRVKRISEQTSXXXXXXXXXXXLEIKNPLSGISFMQRLLERSGLKEEQTQL 864
            IAS+ELQQAL+V+R +E+ +            EIKNPL GI+F ++LLE + L ++Q Q 
Sbjct: 867  IASSELQQALKVQRATEKVAVAKLKELAYIRQEIKNPLCGITFTRQLLEDTDLSDDQQQF 926

Query: 863  VKISTLCQKQILKILDDMDLESIEDGYLELDTAEFTLGELLDVVITQGMMECEEKGLEIF 684
            +  S +C++Q+ K+L+DMDLESIEDGYLELDTAEF +G +++ VI+QGM    EKGL+IF
Sbjct: 927  LDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTVMNAVISQGMTTSREKGLQIF 986

Query: 683  HDTPREMLETCLYGDQMRLQQILSNFLLNVIQFTPEGKR-ISIKLSSTRRNLGGGVYVLD 507
             +TPRE+    L GDQ+RLQQ+LS+FLLN ++FTP  +  + IK+  TR+ LGG V+V+ 
Sbjct: 987  RETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGWVKIKVVPTRKRLGGSVHVVH 1046

Query: 506  LEFRITHPGQGLPEELVEQMLSINNAMSQDGYGLFICRKLVKLMNGDVQYLRGGGTSCFV 327
            LEFR++HPG GLPEELV +M      M+Q+G GL +CRKLV+LMNGDV Y+R      FV
Sbjct: 1047 LEFRVSHPGAGLPEELVLEMYDRGKGMTQEGLGLNMCRKLVRLMNGDVHYVREAMQCYFV 1106

Query: 326  IIVELATNQSD 294
            + VEL   Q D
Sbjct: 1107 VNVELPMAQRD 1117